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BioLiP
Download all results in tab-seperated text for 49 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1 4lmx:A (1.8) BS01 PEB ? GO:0030089 ... U5TBJ3 24979784
    2 4lmx:A (1.8) BS02 DBV ? GO:0030089 ... U5TBJ3 24979784
    3 4lmx:A (1.8) BS03 PEB ? GO:0030089 ... U5TBJ3 24979784
    4 4lmx:A (1.8) BS04 PEB ? GO:0030089 ... U5TBJ3 24979784
    5 4lmx:A (1.8) BS05 PEB ? GO:0030089 ... U5TBJ3 24979784
    6 4lmx:B (1.8) BS01 DBV ? GO:0009507 ... U5T8W0 24979784
    7 4lmx:B (1.8) BS02 PEB ? GO:0009507 ... U5T8W0 24979784
    8 4lmx:B (1.8) BS03 PEB ? GO:0009507 ... U5T8W0 24979784
    9 4lmx:C (1.8) BS01 PEB ? GO:0030089 ... U5TBU5 24979784
    10 4lmx:C (1.8) BS02 PEB ? GO:0030089 ... U5TBU5 24979784
    11 4lmx:C (1.8) BS03 DBV ? GO:0030089 ... U5TBU5 24979784
    12 4lmx:C (1.8) BS04 PEB ? GO:0030089 ... U5TBU5 24979784
    13 4lmx:C (1.8) BS05 PEB ? GO:0030089 ... U5TBU5 24979784
    14 4lmx:D (1.8) BS01 DBV ? GO:0009507 ... U5T8W0 24979784
    15 4lmx:D (1.8) BS02 PEB ? GO:0009507 ... U5T8W0 24979784
    16 4lmx:D (1.8) BS03 PEB ? GO:0009507 ... U5T8W0 24979784
    17 4lmx:E (1.8) BS01 PEB ? GO:0030089 ... U5TBJ3 24979784
    18 4lmx:E (1.8) BS02 DBV ? GO:0030089 ... U5TBJ3 24979784
    19 4lmx:E (1.8) BS03 PEB ? GO:0030089 ... U5TBJ3 24979784
    20 4lmx:E (1.8) BS04 PEB ? GO:0030089 ... U5TBJ3 24979784
    21 4lmx:E (1.8) BS05 PEB ? GO:0030089 ... U5TBJ3 24979784
    22 4lmx:F (1.8) BS01 DBV ? GO:0009507 ... U5T8W0 24979784
    23 4lmx:F (1.8) BS02 PEB ? GO:0009507 ... U5T8W0 24979784
    24 4lmx:F (1.8) BS03 PEB ? GO:0009507 ... U5T8W0 24979784
    25 4lmx:G (1.8) BS01 PEB ? GO:0030089 ... U5TBJ3 24979784
    26 4lmx:G (1.8) BS02 PEB ? GO:0030089 ... U5TBJ3 24979784
    27 4lmx:G (1.8) BS03 DBV ? GO:0030089 ... U5TBJ3 24979784
    28 4lmx:G (1.8) BS04 PEB ? GO:0030089 ... U5TBJ3 24979784
    29 4lmx:G (1.8) BS05 PEB ? GO:0030089 ... U5TBJ3 24979784
    30 4lmx:H (1.8) BS01 PEB ? GO:0009507 ... U5T8W0 24979784
    31 4lmx:H (1.8) BS02 DBV ? GO:0009507 ... U5T8W0 24979784
    32 4lmx:H (1.8) BS03 PEB ? GO:0009507 ... U5T8W0 24979784
    33 4lmx:H (1.8) BS04 PEB ? GO:0009507 ... U5T8W0 24979784
    34 4lmx:I (1.8) BS01 PEB ? GO:0030089 ... U5TBJ3 24979784
    35 4lmx:I (1.8) BS02 DBV ? GO:0030089 ... U5TBJ3 24979784
    36 4lmx:I (1.8) BS03 PEB ? GO:0030089 ... U5TBJ3 24979784
    37 4lmx:I (1.8) BS04 PEB ? GO:0030089 ... U5TBJ3 24979784
    38 4lmx:I (1.8) BS05 PEB ? GO:0030089 ... U5TBJ3 24979784
    39 4lmx:J (1.8) BS01 DBV ? GO:0009507 ... U5T8W0 24979784
    40 4lmx:J (1.8) BS02 PEB ? GO:0009507 ... U5T8W0 24979784
    41 4lmx:J (1.8) BS03 PEB ? GO:0009507 ... U5T8W0 24979784
    42 4lmx:K (1.8) BS01 PEB ? GO:0030089 ... U5TBJ3 24979784
    43 4lmx:K (1.8) BS02 PEB ? GO:0030089 ... U5TBJ3 24979784
    44 4lmx:K (1.8) BS03 DBV ? GO:0030089 ... U5TBJ3 24979784
    45 4lmx:K (1.8) BS04 PEB ? GO:0030089 ... U5TBJ3 24979784
    46 4lmx:K (1.8) BS05 PEB ? GO:0030089 ... U5TBJ3 24979784
    47 4lmx:L (1.8) BS01 DBV ? GO:0009507 ... U5T8W0 24979784
    48 4lmx:L (1.8) BS02 PEB ? GO:0009507 ... U5T8W0 24979784
    49 4lmx:L (1.8) BS03 PEB ? GO:0009507 ... U5T8W0 24979784
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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