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BioLiP
Download all results in tab-seperated text for 46 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1 5hyn:A (2.95) BS01 peptide 2.1.1.356 GO:0000082 ... Q15910 27121947
    2 5hyn:A (2.95) BS02 peptide 2.1.1.356 GO:0000082 ... Q15910 27121947
    3 5hyn:A (2.95) BS03 ZN 2.1.1.356 GO:0000082 ... Q15910 27121947
    4 5hyn:A (2.95) BS04 ZN 2.1.1.356 GO:0000082 ... Q15910 27121947
    5 5hyn:A (2.95) BS05 ZN 2.1.1.356 GO:0000082 ... Q15910 27121947
    6 5hyn:A (2.95) BS06 ZN 2.1.1.356 GO:0000082 ... Q15910 27121947
    7 5hyn:A (2.95) BS07 ZN 2.1.1.356 GO:0000082 ... Q15910 27121947
    8 5hyn:A (2.95) BS08 ZN 2.1.1.356 GO:0000082 ... Q15910 27121947
    9 5hyn:A (2.95) BS09 ZN 2.1.1.356 GO:0000082 ... Q15910 27121947
    10 5hyn:A (2.95) BS10 ZN 2.1.1.356 GO:0000082 ... Q15910 27121947
    11 5hyn:A (2.95) BS11 SAH 2.1.1.356 GO:0000082 ... Q15910 27121947 BindingDB: IC50=467nM
    12 5hyn:B (2.95) BS01 peptide ? N/A O75530 27121947
    13 5hyn:F (2.95) BS01 peptide 2.1.1.356 GO:0000082 ... Q15910 27121947
    14 5hyn:F (2.95) BS02 peptide 2.1.1.356 GO:0000082 ... Q15910 27121947
    15 5hyn:F (2.95) BS03 ZN 2.1.1.356 GO:0000082 ... Q15910 27121947
    16 5hyn:F (2.95) BS04 ZN 2.1.1.356 GO:0000082 ... Q15910 27121947
    17 5hyn:F (2.95) BS05 ZN 2.1.1.356 GO:0000082 ... Q15910 27121947
    18 5hyn:F (2.95) BS06 ZN 2.1.1.356 GO:0000082 ... Q15910 27121947
    19 5hyn:F (2.95) BS07 ZN 2.1.1.356 GO:0000082 ... Q15910 27121947
    20 5hyn:F (2.95) BS08 ZN 2.1.1.356 GO:0000082 ... Q15910 27121947
    21 5hyn:F (2.95) BS09 ZN 2.1.1.356 GO:0000082 ... Q15910 27121947
    22 5hyn:F (2.95) BS10 ZN 2.1.1.356 GO:0000082 ... Q15910 27121947
    23 5hyn:F (2.95) BS11 SAH 2.1.1.356 GO:0000082 ... Q15910 27121947 BindingDB: IC50=467nM
    24 5hyn:G (2.95) BS01 peptide ? N/A O75530 27121947
    25 5hyn:K (2.95) BS01 peptide 2.1.1.356 GO:0000082 ... Q15910 27121947
    26 5hyn:K (2.95) BS02 ZN 2.1.1.356 GO:0000082 ... Q15910 27121947
    27 5hyn:K (2.95) BS03 ZN 2.1.1.356 GO:0000082 ... Q15910 27121947
    28 5hyn:K (2.95) BS04 ZN 2.1.1.356 GO:0000082 ... Q15910 27121947
    29 5hyn:K (2.95) BS05 ZN 2.1.1.356 GO:0000082 ... Q15910 27121947
    30 5hyn:K (2.95) BS06 ZN 2.1.1.356 GO:0000082 ... Q15910 27121947
    31 5hyn:K (2.95) BS07 ZN 2.1.1.356 GO:0000082 ... Q15910 27121947
    32 5hyn:K (2.95) BS08 ZN 2.1.1.356 GO:0000082 ... Q15910 27121947
    33 5hyn:K (2.95) BS09 ZN 2.1.1.356 GO:0000082 ... Q15910 27121947
    34 5hyn:K (2.95) BS10 SAH 2.1.1.356 GO:0000082 ... Q15910 27121947 BindingDB: IC50=467nM
    35 5hyn:L (2.95) BS01 peptide ? N/A O75530 27121947
    36 5hyn:Q (2.95) BS01 peptide 2.1.1.356 GO:0000082 ... Q15910 27121947
    37 5hyn:Q (2.95) BS02 ZN 2.1.1.356 GO:0000082 ... Q15910 27121947
    38 5hyn:Q (2.95) BS03 ZN 2.1.1.356 GO:0000082 ... Q15910 27121947
    39 5hyn:Q (2.95) BS04 ZN 2.1.1.356 GO:0000082 ... Q15910 27121947
    40 5hyn:Q (2.95) BS05 ZN 2.1.1.356 GO:0000082 ... Q15910 27121947
    41 5hyn:Q (2.95) BS06 ZN 2.1.1.356 GO:0000082 ... Q15910 27121947
    42 5hyn:Q (2.95) BS07 ZN 2.1.1.356 GO:0000082 ... Q15910 27121947
    43 5hyn:Q (2.95) BS08 ZN 2.1.1.356 GO:0000082 ... Q15910 27121947
    44 5hyn:Q (2.95) BS09 ZN 2.1.1.356 GO:0000082 ... Q15910 27121947
    45 5hyn:Q (2.95) BS10 SAH 2.1.1.356 GO:0000082 ... Q15910 27121947 BindingDB: IC50=467nM
    46 5hyn:R (2.95) BS01 peptide ? N/A O75530 27121947
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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