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BioLiP
Download all results in tab-seperated text for 36 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1 4v49:AB (8.7) BS01 rna N/A GO:0003735 ... N/A 12853578
    2 4v49:AC (8.7) BS01 rna N/A GO:0003676 ... N/A 12853578
    3 4v49:AD (8.7) BS01 rna N/A GO:0003723 ... N/A 12853578
    4 4v49:AE (8.7) BS01 rna N/A GO:0003723 ... N/A 12853578
    5 4v49:AF (8.7) BS01 rna N/A GO:0003735 ... N/A 12853578
    6 4v49:AG (8.7) BS01 rna N/A GO:0003723 ... N/A 12853578
    7 4v49:AH (8.7) BS01 rna N/A GO:0003735 ... N/A 12853578
    8 4v49:AI (8.7) BS01 rna N/A GO:0003735 ... N/A 12853578
    9 4v49:AJ (8.7) BS01 rna N/A GO:0003723 ... N/A 12853578
    10 4v49:AK (8.7) BS01 rna N/A GO:0003735 ... N/A 12853578
    11 4v49:AL (8.7) BS01 rna N/A GO:0003735 ... N/A 12853578
    12 4v49:AM (8.7) BS01 rna N/A GO:0003676 ... N/A 12853578
    13 4v49:AM (8.7) BS02 rna N/A GO:0003676 ... N/A 12853578
    14 4v49:AM (8.7) BS03 rna N/A GO:0003676 ... N/A 12853578
    15 4v49:AN (8.7) BS01 rna N/A GO:0003735 ... N/A 12853578
    16 4v49:AO (8.7) BS01 rna N/A GO:0003735 ... N/A 12853578
    17 4v49:AP (8.7) BS01 rna N/A GO:0003735 ... N/A 12853578
    18 4v49:AQ (8.7) BS01 rna N/A GO:0003735 ... N/A 12853578
    19 4v49:AQ (8.7) BS02 rna N/A GO:0003735 ... N/A 12853578
    20 4v49:AR (8.7) BS01 rna N/A GO:0003735 ... N/A 12853578
    21 4v49:AS (8.7) BS01 rna N/A GO:0003723 ... N/A 12853578
    22 4v49:AT (8.7) BS01 rna N/A GO:0003723 ... N/A 12853578
    23 4v49:B1 (8.7) BS01 rna N/A GO:0003735 ... N/A 12853578
    24 4v49:B5 (8.7) BS01 rna N/A GO:0003723 ... N/A 12853578
    25 4v49:BA (8.7) BS01 rna N/A GO:0003723 ... N/A 12853578
    26 4v49:BB (8.7) BS01 rna N/A GO:0003735 ... N/A 12853578
    27 4v49:BC (8.7) BS01 rna N/A GO:0003735 ... N/A 12853578
    28 4v49:BD (8.7) BS01 rna N/A GO:0003735 ... N/A 12853578
    29 4v49:BG (8.7) BS01 rna N/A GO:0003735 ... N/A 12853578
    30 4v49:BI (8.7) BS01 rna N/A GO:0003735 ... N/A 12853578
    31 4v49:BJ (8.7) BS01 rna N/A GO:0003735 ... N/A 12853578
    32 4v49:BL (8.7) BS01 rna N/A GO:0003735 ... N/A 12853578
    33 4v49:BO (8.7) BS01 rna N/A GO:0003735 ... N/A 12853578
    34 4v49:BQ (8.7) BS01 rna N/A GO:0003735 ... N/A 12853578
    35 4v49:BX (8.7) BS01 rna N/A GO:0003735 ... N/A 12853578
    36 4v49:BZ (8.7) BS01 rna N/A GO:0003735 ... N/A 12853578
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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