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BioLiP
Download all results in tab-seperated text for 194 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.
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    # PDB
    (Resolution Å)
    Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1 7qvp:LA (3.0) BS01 rna ? GO:0002181 ... A0A8B8VPA8 36302773
    2 7qvp:LA (3.0) BS02 rna ? GO:0002181 ... A0A8B8VPA8 36302773
    3 7qvp:LB (3.0) BS01 rna ? GO:0002181 ... P39023 36302773
    4 7qvp:LC (3.0) BS01 rna ? GO:0002181 ... P36578 36302773
    5 7qvp:LC (3.0) BS02 rna ? GO:0002181 ... P36578 36302773
    6 7qvp:LD (3.0) BS01 rna ? GO:0000027 ... P46777 36302773
    7 7qvp:LD (3.0) BS02 rna ? GO:0000027 ... P46777 36302773
    8 7qvp:LE (3.0) BS01 rna ? GO:0000027 ... Q02878 36302773
    9 7qvp:LF (3.0) BS01 rna ? GO:0000463 ... P18124 36302773
    10 7qvp:LF (3.0) BS02 rna ? GO:0000463 ... P18124 36302773
    11 7qvp:LG (3.0) BS01 rna ? GO:0000470 ... P62424 36302773
    12 7qvp:LG (3.0) BS02 rna ? GO:0000470 ... P62424 36302773
    13 7qvp:LH (3.0) BS01 rna ? GO:0002181 ... P32969 36302773
    14 7qvp:LI (3.0) BS01 rna ? GO:0000027 ... Q96L21 36302773
    15 7qvp:LI (3.0) BS02 rna ? GO:0000027 ... Q96L21 36302773
    16 7qvp:LJ (3.0) BS01 rna ? GO:0000027 ... P62913 36302773
    17 7qvp:LJ (3.0) BS02 rna ? GO:0000027 ... P62913 36302773
    18 7qvp:LL (3.0) BS01 rna ? GO:0001824 ... P26373 36302773
    19 7qvp:LL (3.0) BS02 rna ? GO:0001824 ... P26373 36302773
    20 7qvp:LM (3.0) BS01 rna ? GO:0002181 ... P50914 36302773
    21 7qvp:LN (3.0) BS01 rna ? GO:0002181 ... L8Y0W1 36302773
    22 7qvp:LN (3.0) BS02 rna ? GO:0002181 ... L8Y0W1 36302773
    23 7qvp:LO (3.0) BS01 rna ? GO:0002181 ... P40429 36302773
    24 7qvp:LP (3.0) BS01 rna ? GO:0003735 ... P18621 36302773
    25 7qvp:LP (3.0) BS02 rna ? GO:0003735 ... P18621 36302773
    26 7qvp:LQ (3.0) BS01 rna ? GO:0002181 ... Q07020 36302773
    27 7qvp:LR (3.0) BS01 rna ? GO:0003723 ... A0A2J8KH59 36302773
    28 7qvp:LR (3.0) BS02 rna ? GO:0003723 ... A0A2J8KH59 36302773
    29 7qvp:LS (3.0) BS01 rna ? GO:0002181 ... Q02543 36302773
    30 7qvp:LS (3.0) BS02 rna ? GO:0002181 ... Q02543 36302773
    31 7qvp:LT (3.0) BS01 rna ? GO:0002181 ... P46778 36302773
    32 7qvp:LT (3.0) BS02 rna ? GO:0002181 ... P46778 36302773
    33 7qvp:LU (3.0) BS01 rna ? GO:0002181 ... P35268 36302773
    34 7qvp:LV (3.0) BS01 rna ? GO:0003735 ... A0A3P9HH38 36302773
    35 7qvp:LW (3.0) BS01 rna ? GO:0002181 ... F2X267 36302773
    36 7qvp:LX (3.0) BS01 rna ? GO:0000027 ... P62750 36302773
    37 7qvp:LX (3.0) BS02 rna ? GO:0000027 ... P62750 36302773
    38 7qvp:LY (3.0) BS01 rna ? GO:0002181 ... A0A5N3X333 36302773
    39 7qvp:LY (3.0) BS02 rna ? GO:0002181 ... A0A5N3X333 36302773
    40 7qvp:LZ (3.0) BS01 rna ? GO:0003735 ... A0A851LWS6 36302773
    41 7qvp:La (3.0) BS01 rna ? GO:0002181 ... P46776 36302773
    42 7qvp:Lb (3.0) BS01 rna ? GO:0002181 ... P47914 36302773
    43 7qvp:Lc (3.0) BS01 rna ? GO:0002181 ... P62888 36302773
    44 7qvp:Ld (3.0) BS01 rna ? GO:0002181 ... G7NZE1 36302773
    45 7qvp:Le (3.0) BS01 rna ? GO:0002181 ... P62910 36302773
    46 7qvp:Lf (3.0) BS01 rna ? GO:0000049 ... P18077 36302773
    47 7qvp:Lg (3.0) BS01 rna ? GO:0003735 ... A0A1U7T3M5 36302773
    48 7qvp:Lh (3.0) BS01 rna ? GO:0000463 ... P42766 36302773
    49 7qvp:Lh (3.0) BS02 rna ? GO:0000463 ... P42766 36302773
    50 7qvp:Li (3.0) BS01 rna ? GO:0002181 ... Q9Y3U8 36302773
    51 7qvp:Lj (3.0) BS01 rna ? GO:0003723 ... A0A2Y9RW09 36302773
    52 7qvp:Lj (3.0) BS02 rna ? GO:0003723 ... A0A2Y9RW09 36302773
    53 7qvp:Lk (3.0) BS01 rna ? GO:0003735 ... A0A1A7W9T9 36302773
    54 7qvp:Ll (3.0) BS01 rna ? GO:0003735 ... A0A7N4PFJ2 36302773
    55 7qvp:Ll (3.0) BS02 rna ? GO:0003735 ... A0A7N4PFJ2 36302773
    56 7qvp:Lm (3.0) BS01 rna ? GO:0003723 ... A0A8C8Y9V5 36302773
    57 7qvp:Lo (3.0) BS01 rna ? GO:0003735 ... J3KQN4 36302773
    58 7qvp:Lo (3.0) BS02 rna ? GO:0003735 ... J3KQN4 36302773
    59 7qvp:Lo (3.0) BS03 rna ? GO:0003735 ... J3KQN4 36302773
    60 7qvp:Lp (3.0) BS01 rna ? GO:0003735 ... A0A6I9ZMF9 36302773
    61 7qvp:Lr (3.0) BS01 rna ? GO:0002181 ... P46779 36302773
    62 7qvp:MA (3.0) BS01 rna ? GO:0002181 ... A0A8B8VPA8 36302773
    63 7qvp:MB (3.0) BS01 rna ? GO:0002181 ... P39023 36302773
    64 7qvp:MC (3.0) BS01 rna ? GO:0002181 ... P36578 36302773
    65 7qvp:MC (3.0) BS02 rna ? GO:0002181 ... P36578 36302773
    66 7qvp:MD (3.0) BS01 rna ? GO:0000027 ... P46777 36302773
    67 7qvp:MD (3.0) BS02 rna ? GO:0000027 ... P46777 36302773
    68 7qvp:ME (3.0) BS01 rna ? GO:0000027 ... Q02878 36302773
    69 7qvp:MF (3.0) BS01 rna ? GO:0000463 ... P18124 36302773
    70 7qvp:MF (3.0) BS02 rna ? GO:0000463 ... P18124 36302773
    71 7qvp:MG (3.0) BS01 rna ? GO:0000470 ... P62424 36302773
    72 7qvp:MG (3.0) BS02 rna ? GO:0000470 ... P62424 36302773
    73 7qvp:MH (3.0) BS01 rna ? GO:0002181 ... P32969 36302773
    74 7qvp:MI (3.0) BS01 rna ? GO:0000027 ... Q96L21 36302773
    75 7qvp:MI (3.0) BS02 rna ? GO:0000027 ... Q96L21 36302773
    76 7qvp:MJ (3.0) BS01 rna ? GO:0000027 ... P62913 36302773
    77 7qvp:MJ (3.0) BS02 rna ? GO:0000027 ... P62913 36302773
    78 7qvp:ML (3.0) BS01 rna ? GO:0001824 ... P26373 36302773
    79 7qvp:ML (3.0) BS02 rna ? GO:0001824 ... P26373 36302773
    80 7qvp:MM (3.0) BS01 rna ? GO:0002181 ... P50914 36302773
    81 7qvp:MN (3.0) BS01 rna ? GO:0002181 ... L8Y0W1 36302773
    82 7qvp:MN (3.0) BS02 rna ? GO:0002181 ... L8Y0W1 36302773
    83 7qvp:MO (3.0) BS01 rna ? GO:0002181 ... P40429 36302773
    84 7qvp:MP (3.0) BS01 rna ? GO:0002181 ... P18621 36302773
    85 7qvp:MP (3.0) BS02 rna ? GO:0002181 ... P18621 36302773
    86 7qvp:MQ (3.0) BS01 rna ? GO:0002181 ... Q07020 36302773
    87 7qvp:MR (3.0) BS01 rna ? GO:0003723 ... A0A2J8KH59 36302773
    88 7qvp:MR (3.0) BS02 rna ? GO:0003723 ... A0A2J8KH59 36302773
    89 7qvp:MS (3.0) BS01 rna ? GO:0002181 ... Q02543 36302773
    90 7qvp:MS (3.0) BS02 rna ? GO:0002181 ... Q02543 36302773
    91 7qvp:MT (3.0) BS01 rna ? GO:0002181 ... P46778 36302773
    92 7qvp:MT (3.0) BS02 rna ? GO:0002181 ... P46778 36302773
    93 7qvp:MU (3.0) BS01 rna ? GO:0002181 ... P35268 36302773
    94 7qvp:MV (3.0) BS01 rna ? GO:0003735 ... A0A3P9HH38 36302773
    95 7qvp:MV (3.0) BS02 rna ? GO:0003735 ... A0A3P9HH38 36302773
    96 7qvp:MW (3.0) BS01 rna ? GO:0002181 ... F2X267 36302773
    97 7qvp:MW (3.0) BS02 rna ? GO:0002181 ... F2X267 36302773
    98 7qvp:MX (3.0) BS01 rna ? GO:0000027 ... P62750 36302773
    99 7qvp:MX (3.0) BS02 rna ? GO:0000027 ... P62750 36302773
    100 7qvp:MY (3.0) BS01 rna ? GO:0002181 ... A0A5N3X333 36302773
    101 7qvp:MY (3.0) BS02 rna ? GO:0002181 ... A0A5N3X333 36302773
    102 7qvp:MZ (3.0) BS01 rna ? GO:0003735 ... A0A851LWS6 36302773
    103 7qvp:Ma (3.0) BS01 rna ? GO:0002181 ... P46776 36302773
    104 7qvp:Mb (3.0) BS01 rna ? GO:0002181 ... P47914 36302773
    105 7qvp:Mc (3.0) BS01 rna ? GO:0002181 ... P62888 36302773
    106 7qvp:Md (3.0) BS01 rna ? GO:0002181 ... G7NZE1 36302773
    107 7qvp:Me (3.0) BS01 rna ? GO:0002181 ... P62910 36302773
    108 7qvp:Mf (3.0) BS01 rna ? GO:0000049 ... P18077 36302773
    109 7qvp:Mg (3.0) BS01 rna ? GO:0003735 ... A0A1U7T3M5 36302773
    110 7qvp:Mh (3.0) BS01 rna ? GO:0000463 ... P42766 36302773
    111 7qvp:Mh (3.0) BS02 rna ? GO:0000463 ... P42766 36302773
    112 7qvp:Mi (3.0) BS01 rna ? GO:0002181 ... Q9Y3U8 36302773
    113 7qvp:Mj (3.0) BS01 rna ? GO:0003723 ... A0A2Y9RW09 36302773
    114 7qvp:Mj (3.0) BS02 rna ? GO:0003723 ... A0A2Y9RW09 36302773
    115 7qvp:Mk (3.0) BS01 rna ? GO:0003735 ... A0A1A7W9T9 36302773
    116 7qvp:Ml (3.0) BS01 rna ? GO:0003735 ... A0A7N4PFJ2 36302773
    117 7qvp:Ml (3.0) BS02 rna ? GO:0003735 ... A0A7N4PFJ2 36302773
    118 7qvp:Mm (3.0) BS01 rna ? GO:0003723 ... A0A8C8Y9V5 36302773
    119 7qvp:Mo (3.0) BS01 rna ? GO:0003735 ... J3KQN4 36302773
    120 7qvp:Mo (3.0) BS02 rna ? GO:0003735 ... J3KQN4 36302773
    121 7qvp:Mp (3.0) BS01 rna ? GO:0003735 ... A0A6I9ZMF9 36302773
    122 7qvp:Mp (3.0) BS02 rna ? GO:0003735 ... A0A6I9ZMF9 36302773
    123 7qvp:Mr (3.0) BS01 rna ? GO:0002181 ... P46779 36302773
    124 7qvp:RA (3.0) BS01 rna ? GO:0000028 ... P08865 36302773
    125 7qvp:RB (3.0) BS01 rna ? GO:0002181 ... P61247 36302773
    126 7qvp:RC (3.0) BS01 rna ? GO:0002181 ... P15880 36302773
    127 7qvp:RD (3.0) BS01 rna 4.2.99.18 GO:0000977 ... P23396 36302773
    128 7qvp:RE (3.0) BS01 rna ? GO:0002181 ... P62701 36302773
    129 7qvp:RE (3.0) BS02 rna ? GO:0002181 ... P62701 36302773
    130 7qvp:RF (3.0) BS01 rna ? GO:0000028 ... A0A6J0Y1Z7 36302773
    131 7qvp:RG (3.0) BS01 rna ? GO:0000082 ... P62753 36302773
    132 7qvp:RH (3.0) BS01 rna ? GO:0001843 ... P62082 36302773
    133 7qvp:RI (3.0) BS01 rna ? GO:0000462 ... P62241 36302773
    134 7qvp:RI (3.0) BS02 rna ? GO:0000462 ... P62241 36302773
    135 7qvp:RJ (3.0) BS01 rna ? GO:0003723 ... A0A6J0B498 36302773
    136 7qvp:RK (3.0) BS01 rna ? GO:0002181 ... P46783 36302773
    137 7qvp:RL (3.0) BS01 rna ? GO:0003735 ... A0A8B8VW69 36302773
    138 7qvp:RN (3.0) BS01 rna ? GO:0003735 ... A0A663F1C0 36302773
    139 7qvp:RN (3.0) BS02 rna ? GO:0003735 ... A0A663F1C0 36302773
    140 7qvp:RO (3.0) BS01 rna ? GO:0000028 ... A0A7L0BEC6 36302773
    141 7qvp:RP (3.0) BS01 rna ? GO:0000028 ... A0A2K6QL61 36302773
    142 7qvp:RP (3.0) BS02 rna ? GO:0000028 ... A0A2K6QL61 36302773
    143 7qvp:RQ (3.0) BS01 rna ? GO:0000462 ... A0A4W2HV66 36302773
    144 7qvp:RR (3.0) BS01 rna ? GO:0002181 ... P08708 36302773
    145 7qvp:RS (3.0) BS01 rna ? GO:0003676 ... H0WTR0 36302773
    146 7qvp:RT (3.0) BS01 rna ? GO:0000028 ... A0A2Y9E7Q1 36302773
    147 7qvp:RU (3.0) BS01 rna ? GO:0003723 ... P60868 36302773
    148 7qvp:RW (3.0) BS01 rna ? GO:0003735 ... A0A2K5QKS6 36302773
    149 7qvp:RX (3.0) BS01 rna ? GO:0003735 ... A0A340WVW7 36302773
    150 7qvp:RY (3.0) BS01 rna ? GO:0002181 ... P62847 36302773
    151 7qvp:RZ (3.0) BS01 rna ? GO:0003735 ... A0A6J3IG71 36302773
    152 7qvp:Ra (3.0) BS01 rna ? GO:0003735 ... A0A6J2NCX2 36302773
    153 7qvp:Rb (3.0) BS01 rna ? GO:0000028 ... A0A7J8BG50 36302773
    154 7qvp:Rc (3.0) BS01 rna ? GO:0000028 ... A0A3M0JHZ8 36302773
    155 7qvp:Rd (3.0) BS01 rna ? GO:0003735 ... A0A2J8WKD7 36302773
    156 7qvp:Re (3.0) BS01 rna ? GO:0003735 ... A0A2K6U587 36302773
    157 7qvp:Rf (3.0) BS01 rna ? GO:0003735 ... A0A671DUR2 36302773
    158 7qvp:Rg (3.0) BS01 rna ? GO:0001934 ... A0A2K6K8B0 36302773
    159 7qvp:Rh (3.0) BS01 rna ? GO:0003735 ... A0A8C0T835 36302773
    160 7qvp:SA (3.0) BS01 rna ? GO:0000028 ... P08865 36302773
    161 7qvp:SB (3.0) BS01 rna ? GO:0002181 ... P61247 36302773
    162 7qvp:SC (3.0) BS01 rna ? GO:0002181 ... P15880 36302773
    163 7qvp:SD (3.0) BS01 rna 4.2.99.18 GO:0000977 ... P23396 36302773
    164 7qvp:SE (3.0) BS01 rna ? GO:0002181 ... P62701 36302773
    165 7qvp:SF (3.0) BS01 rna ? GO:0000028 ... A0A6J0Y1Z7 36302773
    166 7qvp:SF (3.0) BS02 rna ? GO:0000028 ... A0A6J0Y1Z7 36302773
    167 7qvp:SG (3.0) BS01 rna ? GO:0000082 ... P62753 36302773
    168 7qvp:SH (3.0) BS01 rna ? GO:0001843 ... P62082 36302773
    169 7qvp:SI (3.0) BS01 rna ? GO:0000462 ... P62241 36302773
    170 7qvp:SI (3.0) BS02 rna ? GO:0000462 ... P62241 36302773
    171 7qvp:SJ (3.0) BS01 rna ? GO:0003723 ... A0A6J0B498 36302773
    172 7qvp:SK (3.0) BS01 rna ? GO:0002181 ... P46783 36302773
    173 7qvp:SL (3.0) BS01 rna ? GO:0003735 ... A0A8B8VW69 36302773
    174 7qvp:SN (3.0) BS01 rna ? GO:0003735 ... A0A663F1C0 36302773
    175 7qvp:SO (3.0) BS01 rna ? GO:0000028 ... A0A7L0BEC6 36302773
    176 7qvp:SO (3.0) BS02 rna ? GO:0000028 ... A0A7L0BEC6 36302773
    177 7qvp:SP (3.0) BS01 rna ? GO:0000028 ... A0A2K6QL61 36302773
    178 7qvp:SP (3.0) BS02 rna ? GO:0000028 ... A0A2K6QL61 36302773
    179 7qvp:SQ (3.0) BS01 rna ? GO:0000462 ... A0A4W2HV66 36302773
    180 7qvp:SR (3.0) BS01 rna ? GO:0002181 ... P08708 36302773
    181 7qvp:SS (3.0) BS01 rna ? GO:0003676 ... H0WTR0 36302773
    182 7qvp:ST (3.0) BS01 rna ? GO:0000028 ... A0A2Y9E7Q1 36302773
    183 7qvp:SU (3.0) BS01 rna ? GO:0003723 ... P60868 36302773
    184 7qvp:SW (3.0) BS01 rna ? GO:0003735 ... A0A2K5QKS6 36302773
    185 7qvp:SX (3.0) BS01 rna ? GO:0003735 ... A0A340WVW7 36302773
    186 7qvp:SY (3.0) BS01 rna ? GO:0002181 ... P62847 36302773
    187 7qvp:SZ (3.0) BS01 rna ? GO:0003735 ... A0A6J3IG71 36302773
    188 7qvp:Sa (3.0) BS01 rna ? GO:0003735 ... A0A6J2NCX2 36302773
    189 7qvp:Sa (3.0) BS02 rna ? GO:0003735 ... A0A6J2NCX2 36302773
    190 7qvp:Sb (3.0) BS01 rna ? GO:0000028 ... A0A7J8BG50 36302773
    191 7qvp:Sc (3.0) BS01 rna ? GO:0000028 ... A0A3M0JHZ8 36302773
    192 7qvp:Sd (3.0) BS01 rna ? GO:0003735 ... A0A2J8WKD7 36302773
    193 7qvp:Se (3.0) BS01 rna ? GO:0003735 ... A0A2K6U587 36302773
    194 7qvp:Sg (3.0) BS01 rna ? GO:0001934 ... A0A2K6K8B0 36302773

    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023)(download the PDF file).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
  • zhanglabzhanggroup.org | +65-6601-1241 | Computing 1, 13 Computing Drive, Singapore 117417