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BioLiP
Download all results in tab-seperated text for 35 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.
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    # PDB
    (Resolution Å)
    Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1 3jam:A (3.46) BS01 rna ? GO:0000028 ... Q6CN12 26212456
    2 3jam:B (3.46) BS01 rna ? GO:0003735 ... Q6CWD0 26212456
    3 3jam:C (3.46) BS01 rna ? GO:0003723 ... Q6CKL3 26212456
    4 3jam:D (3.46) BS01 rna ? GO:0003723 ... Q6CRK7 26212456
    5 3jam:E (3.46) BS01 rna ? GO:0003723 ... Q6CWJ2 26212456
    6 3jam:F (3.46) BS01 rna ? GO:0000028 ... Q6CRA3 26212456
    7 3jam:G (3.46) BS01 rna ? GO:0003735 ... Q6CM04 26212456
    8 3jam:H (3.46) BS01 rna ? GO:0003735 ... Q6CTD6 26212456
    9 3jam:I (3.46) BS01 rna ? GO:0000462 ... Q6CMG3 26212456
    10 3jam:J (3.46) BS01 rna ? GO:0003723 ... Q6CM18 26212456
    11 3jam:K (3.46) BS01 rna ? GO:0003723 ... Q6CVZ5 26212456
    12 3jam:L (3.46) BS01 rna ? GO:0003735 ... Q6CX80 26212456
    13 3jam:M (3.46) BS01 rna ? GO:0003735 ... Q6CLU4 26212456
    14 3jam:N (3.46) BS01 rna ? GO:0003735 ... Q6CJK0 26212456
    15 3jam:O (3.46) BS01 rna ? GO:0000028 ... P27069 26212456
    16 3jam:P (3.46) BS01 rna ? GO:0000028 ... Q6CKV4 26212456
    17 3jam:Q (3.46) BS01 rna ? GO:0000462 ... Q875N2 26212456
    18 3jam:R (3.46) BS01 rna ? GO:0003735 ... Q6CWU3 26212456
    19 3jam:S (3.46) BS01 rna ? GO:0003676 ... Q6CWT9 26212456
    20 3jam:T (3.46) BS01 rna ? GO:0000028 ... Q6CXM0 26212456
    21 3jam:U (3.46) BS01 rna ? GO:0003735 ... Q6CIM1 26212456
    22 3jam:W (3.46) BS01 rna ? GO:0003735 ... Q6CW21 26212456
    23 3jam:X (3.46) BS01 rna ? GO:0003735 ... F2Z602 26212456
    24 3jam:Y (3.46) BS01 rna ? GO:0003735 ... Q6CU44 26212456
    25 3jam:Z (3.46) BS01 rna ? GO:0003735 ... Q6CW78 26212456
    26 3jam:a (3.46) BS01 rna ? GO:0003729 ... Q6CS01 26212456
    27 3jam:a (3.46) BS02 ZN ? GO:0003729 ... Q6CS01 26212456
    28 3jam:b (3.46) BS01 rna ? GO:0000028 ... Q6CNL2 26212456
    29 3jam:c (3.46) BS01 rna ? GO:0000028 ... P33285 26212456
    30 3jam:d (3.46) BS01 rna ? GO:0003735 ... Q6CPG3 26212456
    31 3jam:e (3.46) BS01 rna ? GO:0003735 ... Q6CUH5 26212456
    32 3jam:f (3.46) BS01 rna ? GO:0003735 ... P69061 26212456
    33 3jam:g (3.46) BS01 rna ? GO:0001934 ... Q6CNI7 26212456
    34 3jam:i (3.46) BS01 rna ? GO:0001677 ... P38912 26212456
    35 3jam:j (3.46) BS01 rna ? GO:0001731 ... P32911 26212456

    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023)(download the PDF file).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
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