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BioLiP
Download all results in tab-seperated text for 56 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1 5yzg:A (4.1) BS01 rna ? GO:0000244 ... Q6P2Q9 29301961
    2 5yzg:A (4.1) BS02 rna ? GO:0000244 ... Q6P2Q9 29301961
    3 5yzg:A (4.1) BS03 rna ? GO:0000244 ... Q6P2Q9 29301961
    4 5yzg:A (4.1) BS04 rna ? GO:0000244 ... Q6P2Q9 29301961
    5 5yzg:A (4.1) BS05 peptide ? GO:0000244 ... Q6P2Q9 29301961
    6 5yzg:A (4.1) BS06 IHP ? GO:0000244 ... Q6P2Q9 29301961
    7 5yzg:C (4.1) BS01 rna ? GO:0000398 ... Q15029 29301961
    8 5yzg:C (4.1) BS02 GTP ? GO:0000398 ... Q15029 29301961
    9 5yzg:D (4.1) BS01 ADP 3.6.4.13 GO:0000354 ... O75643 29301961
    10 5yzg:D (4.1) BS02 ADP 3.6.4.13 GO:0000354 ... O75643 29301961
    11 5yzg:J (4.1) BS01 rna ? GO:0000245 ... Q9BZJ0 29301961
    12 5yzg:L (4.1) BS01 rna ? GO:0000077 ... Q99459 29301961
    13 5yzg:M (4.1) BS01 rna ? GO:0000398 ... O95926 29301961
    14 5yzg:M (4.1) BS02 rna ? GO:0000398 ... O95926 29301961
    15 5yzg:N (4.1) BS01 rna ? GO:0000398 ... P41223 29301961
    16 5yzg:N (4.1) BS02 ZN ? GO:0000398 ... P41223 29301961
    17 5yzg:N (4.1) BS03 ZN ? GO:0000398 ... P41223 29301961
    18 5yzg:N (4.1) BS04 ZN ? GO:0000398 ... P41223 29301961
    19 5yzg:O (4.1) BS01 rna ? GO:0000398 ... Q9NW64 29301961
    20 5yzg:O (4.1) BS02 rna ? GO:0000398 ... Q9NW64 29301961
    21 5yzg:O (4.1) BS03 ZN ? GO:0000398 ... Q9NW64 29301961
    22 5yzg:O (4.1) BS04 ZN ? GO:0000398 ... Q9NW64 29301961
    23 5yzg:O (4.1) BS05 ZN ? GO:0000398 ... Q9NW64 29301961
    24 5yzg:P (4.1) BS01 rna ? GO:0000398 ... Q9P013 29301961
    25 5yzg:R (4.1) BS01 rna ? GO:0000122 ... Q13573 29301961
    26 5yzg:R (4.1) BS02 rna ? GO:0000122 ... Q13573 29301961
    27 5yzg:T (4.1) BS01 rna ? GO:0000398 ... O43660 29301961
    28 5yzg:V (4.1) BS01 peptide ? GO:0000398 ... Q9HCG8 29301961
    29 5yzg:W (4.1) BS01 rna ? GO:0000398 ... O60508 29301961
    30 5yzg:X (4.1) BS01 rna ? GO:0000398 ... Q9NXE8 29301961
    31 5yzg:X (4.1) BS02 rna ? GO:0000398 ... Q9NXE8 29301961
    32 5yzg:Y (4.1) BS01 rna ? GO:0000349 ... Q9BW85 29301961
    33 5yzg:Y (4.1) BS02 rna ? GO:0000349 ... Q9BW85 29301961
    34 5yzg:Y (4.1) BS03 rna ? GO:0000349 ... Q9BW85 29301961
    35 5yzg:Y (4.1) BS04 ZN ? GO:0000349 ... Q9BW85 29301961
    36 5yzg:a (4.1) BS01 rna ? GO:0000243 ... P62318 29301961
    37 5yzg:b (4.1) BS01 rna ? GO:0000387 ... P14678 29301961
    38 5yzg:c (4.1) BS01 rna ? GO:0000243 ... P62314 29301961
    39 5yzg:d (4.1) BS01 rna ? GO:0000245 ... P62316 29301961
    40 5yzg:e (4.1) BS01 rna ? GO:0000245 ... P62304 29301961
    41 5yzg:f (4.1) BS01 rna ? GO:0000387 ... P62306 29301961
    42 5yzg:g (4.1) BS01 rna ? GO:0000245 ... P62308 29301961
    43 5yzg:h (4.1) BS01 rna ? GO:0000243 ... P62318 29301961
    44 5yzg:i (4.1) BS01 rna ? GO:0000387 ... P14678 29301961
    45 5yzg:j (4.1) BS01 rna ? GO:0000243 ... P62314 29301961
    46 5yzg:k (4.1) BS01 rna ? GO:0000245 ... P62316 29301961
    47 5yzg:l (4.1) BS01 rna ? GO:0000245 ... P62304 29301961
    48 5yzg:m (4.1) BS01 rna ? GO:0000387 ... P62306 29301961
    49 5yzg:n (4.1) BS01 rna ? GO:0000245 ... P62308 29301961
    50 5yzg:p (4.1) BS01 rna ? GO:0000398 ... P08579 29301961
    51 5yzg:s (4.1) BS01 rna 2.3.2.27 GO:0000077 ... Q9UMS4 29301961
    52 5yzg:u (4.1) BS01 rna 3.6.4.13 GO:0000184 ... P38919 29301961
    53 5yzg:u (4.1) BS02 peptide 3.6.4.13 GO:0000184 ... P38919 29301961
    54 5yzg:u (4.1) BS03 ATP 3.6.4.13 GO:0000184 ... P38919 29301961
    55 5yzg:v (4.1) BS01 peptide ? GO:0000184 ... Q96A72 29301961
    56 5yzg:y (4.1) BS01 rna ? GO:0000350 ... Q9ULR0 29301961
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023)(download the PDF file).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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