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BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

BioLiP
Download all results in tab-seperated text for 539 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.
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    # PDB
    (Resolution Å)
    Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    401 6ly5:X (2.38) BS05 A86 ? GO:0009765 ... B7FRW2 33033236
    402 6ly5:X (2.38) BS06 A86 ? GO:0009765 ... B7FRW2 33033236
    403 6ly5:X (2.38) BS07 CLA ? GO:0009765 ... B7FRW2 33033236
    404 6ly5:X (2.38) BS08 CLA ? GO:0009765 ... B7FRW2 33033236
    405 6ly5:X (2.38) BS09 CLA ? GO:0009765 ... B7FRW2 33033236
    406 6ly5:X (2.38) BS10 CLA ? GO:0009765 ... B7FRW2 33033236
    407 6ly5:X (2.38) BS11 CLA ? GO:0009765 ... B7FRW2 33033236
    408 6ly5:X (2.38) BS12 KC1 ? GO:0009765 ... B7FRW2 33033236
    409 6ly5:X (2.38) BS13 CLA ? GO:0009765 ... B7FRW2 33033236
    410 6ly5:X (2.38) BS14 CLA ? GO:0009765 ... B7FRW2 33033236
    411 6ly5:X (2.38) BS15 CLA ? GO:0009765 ... B7FRW2 33033236
    412 6ly5:a (2.38) BS01 CLA 1.97.1.12 GO:0009522 ... A0A6J4B109 33033236
    413 6ly5:a (2.38) BS02 CLA 1.97.1.12 GO:0009522 ... A0A6J4B109 33033236
    414 6ly5:a (2.38) BS03 CLA 1.97.1.12 GO:0009522 ... A0A6J4B109 33033236
    415 6ly5:a (2.38) BS04 CLA 1.97.1.12 GO:0009522 ... A0A6J4B109 33033236
    416 6ly5:a (2.38) BS05 CLA 1.97.1.12 GO:0009522 ... A0A6J4B109 33033236
    417 6ly5:a (2.38) BS06 CLA 1.97.1.12 GO:0009522 ... A0A6J4B109 33033236
    418 6ly5:a (2.38) BS07 CLA 1.97.1.12 GO:0009522 ... A0A6J4B109 33033236
    419 6ly5:a (2.38) BS08 CLA 1.97.1.12 GO:0009522 ... A0A6J4B109 33033236
    420 6ly5:a (2.38) BS09 CLA 1.97.1.12 GO:0009522 ... A0A6J4B109 33033236
    421 6ly5:a (2.38) BS10 CLA 1.97.1.12 GO:0009522 ... A0A6J4B109 33033236
    422 6ly5:a (2.38) BS11 CLA 1.97.1.12 GO:0009522 ... A0A6J4B109 33033236
    423 6ly5:a (2.38) BS12 CLA 1.97.1.12 GO:0009522 ... A0A6J4B109 33033236
    424 6ly5:a (2.38) BS13 CLA 1.97.1.12 GO:0009522 ... A0A6J4B109 33033236
    425 6ly5:a (2.38) BS14 CLA 1.97.1.12 GO:0009522 ... A0A6J4B109 33033236
    426 6ly5:a (2.38) BS15 CLA 1.97.1.12 GO:0009522 ... A0A6J4B109 33033236
    427 6ly5:a (2.38) BS16 CLA 1.97.1.12 GO:0009522 ... A0A6J4B109 33033236
    428 6ly5:a (2.38) BS17 CLA 1.97.1.12 GO:0009522 ... A0A6J4B109 33033236
    429 6ly5:a (2.38) BS18 CLA 1.97.1.12 GO:0009522 ... A0A6J4B109 33033236
    430 6ly5:a (2.38) BS19 CLA 1.97.1.12 GO:0009522 ... A0A6J4B109 33033236
    431 6ly5:a (2.38) BS20 CLA 1.97.1.12 GO:0009522 ... A0A6J4B109 33033236
    432 6ly5:a (2.38) BS21 CLA 1.97.1.12 GO:0009522 ... A0A6J4B109 33033236
    433 6ly5:a (2.38) BS22 CLA 1.97.1.12 GO:0009522 ... A0A6J4B109 33033236
    434 6ly5:a (2.38) BS23 CLA 1.97.1.12 GO:0009522 ... A0A6J4B109 33033236
    435 6ly5:a (2.38) BS24 CLA 1.97.1.12 GO:0009522 ... A0A6J4B109 33033236
    436 6ly5:a (2.38) BS25 CLA 1.97.1.12 GO:0009522 ... A0A6J4B109 33033236
    437 6ly5:a (2.38) BS26 CLA 1.97.1.12 GO:0009522 ... A0A6J4B109 33033236
    438 6ly5:a (2.38) BS27 CLA 1.97.1.12 GO:0009522 ... A0A6J4B109 33033236
    439 6ly5:a (2.38) BS28 CLA 1.97.1.12 GO:0009522 ... A0A6J4B109 33033236
    440 6ly5:a (2.38) BS29 CLA 1.97.1.12 GO:0009522 ... A0A6J4B109 33033236
    441 6ly5:a (2.38) BS30 CLA 1.97.1.12 GO:0009522 ... A0A6J4B109 33033236
    442 6ly5:a (2.38) BS31 CLA 1.97.1.12 GO:0009522 ... A0A6J4B109 33033236
    443 6ly5:a (2.38) BS32 CLA 1.97.1.12 GO:0009522 ... A0A6J4B109 33033236
    444 6ly5:a (2.38) BS33 CLA 1.97.1.12 GO:0009522 ... A0A6J4B109 33033236
    445 6ly5:a (2.38) BS34 CLA 1.97.1.12 GO:0009522 ... A0A6J4B109 33033236
    446 6ly5:a (2.38) BS35 CLA 1.97.1.12 GO:0009522 ... A0A6J4B109 33033236
    447 6ly5:a (2.38) BS36 CLA 1.97.1.12 GO:0009522 ... A0A6J4B109 33033236
    448 6ly5:a (2.38) BS37 CLA 1.97.1.12 GO:0009522 ... A0A6J4B109 33033236
    449 6ly5:a (2.38) BS38 CLA 1.97.1.12 GO:0009522 ... A0A6J4B109 33033236
    450 6ly5:a (2.38) BS39 CLA 1.97.1.12 GO:0009522 ... A0A6J4B109 33033236
    451 6ly5:a (2.38) BS40 PQN 1.97.1.12 GO:0009522 ... A0A6J4B109 33033236
    452 6ly5:a (2.38) BS41 CLA 1.97.1.12 GO:0009522 ... A0A6J4B109 33033236
    453 6ly5:a (2.38) BS42 DD6 1.97.1.12 GO:0009522 ... A0A6J4B109 33033236
    454 6ly5:a (2.38) BS43 CLA 1.97.1.12 GO:0009522 ... A0A6J4B109 33033236
    455 6ly5:a (2.38) BS44 CLA 1.97.1.12 GO:0009522 ... A0A6J4B109 33033236
    456 6ly5:a (2.38) BS45 SF4 1.97.1.12 GO:0009522 ... A0A6J4B109 33033236
    457 6ly5:a (2.38) BS46 CLA 1.97.1.12 GO:0009522 ... A0A6J4B109 33033236
    458 6ly5:a (2.38) BS47 CLA 1.97.1.12 GO:0009522 ... A0A6J4B109 33033236
    459 6ly5:a (2.38) BS48 CLA 1.97.1.12 GO:0009522 ... A0A6J4B109 33033236
    460 6ly5:a (2.38) BS49 CLA 1.97.1.12 GO:0009522 ... A0A6J4B109 33033236
    461 6ly5:a (2.38) BS50 CLA 1.97.1.12 GO:0009522 ... A0A6J4B109 33033236
    462 6ly5:b (2.38) BS01 peptide 1.97.1.12 GO:0009522 ... A0A6J4B0E7 33033236
    463 6ly5:b (2.38) BS02 CLA 1.97.1.12 GO:0009522 ... A0A6J4B0E7 33033236
    464 6ly5:b (2.38) BS03 CLA 1.97.1.12 GO:0009522 ... A0A6J4B0E7 33033236
    465 6ly5:b (2.38) BS04 CLA 1.97.1.12 GO:0009522 ... A0A6J4B0E7 33033236
    466 6ly5:b (2.38) BS05 CLA 1.97.1.12 GO:0009522 ... A0A6J4B0E7 33033236
    467 6ly5:b (2.38) BS06 CLA 1.97.1.12 GO:0009522 ... A0A6J4B0E7 33033236
    468 6ly5:b (2.38) BS07 CLA 1.97.1.12 GO:0009522 ... A0A6J4B0E7 33033236
    469 6ly5:b (2.38) BS08 CLA 1.97.1.12 GO:0009522 ... A0A6J4B0E7 33033236
    470 6ly5:b (2.38) BS09 SF4 1.97.1.12 GO:0009522 ... A0A6J4B0E7 33033236
    471 6ly5:b (2.38) BS10 CLA 1.97.1.12 GO:0009522 ... A0A6J4B0E7 33033236
    472 6ly5:b (2.38) BS11 CLA 1.97.1.12 GO:0009522 ... A0A6J4B0E7 33033236
    473 6ly5:b (2.38) BS12 CLA 1.97.1.12 GO:0009522 ... A0A6J4B0E7 33033236
    474 6ly5:b (2.38) BS13 CLA 1.97.1.12 GO:0009522 ... A0A6J4B0E7 33033236
    475 6ly5:b (2.38) BS14 CLA 1.97.1.12 GO:0009522 ... A0A6J4B0E7 33033236
    476 6ly5:b (2.38) BS15 CLA 1.97.1.12 GO:0009522 ... A0A6J4B0E7 33033236
    477 6ly5:b (2.38) BS16 CLA 1.97.1.12 GO:0009522 ... A0A6J4B0E7 33033236
    478 6ly5:b (2.38) BS17 CLA 1.97.1.12 GO:0009522 ... A0A6J4B0E7 33033236
    479 6ly5:b (2.38) BS18 CLA 1.97.1.12 GO:0009522 ... A0A6J4B0E7 33033236
    480 6ly5:b (2.38) BS19 CLA 1.97.1.12 GO:0009522 ... A0A6J4B0E7 33033236
    481 6ly5:b (2.38) BS20 CLA 1.97.1.12 GO:0009522 ... A0A6J4B0E7 33033236
    482 6ly5:b (2.38) BS21 CLA 1.97.1.12 GO:0009522 ... A0A6J4B0E7 33033236
    483 6ly5:b (2.38) BS22 CLA 1.97.1.12 GO:0009522 ... A0A6J4B0E7 33033236
    484 6ly5:b (2.38) BS23 CLA 1.97.1.12 GO:0009522 ... A0A6J4B0E7 33033236
    485 6ly5:b (2.38) BS24 CLA 1.97.1.12 GO:0009522 ... A0A6J4B0E7 33033236
    486 6ly5:b (2.38) BS25 CLA 1.97.1.12 GO:0009522 ... A0A6J4B0E7 33033236
    487 6ly5:b (2.38) BS26 CLA 1.97.1.12 GO:0009522 ... A0A6J4B0E7 33033236
    488 6ly5:b (2.38) BS27 CLA 1.97.1.12 GO:0009522 ... A0A6J4B0E7 33033236
    489 6ly5:b (2.38) BS28 CLA 1.97.1.12 GO:0009522 ... A0A6J4B0E7 33033236
    490 6ly5:b (2.38) BS29 CLA 1.97.1.12 GO:0009522 ... A0A6J4B0E7 33033236
    491 6ly5:b (2.38) BS30 CLA 1.97.1.12 GO:0009522 ... A0A6J4B0E7 33033236
    492 6ly5:b (2.38) BS31 CLA 1.97.1.12 GO:0009522 ... A0A6J4B0E7 33033236
    493 6ly5:b (2.38) BS32 CLA 1.97.1.12 GO:0009522 ... A0A6J4B0E7 33033236
    494 6ly5:b (2.38) BS33 CLA 1.97.1.12 GO:0009522 ... A0A6J4B0E7 33033236
    495 6ly5:b (2.38) BS34 CLA 1.97.1.12 GO:0009522 ... A0A6J4B0E7 33033236
    496 6ly5:b (2.38) BS35 CLA 1.97.1.12 GO:0009522 ... A0A6J4B0E7 33033236
    497 6ly5:b (2.38) BS36 CLA 1.97.1.12 GO:0009522 ... A0A6J4B0E7 33033236
    498 6ly5:b (2.38) BS37 CLA 1.97.1.12 GO:0009522 ... A0A6J4B0E7 33033236
    499 6ly5:b (2.38) BS38 CLA 1.97.1.12 GO:0009522 ... A0A6J4B0E7 33033236
    500 6ly5:b (2.38) BS39 CLA 1.97.1.12 GO:0009522 ... A0A6J4B0E7 33033236
    501 6ly5:b (2.38) BS40 CLA 1.97.1.12 GO:0009522 ... A0A6J4B0E7 33033236
    502 6ly5:b (2.38) BS41 CLA 1.97.1.12 GO:0009522 ... A0A6J4B0E7 33033236
    503 6ly5:b (2.38) BS42 CLA 1.97.1.12 GO:0009522 ... A0A6J4B0E7 33033236
    504 6ly5:b (2.38) BS43 CLA 1.97.1.12 GO:0009522 ... A0A6J4B0E7 33033236
    505 6ly5:b (2.38) BS44 CLA 1.97.1.12 GO:0009522 ... A0A6J4B0E7 33033236
    506 6ly5:b (2.38) BS45 PQN 1.97.1.12 GO:0009522 ... A0A6J4B0E7 33033236
    507 6ly5:b (2.38) BS46 CLA 1.97.1.12 GO:0009522 ... A0A6J4B0E7 33033236
    508 6ly5:c (2.38) BS01 SF4 1.97.1.12 GO:0009055 ... P10793 33033236
    509 6ly5:c (2.38) BS02 SF4 1.97.1.12 GO:0009055 ... P10793 33033236
    510 6ly5:f (2.38) BS01 CLA ? GO:0009522 ... P12355 33033236
    511 6ly5:f (2.38) BS02 CLA ? GO:0009522 ... P12355 33033236
    512 6ly5:f (2.38) BS03 CLA ? GO:0009522 ... P12355 33033236
    513 6ly5:f (2.38) BS04 CLA ? GO:0009522 ... P12355 33033236
    514 6ly5:f (2.38) BS05 CLA ? GO:0009522 ... P12355 33033236
    515 6ly5:f (2.38) BS06 CLA ? GO:0009522 ... P12355 33033236
    516 6ly5:h (2.38) BS01 CLA ? N/A A0A6J4B118 33033236
    517 6ly5:h (2.38) BS02 CLA ? N/A A0A6J4B118 33033236
    518 6ly5:h (2.38) BS03 A86 ? N/A A0A6J4B118 33033236
    519 6ly5:h (2.38) BS04 CLA ? N/A A0A6J4B118 33033236
    520 6ly5:h (2.38) BS05 A86 ? N/A A0A6J4B118 33033236
    521 6ly5:i (2.38) BS01 CLA ? GO:0009507 ... P17227 33033236
    522 6ly5:i (2.38) BS02 CLA ? GO:0009507 ... P17227 33033236
    523 6ly5:i (2.38) BS03 CLA ? GO:0009507 ... P17227 33033236
    524 6ly5:i (2.38) BS04 CLA ? GO:0009507 ... P17227 33033236
    525 6ly5:j (2.38) BS01 CLA ? GO:0009507 ... A4GGC6 33033236
    526 6ly5:j (2.38) BS02 CLA ? GO:0009507 ... A4GGC6 33033236
    527 6ly5:j (2.38) BS03 CLA ? GO:0009507 ... A4GGC6 33033236
    528 6ly5:j (2.38) BS04 CLA ? GO:0009507 ... A4GGC6 33033236
    529 6ly5:j (2.38) BS05 CLA ? GO:0009507 ... A4GGC6 33033236
    530 6ly5:j (2.38) BS06 DD6 ? GO:0009507 ... A4GGC6 33033236
    531 6ly5:j (2.38) BS07 CLA ? GO:0009507 ... A4GGC6 33033236
    532 6ly5:l (2.38) BS01 CLA ? GO:0009522 ... A0A6J4B0N3 33033236
    533 6ly5:l (2.38) BS02 CLA ? GO:0009522 ... A0A6J4B0N3 33033236
    534 6ly5:l (2.38) BS03 CLA ? GO:0009522 ... A0A6J4B0N3 33033236
    535 6ly5:l (2.38) BS04 CLA ? GO:0009522 ... A0A6J4B0N3 33033236
    536 6ly5:l (2.38) BS05 CLA ? GO:0009522 ... A0A6J4B0N3 33033236
    537 6ly5:l (2.38) BS06 CLA ? GO:0009522 ... A0A6J4B0N3 33033236
    538 6ly5:l (2.38) BS07 CLA ? GO:0009522 ... A0A6J4B0N3 33033236
    539 6ly5:l (2.38) BS08 CLA ? GO:0009522 ... A0A6J4B0N3 33033236

    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023)(download the PDF file).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
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