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BioLiP
Download all results in tab-seperated text for 423 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.
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    # PDB
    (Resolution Å)
    Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    401 5oy0:j (2.501) BS01 CLA ? GO:0009522 ... Q55329 29414678
    402 5oy0:j (2.501) BS02 CLA ? GO:0009522 ... Q55329 29414678
    403 5oy0:j (2.501) BS03 CLA ? GO:0009522 ... Q55329 29414678
    404 5oy0:j (2.501) BS04 CLA ? GO:0009522 ... Q55329 29414678
    405 5oy0:j (2.501) BS05 ZEX ? GO:0009522 ... Q55329 29414678
    406 5oy0:j (2.501) BS06 CLA ? GO:0009522 ... Q55329 29414678
    407 5oy0:k (2.501) BS01 CLA ? GO:0009522 ... P74564 29414678
    408 5oy0:k (2.501) BS02 CLA ? GO:0009522 ... P74564 29414678
    409 5oy0:k (2.501) BS03 CLA ? GO:0009522 ... P74564 29414678
    410 5oy0:k (2.501) BS04 CLA ? GO:0009522 ... P74564 29414678
    411 5oy0:l (2.501) BS01 CLA ? GO:0005886 ... P37277 29414678
    412 5oy0:l (2.501) BS02 CLA ? GO:0005886 ... P37277 29414678
    413 5oy0:l (2.501) BS03 CLA ? GO:0005886 ... P37277 29414678
    414 5oy0:l (2.501) BS04 CLA ? GO:0005886 ... P37277 29414678
    415 5oy0:l (2.501) BS05 ECH ? GO:0005886 ... P37277 29414678
    416 5oy0:l (2.501) BS06 CA ? GO:0005886 ... P37277 29414678
    417 5oy0:l (2.501) BS07 CLA ? GO:0005886 ... P37277 29414678
    418 5oy0:l (2.501) BS08 CLA ? GO:0005886 ... P37277 29414678
    419 5oy0:l (2.501) BS09 CLA ? GO:0005886 ... P37277 29414678
    420 5oy0:l (2.501) BS10 CLA ? GO:0005886 ... P37277 29414678
    421 5oy0:m (2.501) BS01 CLA ? GO:0009522 ... P72986 29414678
    422 5oy0:m (2.501) BS02 CLA ? GO:0009522 ... P72986 29414678
    423 5oy0:m (2.501) BS03 ECH ? GO:0009522 ... P72986 29414678

    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023)(download the PDF file).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
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