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BioLiP
Download all results in tab-seperated text for 93 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.
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    # PDB
    (Resolution Å)
    Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1 5aj4:AB (3.8) BS01 rna ? GO:0003735 ... F1S001 25837512
    2 5aj4:AC (3.8) BS01 rna ? GO:0005739 ... F1ST79 25837512
    3 5aj4:AE (3.8) BS01 rna ? GO:0003723 ... F1SU66 25837512
    4 5aj4:AE (3.8) BS02 rna ? GO:0003723 ... F1SU66 25837512
    5 5aj4:AF (3.8) BS01 rna N/A GO:0003735 ... N/A 25837512
    6 5aj4:AG (3.8) BS01 rna N/A GO:0006412 ... N/A 25837512
    7 5aj4:AG (3.8) BS02 rna N/A GO:0006412 ... N/A 25837512
    8 5aj4:AI (3.8) BS01 rna N/A GO:0003735 ... N/A 25837512
    9 5aj4:AJ (3.8) BS01 rna N/A GO:0005763 ... N/A 25837512
    10 5aj4:AJ (3.8) BS02 peptide N/A GO:0005763 ... N/A 25837512
    11 5aj4:AK (3.8) BS01 rna N/A GO:0003735 ... N/A 25837512
    12 5aj4:AL (3.8) BS01 rna N/A GO:0003735 ... N/A 25837512
    13 5aj4:AN (3.8) BS01 rna N/A GO:0003735 ... N/A 25837512
    14 5aj4:AO (3.8) BS01 rna N/A GO:0003735 ... N/A 25837512
    15 5aj4:AP (3.8) BS01 rna N/A GO:0003735 ... N/A 25837512
    16 5aj4:AQ (3.8) BS01 rna ? GO:0003735 ... A0A8D1UDM1 25837512
    17 5aj4:AR (3.8) BS01 rna N/A GO:0003735 ... N/A 25837512
    18 5aj4:AR (3.8) BS02 ZN N/A GO:0003735 ... N/A 25837512
    19 5aj4:AU (3.8) BS01 rna N/A GO:0003735 ... N/A 25837512
    20 5aj4:Ab (3.8) BS01 rna N/A GO:0003735 ... N/A 25837512
    21 5aj4:Ac (3.8) BS01 rna N/A GO:0003735 ... N/A 25837512
    22 5aj4:Ac (3.8) BS02 ZN N/A GO:0003735 ... N/A 25837512
    23 5aj4:Ad (3.8) BS01 rna ? GO:0005763 ... F1S8A5 25837512
    24 5aj4:Ae (3.8) BS01 rna N/A N/A N/A 25837512
    25 5aj4:Ag (3.8) BS01 rna N/A GO:0005761 ... N/A 25837512
    26 5aj4:Ag (3.8) BS02 GDP N/A GO:0005761 ... N/A 25837512
    27 5aj4:Ah (3.8) BS01 peptide ? GO:0003735 ... F1RME2 25837512
    28 5aj4:Ai (3.8) BS01 rna ? N/A A0A4X1V2H3 25837512
    29 5aj4:Ai (3.8) BS02 peptide ? N/A A0A4X1V2H3 25837512
    30 5aj4:Aj (3.8) BS01 rna N/A GO:0003735 ... N/A 25837512
    31 5aj4:Am (3.8) BS01 rna ? GO:0005739 ... A0A4X1SZV4 25837512
    32 5aj4:An (3.8) BS01 rna N/A N/A N/A 25837512
    33 5aj4:An (3.8) BS02 rna N/A N/A N/A 25837512
    34 5aj4:Ao (3.8) BS01 peptide ? GO:0005739 ... K7GKS8 25837512
    35 5aj4:Ap (3.8) BS01 rna ? GO:0003735 ... Q767K8 25837512
    36 5aj4:Ap (3.8) BS02 ZN ? GO:0003735 ... Q767K8 25837512
    37 5aj4:B0 (3.8) BS01 rna ? GO:0003735 ... A0A4X1U0F6 25837512
    38 5aj4:B0 (3.8) BS02 rna ? GO:0003735 ... A0A4X1U0F6 25837512
    39 5aj4:B1 (3.8) BS01 rna ? GO:0003735 ... A0A0R4J8D5 25837512
    40 5aj4:B2 (3.8) BS01 rna N/A GO:0003735 ... N/A 25837512
    41 5aj4:B3 (3.8) BS01 rna ? GO:0003735 ... A0A8D1MIP3 25837512
    42 5aj4:B4 (3.8) BS01 rna N/A GO:0003735 ... N/A 25837512
    43 5aj4:B5 (3.8) BS01 rna ? GO:0003735 ... I3LTC4 25837512
    44 5aj4:B5 (3.8) BS02 ZN ? GO:0003735 ... I3LTC4 25837512
    45 5aj4:B6 (3.8) BS01 rna N/A GO:0003735 ... N/A 25837512
    46 5aj4:B7 (3.8) BS01 rna ? GO:0003735 ... W5IDC1 25837512
    47 5aj4:B8 (3.8) BS01 rna ? GO:0003735 ... F1SVC5 25837512
    48 5aj4:B9 (3.8) BS01 rna N/A GO:0003735 ... N/A 25837512
    49 5aj4:B9 (3.8) BS02 ZN N/A GO:0003735 ... N/A 25837512
    50 5aj4:BD (3.8) BS01 rna ? GO:0003735 ... F1RRN2 25837512
    51 5aj4:BE (3.8) BS01 rna N/A GO:0003735 ... N/A 25837512
    52 5aj4:BF (3.8) BS01 rna N/A GO:0003735 ... N/A 25837512
    53 5aj4:BI (3.8) BS01 rna ? GO:0003735 ... I3LR45 25837512
    54 5aj4:BJ (3.8) BS01 rna ? GO:0005840 ... F1RWJ0 25837512
    55 5aj4:BK (3.8) BS01 rna ? GO:0003735 ... F1RU54 25837512
    56 5aj4:BN (3.8) BS01 rna N/A GO:0003735 ... N/A 25837512
    57 5aj4:BO (3.8) BS01 rna ? GO:0003735 ... F1RQV7 25837512
    58 5aj4:BP (3.8) BS01 rna N/A GO:0003735 ... N/A 25837512
    59 5aj4:BQ (3.8) BS01 rna ? GO:0003735 ... F1RI89 25837512
    60 5aj4:BQ (3.8) BS02 rna ? GO:0003735 ... F1RI89 25837512
    61 5aj4:BR (3.8) BS01 rna ? GO:0003735 ... F1RMQ4 25837512
    62 5aj4:BS (3.8) BS01 rna ? GO:0003735 ... A0A0R4J8D5 25837512
    63 5aj4:BS (3.8) BS02 rna ? GO:0003735 ... A0A0R4J8D5 25837512
    64 5aj4:BT (3.8) BS01 rna ? GO:0003735 ... I3LNJ0 25837512
    65 5aj4:BU (3.8) BS01 rna N/A GO:0003735 ... N/A 25837512
    66 5aj4:BV (3.8) BS01 rna ? GO:0003723 ... F1RY70 25837512
    67 5aj4:BW (3.8) BS01 rna N/A GO:0003735 ... N/A 25837512
    68 5aj4:BX (3.8) BS01 rna N/A GO:0003735 ... N/A 25837512
    69 5aj4:BX (3.8) BS02 MG N/A GO:0003735 ... N/A 25837512
    70 5aj4:BY (3.8) BS01 rna ? GO:0003723 ... F1RHJ1 25837512
    71 5aj4:Ba (3.8) BS01 rna N/A GO:0003735 ... N/A 25837512
    72 5aj4:Bb (3.8) BS01 rna ? GO:0005739 ... F1RW03 25837512
    73 5aj4:Bb (3.8) BS02 rna ? GO:0005739 ... F1RW03 25837512
    74 5aj4:Bd (3.8) BS01 rna N/A GO:0005762 ... N/A 25837512
    75 5aj4:Be (3.8) BS01 rna N/A GO:0003735 ... N/A 25837512
    76 5aj4:Be (3.8) BS02 MG N/A GO:0003735 ... N/A 25837512
    77 5aj4:Bf (3.8) BS01 rna N/A N/A N/A 25837512
    78 5aj4:Bg (3.8) BS01 rna ? GO:0003735 ... F1S8U4 25837512
    79 5aj4:Bh (3.8) BS01 rna ? GO:0003723 ... F1SR64 25837512
    80 5aj4:Bi (3.8) BS01 rna N/A N/A N/A 25837512
    81 5aj4:Bk (3.8) BS01 rna N/A GO:0005761 ... N/A 25837512
    82 5aj4:Bk (3.8) BS02 rna N/A GO:0005761 ... N/A 25837512
    83 5aj4:Bl (3.8) BS01 rna N/A GO:0003735 ... N/A 25837512
    84 5aj4:Bn (3.8) BS01 rna N/A GO:0003735 ... N/A 25837512
    85 5aj4:Bo (3.8) BS01 rna ? GO:0003735 ... F1S9B7 25837512
    86 5aj4:Bq (3.8) BS01 rna N/A N/A N/A 25837512
    87 5aj4:Bt (3.8) BS01 rna N/A GO:0005761 ... N/A 25837512
    88 5aj4:Bt (3.8) BS02 MG N/A GO:0005761 ... N/A 25837512
    89 5aj4:Bv (3.8) BS01 rna N/A GO:0005634 ... N/A 25837512
    90 5aj4:Bw (3.8) BS01 rna N/A GO:0003735 ... N/A 25837512
    91 5aj4:Bx (3.8) BS01 rna ? GO:0003735 ... F1RRH6 25837512
    92 5aj4:Bx (3.8) BS02 ZN ? GO:0003735 ... F1RRH6 25837512
    93 5aj4:Bz (3.8) BS01 rna N/A N/A N/A 25837512

    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023)(download the PDF file).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
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