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BioLiP
Download all results in tab-seperated text for 96 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.
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    # PDB
    (Resolution Å)
    Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1 6t7t:LA (3.1) BS01 rna ? GO:0002181 ... P0CX45 31858614
    2 6t7t:LA (3.1) BS02 rna ? GO:0002181 ... P0CX45 31858614
    3 6t7t:LB (3.1) BS01 rna ? GO:0000027 ... P14126 31858614
    4 6t7t:LC (3.1) BS01 rna ? GO:0002181 ... P10664 31858614
    5 6t7t:LC (3.1) BS02 rna ? GO:0002181 ... P10664 31858614
    6 6t7t:LD (3.1) BS01 rna ? GO:0000027 ... P26321 31858614
    7 6t7t:LD (3.1) BS02 rna ? GO:0000027 ... P26321 31858614
    8 6t7t:LE (3.1) BS01 rna ? GO:0000027 ... P05739 31858614
    9 6t7t:LF (3.1) BS01 rna ? GO:0000463 ... P05737 31858614
    10 6t7t:LF (3.1) BS02 rna ? GO:0000463 ... P05737 31858614
    11 6t7t:LG (3.1) BS01 rna ? GO:0000470 ... P17076 31858614
    12 6t7t:LG (3.1) BS02 rna ? GO:0000470 ... P17076 31858614
    13 6t7t:LH (3.1) BS01 rna ? GO:0002181 ... P05738 31858614
    14 6t7t:LI (3.1) BS01 rna ? GO:0000027 ... P41805 31858614
    15 6t7t:LI (3.1) BS02 rna ? GO:0000027 ... P41805 31858614
    16 6t7t:LJ (3.1) BS01 rna ? GO:0000027 ... P0C0W9 31858614
    17 6t7t:LJ (3.1) BS02 rna ? GO:0000027 ... P0C0W9 31858614
    18 6t7t:LJ (3.1) BS03 rna ? GO:0000027 ... P0C0W9 31858614
    19 6t7t:LL (3.1) BS01 rna ? GO:0002181 ... Q12690 31858614
    20 6t7t:LL (3.1) BS02 rna ? GO:0002181 ... Q12690 31858614
    21 6t7t:LM (3.1) BS01 rna ? GO:0000027 ... P36105 31858614
    22 6t7t:LN (3.1) BS01 rna ? GO:0002181 ... P05748 31858614
    23 6t7t:LN (3.1) BS02 rna ? GO:0002181 ... P05748 31858614
    24 6t7t:LO (3.1) BS01 rna ? GO:0000470 ... P26784 31858614
    25 6t7t:LP (3.1) BS01 rna ? GO:0000448 ... P05740 31858614
    26 6t7t:LP (3.1) BS02 rna ? GO:0000448 ... P05740 31858614
    27 6t7t:LQ (3.1) BS01 rna ? GO:0002181 ... P0CX49 31858614
    28 6t7t:LR (3.1) BS01 rna ? GO:0002181 ... P0CX82 31858614
    29 6t7t:LR (3.1) BS02 rna ? GO:0002181 ... P0CX82 31858614
    30 6t7t:LS (3.1) BS01 rna ? GO:0002181 ... P0CX23 31858614
    31 6t7t:LS (3.1) BS02 rna ? GO:0002181 ... P0CX23 31858614
    32 6t7t:LT (3.1) BS01 rna ? GO:0002181 ... Q02753 31858614
    33 6t7t:LT (3.1) BS02 rna ? GO:0002181 ... Q02753 31858614
    34 6t7t:LU (3.1) BS01 rna ? GO:0003735 ... P05749 31858614
    35 6t7t:LV (3.1) BS01 rna ? GO:0002181 ... P0CX41 31858614
    36 6t7t:LW (3.1) BS01 rna ? N/A P04449 31858614
    37 6t7t:LW (3.1) BS02 rna ? N/A P04449 31858614
    38 6t7t:LX (3.1) BS01 rna ? GO:0003735 ... P04456 31858614
    39 6t7t:LX (3.1) BS02 rna ? GO:0003735 ... P04456 31858614
    40 6t7t:LY (3.1) BS01 rna ? GO:0002181 ... P05743 31858614
    41 6t7t:LY (3.1) BS02 rna ? GO:0002181 ... P05743 31858614
    42 6t7t:LZ (3.1) BS01 rna ? GO:0002181 ... P0C2H6 31858614
    43 6t7t:La (3.1) BS01 rna ? GO:0002181 ... P02406 31858614
    44 6t7t:Lb (3.1) BS01 rna ? GO:0002181 ... P05747 31858614
    45 6t7t:Lc (3.1) BS01 rna ? GO:0002181 ... P14120 31858614
    46 6t7t:Ld (3.1) BS01 rna ? GO:0002181 ... P0C2H8 31858614
    47 6t7t:Le (3.1) BS01 rna ? GO:0002181 ... P38061 31858614
    48 6t7t:Lf (3.1) BS01 rna ? GO:0000027 ... P05744 31858614
    49 6t7t:Lg (3.1) BS01 rna ? GO:0002181 ... P87262 31858614
    50 6t7t:Lh (3.1) BS01 rna ? GO:0000463 ... P0CX84 31858614
    51 6t7t:Lh (3.1) BS02 rna ? GO:0000463 ... P0CX84 31858614
    52 6t7t:Li (3.1) BS01 rna ? GO:0002181 ... P05745 31858614
    53 6t7t:Lj (3.1) BS01 rna ? GO:0000448 ... P49166 31858614
    54 6t7t:Lj (3.1) BS02 rna ? GO:0000448 ... P49166 31858614
    55 6t7t:Lk (3.1) BS01 rna ? GO:0002181 ... P49167 31858614
    56 6t7t:Ll (3.1) BS01 rna ? GO:0002181 ... P04650 31858614
    57 6t7t:Ll (3.1) BS02 rna ? GO:0002181 ... P04650 31858614
    58 6t7t:Lm (3.1) BS01 rna ? GO:0003735 ... P0CH08 31858614
    59 6t7t:Lo (3.1) BS01 rna ? GO:0002181 ... P0CX27 31858614
    60 6t7t:Lo (3.1) BS02 rna ? GO:0002181 ... P0CX27 31858614
    61 6t7t:Lp (3.1) BS01 rna ? GO:0002181 ... P0CX25 31858614
    62 6t7t:SA (3.1) BS01 rna ? GO:0003735 ... P32905 31858614
    63 6t7t:SB (3.1) BS01 rna ? GO:0000462 ... P33442 31858614
    64 6t7t:SC (3.1) BS01 rna ? GO:0003723 ... P25443 31858614
    65 6t7t:SD (3.1) BS01 rna ? GO:0000054 ... P05750 31858614
    66 6t7t:SE (3.1) BS01 rna ? GO:0002181 ... P0CX35 31858614
    67 6t7t:SF (3.1) BS01 rna ? GO:0000028 ... P26783 31858614
    68 6t7t:SF (3.1) BS02 rna ? GO:0000028 ... P26783 31858614
    69 6t7t:SG (3.1) BS01 rna ? GO:0000462 ... P0CX37 31858614
    70 6t7t:SH (3.1) BS01 rna ? GO:0002181 ... P26786 31858614
    71 6t7t:SI (3.1) BS01 rna ? GO:0000462 ... P0CX39 31858614
    72 6t7t:SI (3.1) BS02 rna ? GO:0000462 ... P0CX39 31858614
    73 6t7t:SJ (3.1) BS01 rna ? GO:0000462 ... O13516 31858614
    74 6t7t:SK (3.1) BS01 rna ? N/A Q08745 31858614
    75 6t7t:SL (3.1) BS01 rna ? GO:0000028 ... P0CX47 31858614
    76 6t7t:SM (3.1) BS01 rna ? GO:0003735 ... P48589 31858614
    77 6t7t:SN (3.1) BS01 rna ? GO:0000462 ... P05756 31858614
    78 6t7t:SO (3.1) BS01 rna ? GO:0000028 ... P06367 31858614
    79 6t7t:SP (3.1) BS01 rna ? GO:0003723 ... Q01855 31858614
    80 6t7t:SQ (3.1) BS01 rna ? GO:0000462 ... P0CX51 31858614
    81 6t7t:SR (3.1) BS01 rna ? GO:0000028 ... P02407 31858614
    82 6t7t:SS (3.1) BS01 rna ? GO:0000054 ... P0CX55 31858614
    83 6t7t:ST (3.1) BS01 rna ? GO:0000028 ... P07280 31858614
    84 6t7t:SU (3.1) BS01 rna ? GO:0003723 ... P38701 31858614
    85 6t7t:SV (3.1) BS01 rna ? GO:0000447 ... P0C0V8 31858614
    86 6t7t:SW (3.1) BS01 rna ? GO:0002181 ... P0C0W1 31858614
    87 6t7t:SX (3.1) BS01 rna ? GO:0000462 ... P0CX29 31858614
    88 6t7t:SY (3.1) BS01 rna ? GO:0000462 ... P0CX31 31858614
    89 6t7t:SZ (3.1) BS01 rna ? N/A Q3E792 31858614
    90 6t7t:Sa (3.1) BS01 rna ? GO:0003735 ... P39939 31858614
    91 6t7t:Sb (3.1) BS01 rna ? GO:0000028 ... P35997 31858614
    92 6t7t:Sc (3.1) BS01 rna ? GO:0000028 ... Q3E7X9 31858614
    93 6t7t:Sd (3.1) BS01 rna ? GO:0002181 ... P41057 31858614
    94 6t7t:Se (3.1) BS01 rna ? GO:0002181 ... P0CX33 31858614
    95 6t7t:Sf (3.1) BS01 rna ? GO:0003735 ... P05759 31858614
    96 6t7t:Sg (3.1) BS01 rna ? GO:0001965 ... P38011 31858614

    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023)(download the PDF file).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
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