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BioLiP
Download all results in tab-seperated text for 237 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    201 5vyc:f1 (6.0) BS01 rna ? GO:0003735 ... Q5RKT7 28723557
    202 5vyc:f1 (6.0) BS02 rna ? GO:0003735 ... Q5RKT7 28723557
    203 5vyc:f2 (6.0) BS01 rna ? GO:0003735 ... Q5RKT7 28723557
    204 5vyc:f2 (6.0) BS02 rna ? GO:0003735 ... Q5RKT7 28723557
    205 5vyc:f2 (6.0) BS03 ZN ? GO:0003735 ... Q5RKT7 28723557
    206 5vyc:f3 (6.0) BS01 rna ? GO:0003735 ... Q5RKT7 28723557
    207 5vyc:f3 (6.0) BS02 ZN ? GO:0003735 ... Q5RKT7 28723557
    208 5vyc:f4 (6.0) BS01 rna ? GO:0003735 ... Q5RKT7 28723557
    209 5vyc:f4 (6.0) BS02 ZN ? GO:0003735 ... Q5RKT7 28723557
    210 5vyc:f5 (6.0) BS01 rna ? GO:0003735 ... Q5RKT7 28723557
    211 5vyc:f5 (6.0) BS02 ZN ? GO:0003735 ... Q5RKT7 28723557
    212 5vyc:f6 (6.0) BS01 rna ? GO:0003735 ... Q5RKT7 28723557
    213 5vyc:f6 (6.0) BS02 ZN ? GO:0003735 ... Q5RKT7 28723557
    214 5vyc:g1 (6.0) BS01 rna ? GO:0001891 ... P63244 28723557
    215 5vyc:g2 (6.0) BS01 rna ? GO:0001891 ... P63244 28723557
    216 5vyc:g3 (6.0) BS01 rna ? GO:0001891 ... P63244 28723557
    217 5vyc:g4 (6.0) BS01 rna ? GO:0001891 ... P63244 28723557
    218 5vyc:g5 (6.0) BS01 rna ? GO:0001891 ... P63244 28723557
    219 5vyc:g6 (6.0) BS01 rna ? GO:0001891 ... P63244 28723557
    220 5vyc:k1 (6.0) BS01 rna ? GO:0000339 ... Q9ULC4 28723557
    221 5vyc:k1 (6.0) BS02 rna ? GO:0000339 ... Q9ULC4 28723557
    222 5vyc:k2 (6.0) BS01 rna ? GO:0000339 ... Q9ULC4 28723557
    223 5vyc:k2 (6.0) BS02 rna ? GO:0000339 ... Q9ULC4 28723557
    224 5vyc:k3 (6.0) BS01 rna ? GO:0000339 ... Q9ULC4 28723557
    225 5vyc:k3 (6.0) BS02 rna ? GO:0000339 ... Q9ULC4 28723557
    226 5vyc:k4 (6.0) BS01 rna ? GO:0000339 ... Q9ULC4 28723557
    227 5vyc:k4 (6.0) BS02 rna ? GO:0000339 ... Q9ULC4 28723557
    228 5vyc:k5 (6.0) BS01 rna ? GO:0000339 ... Q9ULC4 28723557
    229 5vyc:k5 (6.0) BS02 rna ? GO:0000339 ... Q9ULC4 28723557
    230 5vyc:k6 (6.0) BS01 rna ? GO:0000339 ... Q9ULC4 28723557
    231 5vyc:k6 (6.0) BS02 rna ? GO:0000339 ... Q9ULC4 28723557
    232 5vyc:l1 (6.0) BS01 rna ? GO:0001731 ... O43583 28723557
    233 5vyc:l2 (6.0) BS01 rna ? GO:0001731 ... O43583 28723557
    234 5vyc:l3 (6.0) BS01 rna ? GO:0001731 ... O43583 28723557
    235 5vyc:l4 (6.0) BS01 rna ? GO:0001731 ... O43583 28723557
    236 5vyc:l5 (6.0) BS01 rna ? GO:0001731 ... O43583 28723557
    237 5vyc:l6 (6.0) BS01 rna ? GO:0001731 ... O43583 28723557
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023)(download the PDF file).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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