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BioLiP
Download all results in tab-seperated text for 153 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1 4v63:AB (3.207) BS01 rna ? GO:0003735 ... P62662 18596689
    2 4v63:AC (3.207) BS01 rna ? GO:0003676 ... P62663 18596689
    3 4v63:AC (3.207) BS02 MG ? GO:0003676 ... P62663 18596689
    4 4v63:AC (3.207) BS03 MG ? GO:0003676 ... P62663 18596689
    5 4v63:AD (3.207) BS01 rna ? GO:0003723 ... P62664 18596689
    6 4v63:AD (3.207) BS02 MG ? GO:0003723 ... P62664 18596689
    7 4v63:AE (3.207) BS01 rna ? GO:0003723 ... P62665 18596689
    8 4v63:AF (3.207) BS01 rna ? GO:0003735 ... P62666 18596689
    9 4v63:AG (3.207) BS01 rna ? GO:0000028 ... P62667 18596689
    10 4v63:AG (3.207) BS02 rna ? GO:0000028 ... P62667 18596689
    11 4v63:AH (3.207) BS01 rna ? GO:0003735 ... P62668 18596689
    12 4v63:AH (3.207) BS02 MG ? GO:0003735 ... P62668 18596689
    13 4v63:AI (3.207) BS01 rna ? GO:0000049 ... P62669 18596689
    14 4v63:AI (3.207) BS02 rna ? GO:0000049 ... P62669 18596689
    15 4v63:AJ (3.207) BS01 rna ? GO:0000049 ... P62653 18596689
    16 4v63:AK (3.207) BS01 rna ? GO:0003735 ... P62654 18596689
    17 4v63:AK (3.207) BS02 rna ? GO:0003735 ... P62654 18596689
    18 4v63:AL (3.207) BS01 rna ? GO:0000049 ... P61941 18596689
    19 4v63:AM (3.207) BS01 rna ? GO:0000049 ... P62655 18596689
    20 4v63:AM (3.207) BS02 MG ? GO:0000049 ... P62655 18596689
    21 4v63:AN (3.207) BS01 rna ? GO:0003735 ... P62656 18596689
    22 4v63:AO (3.207) BS01 rna ? GO:0003735 ... P62657 18596689
    23 4v63:AO (3.207) BS02 rna ? GO:0003735 ... P62657 18596689
    24 4v63:AP (3.207) BS01 rna ? GO:0003735 ... P62238 18596689
    25 4v63:AQ (3.207) BS01 rna ? GO:0003735 ... P62658 18596689
    26 4v63:AR (3.207) BS01 rna ? GO:0003735 ... P62659 18596689
    27 4v63:AS (3.207) BS01 rna ? GO:0000028 ... P62660 18596689
    28 4v63:AT (3.207) BS01 rna ? GO:0003723 ... P62661 18596689
    29 4v63:AX (3.207) BS01 rna ? GO:0003747 ... Q72HB8 18596689
    30 4v63:AX (3.207) BS02 rna ? GO:0003747 ... Q72HB8 18596689
    31 4v63:AX (3.207) BS03 rna ? GO:0003747 ... Q72HB8 18596689
    32 4v63:AX (3.207) BS04 rna ? GO:0003747 ... Q72HB8 18596689
    33 4v63:AX (3.207) BS05 MG ? GO:0003747 ... Q72HB8 18596689
    34 4v63:AX (3.207) BS06 MG ? GO:0003747 ... Q72HB8 18596689
    35 4v63:AX (3.207) BS07 MG ? GO:0003747 ... Q72HB8 18596689
    36 4v63:AX (3.207) BS08 MG ? GO:0003747 ... Q72HB8 18596689
    37 4v63:B0 (3.207) BS01 rna ? GO:0003735 ... Q72HR3 18596689
    38 4v63:B0 (3.207) BS02 rna ? GO:0003735 ... Q72HR3 18596689
    39 4v63:B1 (3.207) BS01 rna ? GO:0003735 ... Q72G84 18596689
    40 4v63:B2 (3.207) BS01 rna ? GO:0003735 ... Q72I12 18596689
    41 4v63:B2 (3.207) BS02 MG ? GO:0003735 ... Q72I12 18596689
    42 4v63:B3 (3.207) BS01 rna ? GO:0003735 ... Q72I22 18596689
    43 4v63:B5 (3.207) BS01 rna ? GO:0003735 ... P62652 18596689
    44 4v63:B6 (3.207) BS01 rna ? GO:0003735 ... Q72GW3 18596689
    45 4v63:B7 (3.207) BS01 rna ? GO:0003735 ... P80340 18596689
    46 4v63:B8 (3.207) BS01 rna ? GO:0003735 ... Q72L77 18596689
    47 4v63:BD (3.207) BS01 rna ? GO:0002181 ... Q72I07 18596689
    48 4v63:BD (3.207) BS02 rna ? GO:0002181 ... Q72I07 18596689
    49 4v63:BE (3.207) BS01 rna ? GO:0003735 ... Q72I04 18596689
    50 4v63:BF (3.207) BS01 rna ? GO:0003735 ... Q72I05 18596689
    51 4v63:BF (3.207) BS02 MG ? GO:0003735 ... Q72I05 18596689
    52 4v63:BG (3.207) BS01 rna ? GO:0000049 ... Q72I16 18596689
    53 4v63:BG (3.207) BS02 rna ? GO:0000049 ... Q72I16 18596689
    54 4v63:BG (3.207) BS03 rna ? GO:0000049 ... Q72I16 18596689
    55 4v63:BG (3.207) BS04 MG ? GO:0000049 ... Q72I16 18596689
    56 4v63:BG (3.207) BS05 MG ? GO:0000049 ... Q72I16 18596689
    57 4v63:BH (3.207) BS01 rna ? GO:0002181 ... Q72I19 18596689
    58 4v63:BI (3.207) BS01 rna ? GO:0003735 ... Q72GV5 18596689
    59 4v63:BN (3.207) BS01 rna ? GO:0003729 ... Q72IN1 18596689
    60 4v63:BO (3.207) BS01 rna ? GO:0003735 ... Q72I14 18596689
    61 4v63:BO (3.207) BS02 rna ? GO:0003735 ... Q72I14 18596689
    62 4v63:BO (3.207) BS03 MG ? GO:0003735 ... Q72I14 18596689
    63 4v63:BO (3.207) BS04 MG ? GO:0003735 ... Q72I14 18596689
    64 4v63:BP (3.207) BS01 rna ? GO:0003735 ... Q72I23 18596689
    65 4v63:BQ (3.207) BS01 rna ? GO:0000049 ... Q72I11 18596689
    66 4v63:BQ (3.207) BS02 rna ? GO:0000049 ... Q72I11 18596689
    67 4v63:BQ (3.207) BS03 MG ? GO:0000049 ... Q72I11 18596689
    68 4v63:BR (3.207) BS01 rna ? GO:0003735 ... Q72I33 18596689
    69 4v63:BS (3.207) BS01 rna ? GO:0003735 ... Q72I20 18596689
    70 4v63:BS (3.207) BS02 rna ? GO:0003735 ... Q72I20 18596689
    71 4v63:BT (3.207) BS01 rna ? GO:0003735 ... Q72JU9 18596689
    72 4v63:BT (3.207) BS02 rna ? GO:0003735 ... Q72JU9 18596689
    73 4v63:BU (3.207) BS01 rna ? GO:0000027 ... Q72L76 18596689
    74 4v63:BV (3.207) BS01 rna ? GO:0003723 ... Q72HR2 18596689
    75 4v63:BW (3.207) BS01 rna ? GO:0003735 ... Q72I09 18596689
    76 4v63:BX (3.207) BS01 rna ? GO:0000027 ... Q72I06 18596689
    77 4v63:BY (3.207) BS01 rna ? GO:0003723 ... Q72I15 18596689
    78 4v63:BZ (3.207) BS01 rna ? GO:0003723 ... Q72IA7 18596689
    79 4v63:BZ (3.207) BS02 rna ? GO:0003723 ... Q72IA7 18596689
    80 4v63:CB (3.207) BS01 rna ? GO:0003735 ... P62662 18596689
    81 4v63:CC (3.207) BS01 rna ? GO:0003676 ... P62663 18596689
    82 4v63:CC (3.207) BS02 MG ? GO:0003676 ... P62663 18596689
    83 4v63:CD (3.207) BS01 rna ? GO:0003723 ... P62664 18596689
    84 4v63:CE (3.207) BS01 rna ? GO:0003723 ... P62665 18596689
    85 4v63:CF (3.207) BS01 rna ? GO:0003735 ... P62666 18596689
    86 4v63:CF (3.207) BS02 MG ? GO:0003735 ... P62666 18596689
    87 4v63:CG (3.207) BS01 rna ? GO:0000028 ... P62667 18596689
    88 4v63:CG (3.207) BS02 rna ? GO:0000028 ... P62667 18596689
    89 4v63:CG (3.207) BS03 MG ? GO:0000028 ... P62667 18596689
    90 4v63:CH (3.207) BS01 rna ? GO:0003735 ... P62668 18596689
    91 4v63:CI (3.207) BS01 rna ? GO:0000049 ... P62669 18596689
    92 4v63:CI (3.207) BS02 rna ? GO:0000049 ... P62669 18596689
    93 4v63:CJ (3.207) BS01 rna ? GO:0000049 ... P62653 18596689
    94 4v63:CK (3.207) BS01 rna ? GO:0003735 ... P62654 18596689
    95 4v63:CK (3.207) BS02 rna ? GO:0003735 ... P62654 18596689
    96 4v63:CL (3.207) BS01 rna ? GO:0000049 ... P61941 18596689
    97 4v63:CM (3.207) BS01 rna ? GO:0000049 ... P62655 18596689
    98 4v63:CM (3.207) BS02 rna ? GO:0000049 ... P62655 18596689
    99 4v63:CN (3.207) BS01 rna ? GO:0003735 ... P62656 18596689
    100 4v63:CN (3.207) BS02 ZN ? GO:0003735 ... P62656 18596689
    101 4v63:CO (3.207) BS01 rna ? GO:0003735 ... P62657 18596689
    102 4v63:CO (3.207) BS02 rna ? GO:0003735 ... P62657 18596689
    103 4v63:CP (3.207) BS01 rna ? GO:0003735 ... P62238 18596689
    104 4v63:CQ (3.207) BS01 rna ? GO:0003735 ... P62658 18596689
    105 4v63:CR (3.207) BS01 rna ? GO:0003735 ... P62659 18596689
    106 4v63:CS (3.207) BS01 rna ? GO:0000028 ... P62660 18596689
    107 4v63:CT (3.207) BS01 rna ? GO:0003723 ... P62661 18596689
    108 4v63:CX (3.207) BS01 rna ? GO:0003747 ... Q72HB8 18596689
    109 4v63:CX (3.207) BS02 rna ? GO:0003747 ... Q72HB8 18596689
    110 4v63:CX (3.207) BS03 rna ? GO:0003747 ... Q72HB8 18596689
    111 4v63:CX (3.207) BS04 rna ? GO:0003747 ... Q72HB8 18596689
    112 4v63:CX (3.207) BS05 MG ? GO:0003747 ... Q72HB8 18596689
    113 4v63:D0 (3.207) BS01 rna ? GO:0003735 ... Q72HR3 18596689
    114 4v63:D0 (3.207) BS02 rna ? GO:0003735 ... Q72HR3 18596689
    115 4v63:D1 (3.207) BS01 rna ? GO:0003735 ... Q72G84 18596689
    116 4v63:D2 (3.207) BS01 rna ? GO:0003735 ... Q72I12 18596689
    117 4v63:D2 (3.207) BS02 MG ? GO:0003735 ... Q72I12 18596689
    118 4v63:D3 (3.207) BS01 rna ? GO:0003735 ... Q72I22 18596689
    119 4v63:D5 (3.207) BS01 rna ? GO:0003735 ... P62652 18596689
    120 4v63:D6 (3.207) BS01 rna ? GO:0003735 ... Q72GW3 18596689
    121 4v63:D7 (3.207) BS01 rna ? GO:0003735 ... P80340 18596689
    122 4v63:D7 (3.207) BS02 MG ? GO:0003735 ... P80340 18596689
    123 4v63:D8 (3.207) BS01 rna ? GO:0003735 ... Q72L77 18596689
    124 4v63:DD (3.207) BS01 rna ? GO:0002181 ... Q72I07 18596689
    125 4v63:DD (3.207) BS02 MG ? GO:0002181 ... Q72I07 18596689
    126 4v63:DE (3.207) BS01 rna ? GO:0003735 ... Q72I04 18596689
    127 4v63:DF (3.207) BS01 rna ? GO:0003735 ... Q72I05 18596689
    128 4v63:DG (3.207) BS01 rna ? GO:0000049 ... Q72I16 18596689
    129 4v63:DG (3.207) BS02 rna ? GO:0000049 ... Q72I16 18596689
    130 4v63:DG (3.207) BS03 rna ? GO:0000049 ... Q72I16 18596689
    131 4v63:DG (3.207) BS04 MG ? GO:0000049 ... Q72I16 18596689
    132 4v63:DH (3.207) BS01 rna ? GO:0002181 ... Q72I19 18596689
    133 4v63:DI (3.207) BS01 rna ? GO:0003735 ... Q72GV5 18596689
    134 4v63:DI (3.207) BS02 rna ? GO:0003735 ... Q72GV5 18596689
    135 4v63:DN (3.207) BS01 rna ? GO:0003729 ... Q72IN1 18596689
    136 4v63:DO (3.207) BS01 rna ? GO:0003735 ... Q72I14 18596689
    137 4v63:DO (3.207) BS02 rna ? GO:0003735 ... Q72I14 18596689
    138 4v63:DO (3.207) BS03 MG ? GO:0003735 ... Q72I14 18596689
    139 4v63:DP (3.207) BS01 rna ? GO:0003735 ... Q72I23 18596689
    140 4v63:DQ (3.207) BS01 rna ? GO:0000049 ... Q72I11 18596689
    141 4v63:DQ (3.207) BS02 rna ? GO:0000049 ... Q72I11 18596689
    142 4v63:DR (3.207) BS01 rna ? GO:0003735 ... Q72I33 18596689
    143 4v63:DS (3.207) BS01 rna ? GO:0003735 ... Q72I20 18596689
    144 4v63:DS (3.207) BS02 rna ? GO:0003735 ... Q72I20 18596689
    145 4v63:DT (3.207) BS01 rna ? GO:0003735 ... Q72JU9 18596689
    146 4v63:DT (3.207) BS02 rna ? GO:0003735 ... Q72JU9 18596689
    147 4v63:DU (3.207) BS01 rna ? GO:0000027 ... Q72L76 18596689
    148 4v63:DV (3.207) BS01 rna ? GO:0003723 ... Q72HR2 18596689
    149 4v63:DW (3.207) BS01 rna ? GO:0003735 ... Q72I09 18596689
    150 4v63:DX (3.207) BS01 rna ? GO:0000027 ... Q72I06 18596689
    151 4v63:DY (3.207) BS01 rna ? GO:0003723 ... Q72I15 18596689
    152 4v63:DZ (3.207) BS01 rna ? GO:0003723 ... Q72IA7 18596689
    153 4v63:DZ (3.207) BS02 rna ? GO:0003723 ... Q72IA7 18596689
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023)(download the PDF file).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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