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BioLiP
Download all results in tab-seperated text for 36 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1 1gyt:A (2.5) BS01 ZN 3.4.11.1
    3.4.11.10    		 GO:0001073 ... P68767 10449417
    2 1gyt:A (2.5) BS02 ZN 3.4.11.1
    3.4.11.10    		 GO:0001073 ... P68767 10449417
    3 1gyt:A (2.5) BS03 CO3 3.4.11.1
    3.4.11.10    		 GO:0001073 ... P68767 10449417
    4 1gyt:B (2.5) BS01 ZN 3.4.11.1
    3.4.11.10    		 GO:0001073 ... P68767 10449417
    5 1gyt:B (2.5) BS02 ZN 3.4.11.1
    3.4.11.10    		 GO:0001073 ... P68767 10449417
    6 1gyt:B (2.5) BS03 CO3 3.4.11.1
    3.4.11.10    		 GO:0001073 ... P68767 10449417
    7 1gyt:C (2.5) BS01 ZN 3.4.11.1
    3.4.11.10    		 GO:0001073 ... P68767 10449417
    8 1gyt:C (2.5) BS02 ZN 3.4.11.1
    3.4.11.10    		 GO:0001073 ... P68767 10449417
    9 1gyt:C (2.5) BS03 CO3 3.4.11.1
    3.4.11.10    		 GO:0001073 ... P68767 10449417
    10 1gyt:D (2.5) BS01 ZN 3.4.11.1
    3.4.11.10    		 GO:0001073 ... P68767 10449417
    11 1gyt:D (2.5) BS02 ZN 3.4.11.1
    3.4.11.10    		 GO:0001073 ... P68767 10449417
    12 1gyt:D (2.5) BS03 CO3 3.4.11.1
    3.4.11.10    		 GO:0001073 ... P68767 10449417
    13 1gyt:E (2.5) BS01 ZN 3.4.11.1
    3.4.11.10    		 GO:0001073 ... P68767 10449417
    14 1gyt:E (2.5) BS02 ZN 3.4.11.1
    3.4.11.10    		 GO:0001073 ... P68767 10449417
    15 1gyt:E (2.5) BS03 CO3 3.4.11.1
    3.4.11.10    		 GO:0001073 ... P68767 10449417
    16 1gyt:F (2.5) BS01 ZN 3.4.11.1
    3.4.11.10    		 GO:0001073 ... P68767 10449417
    17 1gyt:F (2.5) BS02 ZN 3.4.11.1
    3.4.11.10    		 GO:0001073 ... P68767 10449417
    18 1gyt:F (2.5) BS03 CO3 3.4.11.1
    3.4.11.10    		 GO:0001073 ... P68767 10449417
    19 1gyt:G (2.5) BS01 ZN 3.4.11.1
    3.4.11.10    		 GO:0001073 ... P68767 10449417
    20 1gyt:G (2.5) BS02 ZN 3.4.11.1
    3.4.11.10    		 GO:0001073 ... P68767 10449417
    21 1gyt:G (2.5) BS03 CO3 3.4.11.1
    3.4.11.10    		 GO:0001073 ... P68767 10449417
    22 1gyt:H (2.5) BS01 ZN 3.4.11.1
    3.4.11.10    		 GO:0001073 ... P68767 10449417
    23 1gyt:H (2.5) BS02 ZN 3.4.11.1
    3.4.11.10    		 GO:0001073 ... P68767 10449417
    24 1gyt:H (2.5) BS03 CO3 3.4.11.1
    3.4.11.10    		 GO:0001073 ... P68767 10449417
    25 1gyt:I (2.5) BS01 ZN 3.4.11.1
    3.4.11.10    		 GO:0001073 ... P68767 10449417
    26 1gyt:I (2.5) BS02 ZN 3.4.11.1
    3.4.11.10    		 GO:0001073 ... P68767 10449417
    27 1gyt:I (2.5) BS03 CO3 3.4.11.1
    3.4.11.10    		 GO:0001073 ... P68767 10449417
    28 1gyt:J (2.5) BS01 ZN 3.4.11.1
    3.4.11.10    		 GO:0001073 ... P68767 10449417
    29 1gyt:J (2.5) BS02 ZN 3.4.11.1
    3.4.11.10    		 GO:0001073 ... P68767 10449417
    30 1gyt:J (2.5) BS03 CO3 3.4.11.1
    3.4.11.10    		 GO:0001073 ... P68767 10449417
    31 1gyt:K (2.5) BS01 ZN 3.4.11.1
    3.4.11.10    		 GO:0001073 ... P68767 10449417
    32 1gyt:K (2.5) BS02 ZN 3.4.11.1
    3.4.11.10    		 GO:0001073 ... P68767 10449417
    33 1gyt:K (2.5) BS03 CO3 3.4.11.1
    3.4.11.10    		 GO:0001073 ... P68767 10449417
    34 1gyt:L (2.5) BS01 ZN 3.4.11.1
    3.4.11.10    		 GO:0001073 ... P68767 10449417
    35 1gyt:L (2.5) BS02 ZN 3.4.11.1
    3.4.11.10    		 GO:0001073 ... P68767 10449417
    36 1gyt:L (2.5) BS03 CO3 3.4.11.1
    3.4.11.10    		 GO:0001073 ... P68767 10449417
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023)(download the PDF file).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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