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BioLiP Library
Download all results in tab-seperated text for 99 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1 7nrc:LD (3.9) BS01 rna ? GO:0002181 ... P0CX45 33790014
    2 7nrc:LD (3.9) BS02 rna ? GO:0002181 ... P0CX45 33790014
    3 7nrc:LE (3.9) BS01 rna ? GO:0000027 ... P14126 33790014
    4 7nrc:LF (3.9) BS01 rna ? GO:0002181 ... P10664 33790014
    5 7nrc:LF (3.9) BS02 rna ? GO:0002181 ... P10664 33790014
    6 7nrc:LG (3.9) BS01 rna ? GO:0000027 ... P26321 33790014
    7 7nrc:LG (3.9) BS02 rna ? GO:0000027 ... P26321 33790014
    8 7nrc:LH (3.9) BS01 rna ? GO:0000027 ... P05739 33790014
    9 7nrc:LI (3.9) BS01 rna ? GO:0000463 ... P05737 33790014
    10 7nrc:LI (3.9) BS02 rna ? GO:0000463 ... P05737 33790014
    11 7nrc:LJ (3.9) BS01 rna ? GO:0000470 ... P17076 33790014
    12 7nrc:LJ (3.9) BS02 rna ? GO:0000470 ... P17076 33790014
    13 7nrc:LK (3.9) BS01 rna ? GO:0002181 ... P05738 33790014
    14 7nrc:LL (3.9) BS01 rna ? GO:0000027 ... P41805 33790014
    15 7nrc:LL (3.9) BS02 rna ? GO:0000027 ... P41805 33790014
    16 7nrc:LL (3.9) BS03 rna ? GO:0000027 ... P41805 33790014
    17 7nrc:LL (3.9) BS04 rna ? GO:0000027 ... P41805 33790014
    18 7nrc:LM (3.9) BS01 rna ? GO:0000027 ... Q3E757 33790014
    19 7nrc:LM (3.9) BS02 rna ? GO:0000027 ... Q3E757 33790014
    20 7nrc:LM (3.9) BS03 rna ? GO:0000027 ... Q3E757 33790014
    21 7nrc:LN (3.9) BS01 rna ? GO:0002181 ... Q12690 33790014
    22 7nrc:LN (3.9) BS02 rna ? GO:0002181 ... Q12690 33790014
    23 7nrc:LO (3.9) BS01 rna ? GO:0000027 ... P36105 33790014
    24 7nrc:LP (3.9) BS01 rna ? GO:0002181 ... P05748 33790014
    25 7nrc:LP (3.9) BS02 rna ? GO:0002181 ... P05748 33790014
    26 7nrc:LQ (3.9) BS01 rna ? GO:0000470 ... P26784 33790014
    27 7nrc:LR (3.9) BS01 rna ? GO:0000448 ... P05740 33790014
    28 7nrc:LR (3.9) BS02 rna ? GO:0000448 ... P05740 33790014
    29 7nrc:LS (3.9) BS01 rna ? GO:0002181 ... P0CX49 33790014
    30 7nrc:LT (3.9) BS01 rna ? GO:0002181 ... P0CX82 33790014
    31 7nrc:LT (3.9) BS02 rna ? GO:0002181 ... P0CX82 33790014
    32 7nrc:LU (3.9) BS01 rna ? GO:0002181 ... P0CX23 33790014
    33 7nrc:LU (3.9) BS02 rna ? GO:0002181 ... P0CX23 33790014
    34 7nrc:LV (3.9) BS01 rna ? GO:0002181 ... Q02753 33790014
    35 7nrc:LV (3.9) BS02 rna ? GO:0002181 ... Q02753 33790014
    36 7nrc:LW (3.9) BS01 rna ? GO:0003735 ... P05749 33790014
    37 7nrc:LX (3.9) BS01 rna ? GO:0002181 ... P0CX41 33790014
    38 7nrc:LX (3.9) BS02 rna ? GO:0002181 ... P0CX41 33790014
    39 7nrc:LY (3.9) BS01 rna ? N/A P04449 33790014
    40 7nrc:LZ (3.9) BS01 rna ? GO:0003735 ... P04456 33790014
    41 7nrc:LZ (3.9) BS02 rna ? GO:0003735 ... P04456 33790014
    42 7nrc:La (3.9) BS01 rna ? GO:0002181 ... P05743 33790014
    43 7nrc:La (3.9) BS02 rna ? GO:0002181 ... P05743 33790014
    44 7nrc:Lb (3.9) BS01 rna ? GO:0002181 ... P0C2H6 33790014
    45 7nrc:Lc (3.9) BS01 rna ? GO:0002181 ... P02406 33790014
    46 7nrc:Ld (3.9) BS01 rna ? GO:0002181 ... P05747 33790014
    47 7nrc:Le (3.9) BS01 rna ? GO:0002181 ... P14120 33790014
    48 7nrc:Lf (3.9) BS01 rna ? GO:0002181 ... P0C2H8 33790014
    49 7nrc:Lg (3.9) BS01 rna ? GO:0002181 ... P38061 33790014
    50 7nrc:Lh (3.9) BS01 rna ? GO:0000027 ... P05744 33790014
    51 7nrc:Li (3.9) BS01 rna ? GO:0002181 ... P87262 33790014
    52 7nrc:Lj (3.9) BS01 rna ? GO:0000463 ... P0CX84 33790014
    53 7nrc:Lj (3.9) BS02 rna ? GO:0000463 ... P0CX84 33790014
    54 7nrc:Lk (3.9) BS01 rna ? GO:0002181 ... P05745 33790014
    55 7nrc:Ll (3.9) BS01 rna ? GO:0000448 ... P49166 33790014
    56 7nrc:Ll (3.9) BS02 rna ? GO:0000448 ... P49166 33790014
    57 7nrc:Lm (3.9) BS01 rna ? GO:0002181 ... P49167 33790014
    58 7nrc:Ln (3.9) BS01 rna ? GO:0002181 ... P04650 33790014
    59 7nrc:Ln (3.9) BS02 rna ? GO:0002181 ... P04650 33790014
    60 7nrc:Lo (3.9) BS01 rna ? GO:0003735 ... P0CH08 33790014
    61 7nrc:Lq (3.9) BS01 rna ? GO:0002181 ... P0CX27 33790014
    62 7nrc:Lr (3.9) BS01 rna ? GO:0002181 ... P0CX25 33790014
    63 7nrc:Ls (3.9) BS01 rna ? GO:0002182 ... P23301 33790014
    64 7nrc:Ls (3.9) BS02 rna ? GO:0002182 ... P23301 33790014
    65 7nrc:Lt (3.9) BS01 rna N/A N/A N/A 33790014
    66 7nrc:SA (3.9) BS01 rna ? GO:0000054 ... P05750 33790014
    67 7nrc:SB (3.9) BS01 rna ? GO:0000028 ... P26783 33790014
    68 7nrc:SC (3.9) BS01 rna ? N/A Q08745 33790014
    69 7nrc:SD (3.9) BS01 rna ? GO:0003735 ... P48589 33790014
    70 7nrc:SE (3.9) BS01 rna ? GO:0003723 ... Q01855 33790014
    71 7nrc:SF (3.9) BS01 rna ? GO:0000462 ... P0CX51 33790014
    72 7nrc:SG (3.9) BS01 rna ? GO:0000028 ... P14127 33790014
    73 7nrc:SH (3.9) BS01 rna ? GO:0000054 ... P0CX55 33790014
    74 7nrc:SI (3.9) BS01 rna ? GO:0000028 ... P07280 33790014
    75 7nrc:SJ (3.9) BS01 rna ? GO:0003723 ... P38701 33790014
    76 7nrc:SK (3.9) BS01 rna ? N/A Q3E792 33790014
    77 7nrc:SL (3.9) BS01 rna ? GO:0000028 ... Q3E7X9 33790014
    78 7nrc:SM (3.9) BS01 rna ? GO:0002181 ... P41057 33790014
    79 7nrc:SN (3.9) BS01 rna ? GO:0003735 ... P05759 33790014
    80 7nrc:SO (3.9) BS01 rna ? GO:0001965 ... P38011 33790014
    81 7nrc:SP (3.9) BS01 rna ? GO:0003735 ... P32905 33790014
    82 7nrc:SQ (3.9) BS01 rna ? GO:0000462 ... P33442 33790014
    83 7nrc:SR (3.9) BS01 rna ? GO:0003723 ... P25443 33790014
    84 7nrc:SS (3.9) BS01 rna ? GO:0002181 ... P0CX35 33790014
    85 7nrc:ST (3.9) BS01 rna ? GO:0000462 ... P0CX37 33790014
    86 7nrc:SU (3.9) BS01 rna ? GO:0002181 ... P26786 33790014
    87 7nrc:SV (3.9) BS01 rna ? GO:0000462 ... P0CX39 33790014
    88 7nrc:SW (3.9) BS01 rna ? GO:0000462 ... O13516 33790014
    89 7nrc:SX (3.9) BS01 rna ? GO:0000028 ... P0CX47 33790014
    90 7nrc:SY (3.9) BS01 rna ? GO:0000462 ... P05756 33790014
    91 7nrc:SZ (3.9) BS01 rna ? GO:0000028 ... P39516 33790014
    92 7nrc:Sb (3.9) BS01 rna ? GO:0002181 ... P0C0W1 33790014
    93 7nrc:Sc (3.9) BS01 rna ? GO:0000462 ... P0CX29 33790014
    94 7nrc:Sd (3.9) BS01 rna ? GO:0000462 ... P0CX31 33790014
    95 7nrc:Se (3.9) BS01 rna ? GO:0003735 ... P39939 33790014
    96 7nrc:Sf (3.9) BS01 rna ? GO:0000028 ... P35997 33790014
    97 7nrc:Sg (3.9) BS01 rna ? GO:0002181 ... P0CX33 33790014
    98 7nrc:So (3.9) BS01 rna ? GO:0002181 ... P53295 33790014
    99 7nrc:So (3.9) BS02 rna ? GO:0002181 ... P53295 33790014
    Reference:
    • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023)(download the PDF file).
    • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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