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BioLiP
Download all results in tab-seperated text for 123 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.
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    # PDB
    (Resolution Å)
    Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1 7zjw:B (2.8) BS01 rna ? GO:0001514 ... Q96T21 35709277
    2 7zjw:B (2.8) BS02 rna ? GO:0001514 ... Q96T21 35709277
    3 7zjw:E (2.8) BS01 rna 3.6.5.- GO:0000049 ... P57772 35709277
    4 7zjw:E (2.8) BS02 rna 3.6.5.- GO:0000049 ... P57772 35709277
    5 7zjw:E (2.8) BS03 rna 3.6.5.- GO:0000049 ... P57772 35709277
    6 7zjw:E (2.8) BS04 rna 3.6.5.- GO:0000049 ... P57772 35709277
    7 7zjw:E (2.8) BS05 GTP 3.6.5.- GO:0000049 ... P57772 35709277
    8 7zjw:LD (2.8) BS01 rna ? GO:0002181 ... A0A8B8VPA8 35709277
    9 7zjw:LD (2.8) BS02 rna ? GO:0002181 ... A0A8B8VPA8 35709277
    10 7zjw:LD (2.8) BS03 MG ? GO:0002181 ... A0A8B8VPA8 35709277
    11 7zjw:LE (2.8) BS01 rna ? GO:0003723 ... G1TL06 35709277
    12 7zjw:LF (2.8) BS01 rna ? GO:0003723 ... G1SVW5 35709277
    13 7zjw:LF (2.8) BS02 rna ? GO:0003723 ... G1SVW5 35709277
    14 7zjw:LG (2.8) BS01 rna ? GO:0000027 ... P19949 35709277
    15 7zjw:LG (2.8) BS02 rna ? GO:0000027 ... P19949 35709277
    16 7zjw:LG (2.8) BS03 GTP ? GO:0000027 ... P19949 35709277
    17 7zjw:LH (2.8) BS01 rna ? GO:0000027 ... G1SKF7 35709277
    18 7zjw:LI (2.8) BS01 rna ? GO:0000463 ... A0A7J8C453 35709277
    19 7zjw:LI (2.8) BS02 rna ? GO:0000463 ... A0A7J8C453 35709277
    20 7zjw:LJ (2.8) BS01 rna ? GO:0000470 ... P62424 35709277
    21 7zjw:LJ (2.8) BS02 rna ? GO:0000470 ... P62424 35709277
    22 7zjw:LK (2.8) BS01 rna ? GO:0002181 ... G1SWI6 35709277
    23 7zjw:LL (2.8) BS01 rna ? GO:0000027 ... B7NZQ2 35709277
    24 7zjw:LL (2.8) BS02 rna ? GO:0000027 ... B7NZQ2 35709277
    25 7zjw:LM (2.8) BS01 rna ? GO:0003723 ... G1TUB8 35709277
    26 7zjw:LM (2.8) BS02 rna ? GO:0003723 ... G1TUB8 35709277
    27 7zjw:LO (2.8) BS01 rna ? GO:0003723 ... G1TKB3 35709277
    28 7zjw:LO (2.8) BS02 rna ? GO:0003723 ... G1TKB3 35709277
    29 7zjw:LP (2.8) BS01 rna ? GO:0003723 ... G1SZ12 35709277
    30 7zjw:LQ (2.8) BS01 rna ? GO:0002181 ... G1T0C1 35709277
    31 7zjw:LQ (2.8) BS02 rna ? GO:0002181 ... G1T0C1 35709277
    32 7zjw:LR (2.8) BS01 rna ? GO:0003729 ... A0A0N8ETI8 35709277
    33 7zjw:LS (2.8) BS01 rna ? GO:0002181 ... A0A8J4KQ25 35709277
    34 7zjw:LS (2.8) BS02 rna ? GO:0002181 ... A0A8J4KQ25 35709277
    35 7zjw:LT (2.8) BS01 rna ? GO:0002181 ... F6QKI9 35709277
    36 7zjw:LU (2.8) BS01 rna ? GO:0003723 ... A0A2J8KH59 35709277
    37 7zjw:LU (2.8) BS02 rna ? GO:0003723 ... A0A2J8KH59 35709277
    38 7zjw:LV (2.8) BS01 rna ? GO:0003735 ... A0A1Z5LHJ5 35709277
    39 7zjw:LV (2.8) BS02 rna ? GO:0003735 ... A0A1Z5LHJ5 35709277
    40 7zjw:LW (2.8) BS01 rna ? GO:0003735 ... G1SHQ2 35709277
    41 7zjw:LW (2.8) BS02 rna ? GO:0003735 ... G1SHQ2 35709277
    42 7zjw:LX (2.8) BS01 rna ? GO:0002181 ... Q4R5I3 35709277
    43 7zjw:LY (2.8) BS01 rna ? GO:0003735 ... A0A3P9HH38 35709277
    44 7zjw:LZ (2.8) BS01 rna ? GO:0000027 ... G1SE28 35709277
    45 7zjw:LZ (2.8) BS02 rna ? GO:0000027 ... G1SE28 35709277
    46 7zjw:La (2.8) BS01 rna ? GO:0000027 ... G1SE76 35709277
    47 7zjw:La (2.8) BS02 rna ? GO:0000027 ... G1SE76 35709277
    48 7zjw:Lb (2.8) BS01 rna ? GO:0002181 ... A0A5N3X333 35709277
    49 7zjw:Lb (2.8) BS02 rna ? GO:0002181 ... A0A5N3X333 35709277
    50 7zjw:Lc (2.8) BS01 rna ? GO:0003735 ... A0A851LWS6 35709277
    51 7zjw:Ld (2.8) BS01 rna ? GO:0003735 ... G1SNY0 35709277
    52 7zjw:Le (2.8) BS01 rna ? GO:0002181 ... G1SGR6 35709277
    53 7zjw:Lf (2.8) BS01 rna ? GO:0002181 ... G1TDL2 35709277
    54 7zjw:Lf (2.8) BS02 rna ? GO:0002181 ... G1TDL2 35709277
    55 7zjw:Lg (2.8) BS01 rna ? GO:0002181 ... G1SHG0 35709277
    56 7zjw:Lh (2.8) BS01 rna ? GO:0003735 ... G1TUN8 35709277
    57 7zjw:Li (2.8) BS01 rna ? GO:0000049 ... G1SF08 35709277
    58 7zjw:Lj (2.8) BS01 rna ? GO:0003735 ... G1TXG5 35709277
    59 7zjw:Lj (2.8) BS02 MG ? GO:0003735 ... G1TXG5 35709277
    60 7zjw:Lj (2.8) BS03 ZN ? GO:0003735 ... G1TXG5 35709277
    61 7zjw:Lk (2.8) BS01 rna ? GO:0000463 ... G1SIT5 35709277
    62 7zjw:Lk (2.8) BS02 rna ? GO:0000463 ... G1SIT5 35709277
    63 7zjw:Ll (2.8) BS01 rna ? GO:0002181 ... A0A1S3FQR5 35709277
    64 7zjw:Lm (2.8) BS01 rna ? GO:0003723 ... U3KPD5 35709277
    65 7zjw:Lm (2.8) BS02 rna ? GO:0003723 ... U3KPD5 35709277
    66 7zjw:Lm (2.8) BS03 ZN ? GO:0003723 ... U3KPD5 35709277
    67 7zjw:Ln (2.8) BS01 rna ? GO:0003735 ... A0A1A7W9T9 35709277
    68 7zjw:Lo (2.8) BS01 rna ? GO:0003735 ... G1TTN1 35709277
    69 7zjw:Lo (2.8) BS02 rna ? GO:0003735 ... G1TTN1 35709277
    70 7zjw:Lp (2.8) BS01 rna ? GO:0003723 ... A0A8C8Y9V5 35709277
    71 7zjw:Lp (2.8) BS02 ZN ? GO:0003723 ... A0A8C8Y9V5 35709277
    72 7zjw:Lq (2.8) BS01 rna ? GO:0003735 ... A0A7J7V6K8 35709277
    73 7zjw:Lq (2.8) BS02 ZN ? GO:0003735 ... A0A7J7V6K8 35709277
    74 7zjw:Lr (2.8) BS01 rna ? GO:0003735 ... A0A6I9ZMF9 35709277
    75 7zjw:Lr (2.8) BS02 ZN ? GO:0003735 ... A0A6I9ZMF9 35709277
    76 7zjw:Ls (2.8) BS01 rna ? GO:0003735 ... A0A4U1EJN3 35709277
    77 7zjw:Lt (2.8) BS01 rna ? GO:0000027 ... G1SPK4 35709277
    78 7zjw:Lx (2.8) BS01 rna ? GO:0000470 ... G1SKZ8 35709277
    79 7zjw:Lx (2.8) BS02 rna ? GO:0000470 ... G1SKZ8 35709277
    80 7zjw:SB (2.8) BS01 rna ? GO:0000028 ... A0A7J8BG50 35709277
    81 7zjw:SC (2.8) BS01 rna ? GO:0000028 ... A0A3M0JHZ8 35709277
    82 7zjw:SD (2.8) BS01 rna ? GO:0003735 ... A0A8C0T835 35709277
    83 7zjw:SD (2.8) BS02 rna ? GO:0003735 ... A0A8C0T835 35709277
    84 7zjw:SD (2.8) BS03 ZN ? GO:0003735 ... A0A8C0T835 35709277
    85 7zjw:SE (2.8) BS01 rna ? GO:0003735 ... G1T8A2 35709277
    86 7zjw:SF (2.8) BS01 rna ? GO:0002181 ... A0A2K5LQY6 35709277
    87 7zjw:SF (2.8) BS02 ZN ? GO:0002181 ... A0A2K5LQY6 35709277
    88 7zjw:SF (2.8) BS03 ZN ? GO:0002181 ... A0A2K5LQY6 35709277
    89 7zjw:SG (2.8) BS01 rna ? GO:0001934 ... A0A2K6K8B0 35709277
    90 7zjw:SH (2.8) BS01 rna ? GO:0003735 ... G1U7M4 35709277
    91 7zjw:SH (2.8) BS02 ZN ? GO:0003735 ... G1U7M4 35709277
    92 7zjw:SL (2.8) BS01 rna ? GO:0000028 ... G1TLT8 35709277
    93 7zjw:SM (2.8) BS01 rna ? GO:0003735 ... G1SS70 35709277
    94 7zjw:SN (2.8) BS01 rna ? GO:0003723 ... O18789 35709277
    95 7zjw:SN (2.8) BS02 rna ? GO:0003723 ... O18789 35709277
    96 7zjw:SO (2.8) BS01 rna 4.2.99.18 GO:0003677 ... G1TNM3 35709277
    97 7zjw:SP (2.8) BS01 rna ? GO:0003723 ... Q76N24 35709277
    98 7zjw:SQ (2.8) BS01 rna ? GO:0000028 ... A0A5F9DBR8 35709277
    99 7zjw:SQ (2.8) BS02 rna ? GO:0000028 ... A0A5F9DBR8 35709277
    100 7zjw:SR (2.8) BS01 rna ? GO:0000082 ... P62753 35709277
    101 7zjw:SS (2.8) BS01 rna ? GO:0003735 ... G1SVB0 35709277
    102 7zjw:ST (2.8) BS01 rna ? GO:0000462 ... Q5E958 35709277
    103 7zjw:ST (2.8) BS02 rna ? GO:0000462 ... Q5E958 35709277
    104 7zjw:SU (2.8) BS01 rna ? GO:0003723 ... B7NZS8 35709277
    105 7zjw:SV (2.8) BS01 rna ? GO:0003723 ... G1TPV3 35709277
    106 7zjw:SW (2.8) BS01 rna ? GO:0003735 ... G1TRM4 35709277
    107 7zjw:SX (2.8) BS01 rna ? GO:0003735 ... G1SFR8 35709277
    108 7zjw:SY (2.8) BS01 rna ? GO:0003735 ... A0A663F1C0 35709277
    109 7zjw:SZ (2.8) BS01 rna ? GO:0000028 ... A0A7L0BEC6 35709277
    110 7zjw:Sa (2.8) BS01 rna ? GO:0000028 ... G1U0Q2 35709277
    111 7zjw:Sa (2.8) BS02 rna ? GO:0000028 ... G1U0Q2 35709277
    112 7zjw:Sa (2.8) BS03 rna ? GO:0000028 ... G1U0Q2 35709277
    113 7zjw:Sb (2.8) BS01 rna ? GO:0000462 ... G1SGX4 35709277
    114 7zjw:Sc (2.8) BS01 rna ? GO:0003735 ... G1TU13 35709277
    115 7zjw:Sd (2.8) BS01 rna ? GO:0003676 ... H0WTR0 35709277
    116 7zjw:Sd (2.8) BS02 rna ? GO:0003676 ... H0WTR0 35709277
    117 7zjw:Se (2.8) BS01 rna ? GO:0000028 ... A0A2Y9E7Q1 35709277
    118 7zjw:Sf (2.8) BS01 rna ? GO:0003723 ... G1SIZ2 35709277
    119 7zjw:Sh (2.8) BS01 rna ? GO:0003735 ... G1TG89 35709277
    120 7zjw:Si (2.8) BS01 rna ? GO:0003735 ... G1SZ47 35709277
    121 7zjw:Si (2.8) BS02 rna ? GO:0003735 ... G1SZ47 35709277
    122 7zjw:Sj (2.8) BS01 rna ? GO:0003735 ... A0A6J1UT65 35709277
    123 7zjw:Sk (2.8) BS01 rna ? GO:0003735 ... A0A2U4BVW1 35709277

    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023)(download the PDF file).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
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