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BioLiP
Download all results in tab-seperated text for 903398 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    903201 9iuk:A (3.38) BS01 A1L26 N/A N/A Q5ANA3 39242571
    903202 9iul:A (3.3) BS01 A1L26 N/A N/A Q5ANA3 39242571
    903203 9iul:A (3.3) BS02 TPF N/A N/A Q5ANA3 39242571
    903204 9ium:A (3.08) BS01 A1L26 N/A N/A Q5ANA3 39242571
    903205 9ium:A (3.08) BS02 A1L27 N/A N/A Q5ANA3 39242571
    903206 9iuy:A (1.51) BS01 MG N/A N/A P09528 N/A
    903207 9iuy:B (1.51) BS01 MG N/A N/A P09528 N/A
    903208 9iuy:C (1.51) BS01 MG N/A N/A P09528 N/A
    903209 9iuy:D (1.51) BS01 MG N/A N/A P09528 N/A
    903210 9iuy:E (1.51) BS01 MG N/A N/A P09528 N/A
    903211 9iuy:F (1.51) BS01 MG N/A N/A P09528 N/A
    903212 9iuy:G (1.51) BS01 MG N/A N/A P09528 N/A
    903213 9iuy:H (1.51) BS01 MG N/A N/A P09528 N/A
    903214 9iuy:I (1.51) BS01 MG N/A N/A P09528 N/A
    903215 9iuy:J (1.51) BS01 MG N/A N/A P09528 N/A
    903216 9iuy:K (1.51) BS01 MG N/A N/A P09528 N/A
    903217 9iuy:L (1.51) BS01 MG N/A N/A P09528 N/A
    903218 9iuy:M (1.51) BS01 MG N/A N/A P09528 N/A
    903219 9iuy:N (1.51) BS01 MG N/A N/A P09528 N/A
    903220 9iuy:O (1.51) BS01 MG N/A N/A P09528 N/A
    903221 9iuy:P (1.51) BS01 MG N/A N/A P09528 N/A
    903222 9iuy:Q (1.51) BS01 MG N/A N/A P09528 N/A
    903223 9iuy:R (1.51) BS01 MG N/A N/A P09528 N/A
    903224 9iuy:S (1.51) BS01 MG N/A N/A P09528 N/A
    903225 9iuy:T (1.51) BS01 MG N/A N/A P09528 N/A
    903226 9iuy:U (1.51) BS01 MG N/A N/A P09528 N/A
    903227 9iuy:V (1.51) BS01 MG N/A N/A P09528 N/A
    903228 9iuy:W (1.51) BS01 MG N/A N/A P09528 N/A
    903229 9iuy:X (1.51) BS01 MG N/A N/A P09528 N/A
    903230 9iy0:H (1.97) BS01 MG N/A N/A N/A N/A
    903231 9iye:A (2.39) BS01 PAE N/A N/A A4W515 N/A
    903232 9iye:B (2.39) BS01 PAE N/A N/A A4W515 N/A
    903233 9iye:C (2.39) BS01 PAE N/A N/A A4W515 N/A
    903234 9iye:D (2.39) BS01 PAE N/A N/A A4W515 N/A
    903235 9iye:E (2.39) BS01 PAE N/A N/A A4W515 N/A
    903236 9iye:F (2.39) BS01 PAE N/A N/A A4W515 N/A
    903237 9iyf:A (2.37) BS01 PAE N/A N/A A4W515 N/A
    903238 9iyf:B (2.37) BS01 PAE N/A N/A A4W515 N/A
    903239 9iyf:C (2.37) BS01 PAE N/A N/A A4W515 N/A
    903240 9iyf:D (2.37) BS01 PAE N/A N/A A4W515 N/A
    903241 9iyf:E (2.37) BS01 PAE N/A N/A A4W515 N/A
    903242 9iyf:F (2.37) BS01 PAE N/A N/A A4W515 N/A
    903243 9iyh:A (2.25) BS01 PAE N/A N/A A4W515 N/A
    903244 9iyh:B (2.25) BS01 PAE N/A N/A A4W515 N/A
    903245 9iyh:C (2.25) BS01 PAE N/A N/A A4W515 N/A
    903246 9iyh:D (2.25) BS01 PAE N/A N/A A4W515 N/A
    903247 9iyh:E (2.25) BS01 PAE N/A N/A A4W515 N/A
    903248 9iyh:F (2.25) BS01 PAE N/A N/A A4W515 N/A
    903249 9iyk:A (2.34) BS01 CU N/A N/A P00441 N/A
    903250 9iyk:A (2.34) BS02 ZN N/A N/A P00441 N/A
    903251 9iyk:B (2.34) BS01 CU N/A N/A P00441 N/A
    903252 9iyk:B (2.34) BS02 ZN N/A N/A P00441 N/A
    903253 9iyk:C (2.34) BS01 CU N/A N/A P00441 N/A
    903254 9iyk:C (2.34) BS02 ZN N/A N/A P00441 N/A
    903255 9iyk:D (2.34) BS01 CU N/A N/A P00441 N/A
    903256 9iyk:D (2.34) BS02 ZN N/A N/A P00441 N/A
    903257 9iyk:E (2.34) BS01 CU N/A N/A P00441 N/A
    903258 9iyk:E (2.34) BS02 ZN N/A N/A P00441 N/A
    903259 9iyk:F (2.34) BS01 CU N/A N/A P00441 N/A
    903260 9iyk:F (2.34) BS02 ZN N/A N/A P00441 N/A
    903261 9iyk:G (2.34) BS01 CU N/A N/A P00441 N/A
    903262 9iyk:G (2.34) BS02 ZN N/A N/A P00441 N/A
    903263 9iyk:H (2.34) BS01 CU N/A N/A P00441 N/A
    903264 9iyk:H (2.34) BS02 ZN N/A N/A P00441 N/A
    903265 9iyk:I (2.34) BS01 CU N/A N/A P00441 N/A
    903266 9iyk:I (2.34) BS02 ZN N/A N/A P00441 N/A
    903267 9iyk:J (2.34) BS01 CU N/A N/A P00441 N/A
    903268 9iyk:J (2.34) BS02 ZN N/A N/A P00441 N/A
    903269 9iyk:K (2.34) BS01 CU N/A N/A P00441 N/A
    903270 9iyk:K (2.34) BS02 ZN N/A N/A P00441 N/A
    903271 9iyk:L (2.34) BS01 CU N/A N/A P00441 N/A
    903272 9iyk:L (2.34) BS02 ZN N/A N/A P00441 N/A
    903273 9j0u:A (2.58) BS01 PLP N/A N/A K0NPP0 N/A
    903274 9j0v:A (1.79) BS01 PLP N/A N/A K0NPP0 N/A
    903275 9j26:A (1.45) BS01 peptide N/A N/A N/A N/A
    903276 9j26:A (1.45) BS02 peptide N/A N/A N/A N/A
    903277 9j26:E (1.45) BS01 peptide N/A N/A N/A N/A
    903278 9j26:F (1.45) BS01 peptide N/A N/A N/A N/A
    903279 9j26:F (1.45) BS02 peptide N/A N/A N/A N/A
    903280 9j26:F (1.45) BS03 peptide N/A N/A N/A N/A
    903281 9j4i:A (1.96) BS01 FRU N/A N/A F8QV43 39098696
    903282 9j4i:A (1.96) BS02 FRU N/A N/A F8QV43 39098696
    903283 9j4i:A (1.96) BS03 FRU N/A N/A F8QV43 39098696
    903284 9j4i:A (1.96) BS04 FRU N/A N/A F8QV43 39098696
    903285 9j4i:A (1.96) BS05 FRU N/A N/A F8QV43 39098696
    903286 9j4i:B (1.96) BS01 FRU N/A N/A F8QV43 39098696
    903287 9j4i:B (1.96) BS02 FRU N/A N/A F8QV43 39098696
    903288 9j4i:B (1.96) BS03 FRU N/A N/A F8QV43 39098696
    903289 9j4i:B (1.96) BS04 GLC N/A N/A F8QV43 39098696
    903290 9j4i:B (1.96) BS05 FRU N/A N/A F8QV43 39098696
    903291 9j4i:B (1.96) BS06 FRU N/A N/A F8QV43 39098696
    903292 9j4i:B (1.96) BS07 FRU N/A N/A F8QV43 39098696
    903293 9j4i:B (1.96) BS08 GLC N/A N/A F8QV43 39098696
    903294 9j4i:C (1.96) BS01 FRU N/A N/A F8QV43 39098696
    903295 9j4i:C (1.96) BS02 FRU N/A N/A F8QV43 39098696
    903296 9j4i:C (1.96) BS03 FRU N/A N/A F8QV43 39098696
    903297 9j4i:C (1.96) BS04 GLC N/A N/A F8QV43 39098696
    903298 9j4i:C (1.96) BS05 FRU N/A N/A F8QV43 39098696
    903299 9j4j:A (2.803) BS01 FRU N/A N/A F8QV43 39098696
    903300 9j4j:A (2.803) BS02 FRU N/A N/A F8QV43 39098696
    903301 9j4j:A (2.803) BS03 FRU N/A N/A F8QV43 39098696
    903302 9j4j:A (2.803) BS04 FRU N/A N/A F8QV43 39098696
    903303 9j4j:A (2.803) BS05 FRU N/A N/A F8QV43 39098696
    903304 9j4j:B (2.803) BS01 GLC N/A N/A F8QV43 39098696
    903305 9j4j:B (2.803) BS02 FRU N/A N/A F8QV43 39098696
    903306 9j4j:B (2.803) BS03 FRU N/A N/A F8QV43 39098696
    903307 9j4j:B (2.803) BS04 FRU N/A N/A F8QV43 39098696
    903308 9j4j:B (2.803) BS05 FRU N/A N/A F8QV43 39098696
    903309 9j4j:B (2.803) BS06 FRU N/A N/A F8QV43 39098696
    903310 9j4j:C (2.803) BS01 FRU N/A N/A F8QV43 39098696
    903311 9j4j:C (2.803) BS02 FRU N/A N/A F8QV43 39098696
    903312 9j4k:A (2.201) BS01 FRU N/A N/A F8QV43 39098696
    903313 9j4k:A (2.201) BS02 GLC N/A N/A F8QV43 39098696
    903314 9j4k:A (2.201) BS03 FRU N/A N/A F8QV43 39098696
    903315 9j4k:A (2.201) BS04 FRU N/A N/A F8QV43 39098696
    903316 9j4k:A (2.201) BS05 FRU N/A N/A F8QV43 39098696
    903317 9j4k:B (2.201) BS01 FRU N/A N/A F8QV43 39098696
    903318 9j4k:B (2.201) BS02 GLC N/A N/A F8QV43 39098696
    903319 9j4k:B (2.201) BS03 FRU N/A N/A F8QV43 39098696
    903320 9j4k:B (2.201) BS04 FRU N/A N/A F8QV43 39098696
    903321 9j4k:C (2.201) BS01 FRU N/A N/A F8QV43 39098696
    903322 9j6i:B (2.3) BS01 H9X N/A N/A Q8VZS8 N/A
    903323 9j8e:A (2.65) BS01 BT5 N/A N/A P46363 39213703
    903324 9j8e:B (2.65) BS01 BT5 N/A N/A P46363 39213703
    903325 9j9a:A (1.75) BS01 BGC N/A N/A Q8GAX8 39276694
    903326 9j9a:A (1.75) BS02 BGC N/A N/A Q8GAX8 39276694
    903327 9j9c:A (3.1) BS01 U2F N/A N/A A0A8K1ZRH3 N/A
    903328 9j9c:A (3.1) BS02 T83 N/A N/A A0A8K1ZRH3 N/A
    903329 9j9c:B (3.1) BS01 U2F N/A N/A A0A8K1ZRH3 N/A
    903330 9j9c:B (3.1) BS02 T83 N/A N/A A0A8K1ZRH3 N/A
    903331 9j9c:C (3.1) BS01 U2F N/A N/A A0A8K1ZRH3 N/A
    903332 9j9c:C (3.1) BS02 T83 N/A N/A A0A8K1ZRH3 N/A
    903333 9j9c:D (3.1) BS01 U2F N/A N/A A0A8K1ZRH3 N/A
    903334 9j9c:D (3.1) BS02 T83 N/A N/A A0A8K1ZRH3 N/A
    903335 9j9c:E (3.1) BS01 U2F N/A N/A A0A8K1ZRH3 N/A
    903336 9j9c:F (3.1) BS01 U2F N/A N/A A0A8K1ZRH3 N/A
    903337 9j9c:F (3.1) BS02 T83 N/A N/A A0A8K1ZRH3 N/A
    903338 9j9c:G (3.1) BS01 U2F N/A N/A A0A8K1ZRH3 N/A
    903339 9j9k:A (3.15) BS01 T83 N/A N/A A0A8K1ZRH3 N/A
    903340 9j9k:A (3.15) BS02 U2F N/A N/A A0A8K1ZRH3 N/A
    903341 9j9k:B (3.15) BS01 T83 N/A N/A A0A8K1ZRH3 N/A
    903342 9j9k:B (3.15) BS02 U2F N/A N/A A0A8K1ZRH3 N/A
    903343 9ja1:A (2.98) BS01 rna N/A N/A P04050 N/A
    903344 9ja1:A (2.98) BS02 dna N/A N/A P04050 N/A
    903345 9ja1:A (2.98) BS03 dna N/A N/A P04050 N/A
    903346 9ja1:A (2.98) BS04 ZN N/A N/A P04050 N/A
    903347 9ja1:A (2.98) BS05 ZN N/A N/A P04050 N/A
    903348 9ja1:A (2.98) BS06 ATP N/A N/A P04050 N/A
    903349 9ja1:B (2.98) BS01 rna N/A N/A P08518 N/A
    903350 9ja1:B (2.98) BS02 dna N/A N/A P08518 N/A
    903351 9ja1:B (2.98) BS03 ZN N/A N/A P08518 N/A
    903352 9ja1:B (2.98) BS04 ATP N/A N/A P08518 N/A
    903353 9ja1:C (2.98) BS01 ZN N/A N/A P16370 N/A
    903354 9ja1:J (2.98) BS01 ZN N/A N/A P22139 N/A
    903355 9ja1:L (2.98) BS01 ZN N/A N/A P40422 N/A
    903356 9jd2:A (1.62) BS01 MTA N/A N/A Q9YAQ8 N/A
    903357 9jdw:A (2.5) BS01 ABA 2.1.4.1 GO:0005515 ... P50440 9915841
    903358 9jhv:A (1.65) BS01 MTA N/A N/A Q9YAQ8 N/A
    903359 9ldb:A (2.2) BS01 NAD 1.1.1.27 GO:0003824 ... P00339 1678537
    903360 9ldb:B (2.2) BS01 NAD 1.1.1.27 GO:0003824 ... P00339 1678537
    903361 9ldt:A (2.0) BS01 NAD 1.1.1.27 GO:0003824 ... P00339 1678537
    903362 9ldt:B (2.0) BS01 NAD 1.1.1.27 GO:0003824 ... P00339 1678537
    903363 9lpr:A (2.2) BS01 peptide 3.4.21.12 GO:0004252 ... P00778 1931963
    903364 9lyz:A (2.5) BS01 AMU 3.2.1.17 GO:0003796 ... P00698 514367
    903365 9mht:A (2.39) BS01 dna 2.1.1.37 GO:0003677 ... P05102 9783745
    903366 9mht:A (2.39) BS02 dna 2.1.1.37 GO:0003677 ... P05102 9783745
    903367 9mht:A (2.39) BS03 SAH 2.1.1.37 GO:0003677 ... P05102 9783745
    903368 9nse:A (2.24) BS01 ZN 1.14.13.39 GO:0004517 ... P29473 11051558
    903369 9nse:A (2.24) BS02 HEM 1.14.13.39 GO:0004517 ... P29473 11051558
    903370 9nse:A (2.24) BS03 H4B 1.14.13.39 GO:0004517 ... P29473 11051558
    903371 9nse:A (2.24) BS04 ISU 1.14.13.39 GO:0004517 ... P29473 11051558 MOAD: Ki=0.039uM
    903372 9nse:A (2.24) BS05 H4B 1.14.13.39 GO:0004517 ... P29473 11051558
    903373 9nse:B (2.24) BS01 ZN 1.14.13.39 GO:0004517 ... P29473 11051558
    903374 9nse:B (2.24) BS02 H4B 1.14.13.39 GO:0004517 ... P29473 11051558
    903375 9nse:B (2.24) BS03 HEM 1.14.13.39 GO:0004517 ... P29473 11051558
    903376 9nse:B (2.24) BS04 H4B 1.14.13.39 GO:0004517 ... P29473 11051558
    903377 9nse:B (2.24) BS05 ISU 1.14.13.39 GO:0004517 ... P29473 11051558 MOAD: Ki=0.039uM
    903378 9nse:B (2.24) BS06 ISU 1.14.13.39 GO:0004517 ... P29473 11051558 MOAD: Ki=0.039uM
    903379 9pcy:A (-1.00) BS01 CU ? GO:0005507 ... P00287 1920431
    903380 9rsa:B (1.8) BS01 ADU 4.6.1.18 GO:0003676 ... P61823 2340284
    903381 9rub:A (2.6) BS01 RUB 4.1.1.39 GO:0000287 ... P04718 1905726
    903382 9rub:B (2.6) BS01 RUB 4.1.1.39 GO:0000287 ... P04718 1905726
    903383 9rub:B (2.6) BS02 MG 4.1.1.39 GO:0000287 ... P04718 1905726
    903384 9xia:A (1.9) BS01 DFR 5.3.1.5 GO:0000287 ... P24300 2734296
    903385 9xia:A (1.9) BS02 MN 5.3.1.5 GO:0000287 ... P24300 2734296
    903386 9xia:A (1.9) BS03 MN 5.3.1.5 GO:0000287 ... P24300 2734296
    903387 9xim:A (2.4) BS01 XLS 5.3.1.5 GO:0000287 ... P12851 1610791
    903388 9xim:A (2.4) BS02 MN 5.3.1.5 GO:0000287 ... P12851 1610791
    903389 9xim:A (2.4) BS03 MN 5.3.1.5 GO:0000287 ... P12851 1610791
    903390 9xim:B (2.4) BS01 XLS 5.3.1.5 GO:0000287 ... P12851 1610791
    903391 9xim:B (2.4) BS02 MN 5.3.1.5 GO:0000287 ... P12851 1610791
    903392 9xim:B (2.4) BS03 MN 5.3.1.5 GO:0000287 ... P12851 1610791
    903393 9xim:C (2.4) BS01 XLS 5.3.1.5 GO:0000287 ... P12851 1610791
    903394 9xim:C (2.4) BS02 MN 5.3.1.5 GO:0000287 ... P12851 1610791
    903395 9xim:C (2.4) BS03 MN 5.3.1.5 GO:0000287 ... P12851 1610791
    903396 9xim:D (2.4) BS01 XLS 5.3.1.5 GO:0000287 ... P12851 1610791
    903397 9xim:D (2.4) BS02 MN 5.3.1.5 GO:0000287 ... P12851 1610791
    903398 9xim:D (2.4) BS03 MN 5.3.1.5 GO:0000287 ... P12851 1610791
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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