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●TM-score ●TM-align ●US-align ●MM-align ●RNA-align ●NW-align ●LS-align ●EDTSurf ●MVP ●MVP-Fit ●SPICKER ●HAAD ●PSSpred ●3DRobot ●MR-REX ●I-TASSER-MR ●SVMSEQ ●NeBcon ●ResPRE ●TripletRes ●DeepPotential ●WDL-RF ●ATPbind ●DockRMSD ●DeepMSA ●FASPR ●EM-Refiner ●GPU-I-TASSER

●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
Download all results in tab-seperated text for 903398 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    16001 1gt8:D (3.3) BS08 UAA 1.3.1.2 GO:0000166 ... Q28943 11796730
    16002 1gt9:1 (1.38) BS01 CA ? GO:0004252 ... Q8RR56 12057200
    16003 1gt9:2 (1.38) BS01 CA ? GO:0004252 ... Q8RR56 12057200
    16004 1gtb:A (2.6) BS01 PZQ 2.5.1.18 GO:0004364 ... P08515 7853399
    16005 1gte:A (1.65) BS01 SF4 1.3.1.2 GO:0000166 ... Q28943 11796730
    16006 1gte:A (1.65) BS02 SF4 1.3.1.2 GO:0000166 ... Q28943 11796730
    16007 1gte:A (1.65) BS03 SF4 1.3.1.2 GO:0000166 ... Q28943 11796730
    16008 1gte:A (1.65) BS04 SF4 1.3.1.2 GO:0000166 ... Q28943 11796730
    16009 1gte:A (1.65) BS05 FMN 1.3.1.2 GO:0000166 ... Q28943 11796730
    16010 1gte:A (1.65) BS06 FAD 1.3.1.2 GO:0000166 ... Q28943 11796730
    16011 1gte:A (1.65) BS07 IUR 1.3.1.2 GO:0000166 ... Q28943 11796730
    16012 1gte:B (1.65) BS01 SF4 1.3.1.2 GO:0000166 ... Q28943 11796730
    16013 1gte:B (1.65) BS02 SF4 1.3.1.2 GO:0000166 ... Q28943 11796730
    16014 1gte:B (1.65) BS03 SF4 1.3.1.2 GO:0000166 ... Q28943 11796730
    16015 1gte:B (1.65) BS04 SF4 1.3.1.2 GO:0000166 ... Q28943 11796730
    16016 1gte:B (1.65) BS05 FMN 1.3.1.2 GO:0000166 ... Q28943 11796730
    16017 1gte:B (1.65) BS06 FAD 1.3.1.2 GO:0000166 ... Q28943 11796730
    16018 1gte:B (1.65) BS07 IUR 1.3.1.2 GO:0000166 ... Q28943 11796730
    16019 1gte:C (1.65) BS01 SF4 1.3.1.2 GO:0000166 ... Q28943 11796730
    16020 1gte:C (1.65) BS02 SF4 1.3.1.2 GO:0000166 ... Q28943 11796730
    16021 1gte:C (1.65) BS03 SF4 1.3.1.2 GO:0000166 ... Q28943 11796730
    16022 1gte:C (1.65) BS04 SF4 1.3.1.2 GO:0000166 ... Q28943 11796730
    16023 1gte:C (1.65) BS05 FMN 1.3.1.2 GO:0000166 ... Q28943 11796730
    16024 1gte:C (1.65) BS06 FAD 1.3.1.2 GO:0000166 ... Q28943 11796730
    16025 1gte:C (1.65) BS07 IUR 1.3.1.2 GO:0000166 ... Q28943 11796730
    16026 1gte:D (1.65) BS01 SF4 1.3.1.2 GO:0000166 ... Q28943 11796730
    16027 1gte:D (1.65) BS02 SF4 1.3.1.2 GO:0000166 ... Q28943 11796730
    16028 1gte:D (1.65) BS03 SF4 1.3.1.2 GO:0000166 ... Q28943 11796730
    16029 1gte:D (1.65) BS04 SF4 1.3.1.2 GO:0000166 ... Q28943 11796730
    16030 1gte:D (1.65) BS05 FMN 1.3.1.2 GO:0000166 ... Q28943 11796730
    16031 1gte:D (1.65) BS06 FAD 1.3.1.2 GO:0000166 ... Q28943 11796730
    16032 1gte:D (1.65) BS07 IUR 1.3.1.2 GO:0000166 ... Q28943 11796730
    16033 1gtf:A (1.75) BS01 TRP ? GO:0003723 ... Q9X6J6 11914485
    16034 1gtf:A (1.75) BS02 TRP ? GO:0003723 ... Q9X6J6 11914485
    16035 1gtf:B (1.75) BS01 TRP ? GO:0003723 ... Q9X6J6 11914485
    16036 1gtf:B (1.75) BS02 TRP ? GO:0003723 ... Q9X6J6 11914485
    16037 1gtf:C (1.75) BS01 TRP ? GO:0003723 ... Q9X6J6 11914485
    16038 1gtf:C (1.75) BS02 TRP ? GO:0003723 ... Q9X6J6 11914485
    16039 1gtf:D (1.75) BS01 TRP ? GO:0003723 ... Q9X6J6 11914485
    16040 1gtf:D (1.75) BS02 TRP ? GO:0003723 ... Q9X6J6 11914485
    16041 1gtf:E (1.75) BS01 TRP ? GO:0003723 ... Q9X6J6 11914485
    16042 1gtf:E (1.75) BS02 TRP ? GO:0003723 ... Q9X6J6 11914485
    16043 1gtf:F (1.75) BS01 TRP ? GO:0003723 ... Q9X6J6 11914485
    16044 1gtf:F (1.75) BS02 TRP ? GO:0003723 ... Q9X6J6 11914485
    16045 1gtf:G (1.75) BS01 TRP ? GO:0003723 ... Q9X6J6 11914485
    16046 1gtf:G (1.75) BS02 TRP ? GO:0003723 ... Q9X6J6 11914485
    16047 1gtf:H (1.75) BS01 TRP ? GO:0003723 ... Q9X6J6 11914485
    16048 1gtf:H (1.75) BS02 TRP ? GO:0003723 ... Q9X6J6 11914485
    16049 1gtf:I (1.75) BS01 TRP ? GO:0003723 ... Q9X6J6 11914485
    16050 1gtf:I (1.75) BS02 TRP ? GO:0003723 ... Q9X6J6 11914485
    16051 1gtf:J (1.75) BS01 TRP ? GO:0003723 ... Q9X6J6 11914485
    16052 1gtf:J (1.75) BS02 TRP ? GO:0003723 ... Q9X6J6 11914485
    16053 1gtf:K (1.75) BS01 TRP ? GO:0003723 ... Q9X6J6 11914485
    16054 1gtf:K (1.75) BS02 TRP ? GO:0003723 ... Q9X6J6 11914485
    16055 1gtf:L (1.75) BS01 rna ? GO:0003723 ... Q9X6J6 11914485
    16056 1gtf:L (1.75) BS02 TRP ? GO:0003723 ... Q9X6J6 11914485
    16057 1gtf:L (1.75) BS03 TRP ? GO:0003723 ... Q9X6J6 11914485
    16058 1gtf:M (1.75) BS01 rna ? GO:0003723 ... Q9X6J6 11914485
    16059 1gtf:M (1.75) BS02 TRP ? GO:0003723 ... Q9X6J6 11914485
    16060 1gtf:M (1.75) BS03 TRP ? GO:0003723 ... Q9X6J6 11914485
    16061 1gtf:N (1.75) BS01 rna ? GO:0003723 ... Q9X6J6 11914485
    16062 1gtf:N (1.75) BS02 TRP ? GO:0003723 ... Q9X6J6 11914485
    16063 1gtf:N (1.75) BS03 TRP ? GO:0003723 ... Q9X6J6 11914485
    16064 1gtf:O (1.75) BS01 rna ? GO:0003723 ... Q9X6J6 11914485
    16065 1gtf:O (1.75) BS02 TRP ? GO:0003723 ... Q9X6J6 11914485
    16066 1gtf:O (1.75) BS03 TRP ? GO:0003723 ... Q9X6J6 11914485
    16067 1gtf:P (1.75) BS01 rna ? GO:0003723 ... Q9X6J6 11914485
    16068 1gtf:P (1.75) BS02 TRP ? GO:0003723 ... Q9X6J6 11914485
    16069 1gtf:P (1.75) BS03 TRP ? GO:0003723 ... Q9X6J6 11914485
    16070 1gtf:Q (1.75) BS01 rna ? GO:0003723 ... Q9X6J6 11914485
    16071 1gtf:Q (1.75) BS02 TRP ? GO:0003723 ... Q9X6J6 11914485
    16072 1gtf:Q (1.75) BS03 TRP ? GO:0003723 ... Q9X6J6 11914485
    16073 1gtf:R (1.75) BS01 rna ? GO:0003723 ... Q9X6J6 11914485
    16074 1gtf:R (1.75) BS02 TRP ? GO:0003723 ... Q9X6J6 11914485
    16075 1gtf:R (1.75) BS03 TRP ? GO:0003723 ... Q9X6J6 11914485
    16076 1gtf:S (1.75) BS01 rna ? GO:0003723 ... Q9X6J6 11914485
    16077 1gtf:S (1.75) BS02 TRP ? GO:0003723 ... Q9X6J6 11914485
    16078 1gtf:S (1.75) BS03 TRP ? GO:0003723 ... Q9X6J6 11914485
    16079 1gtf:T (1.75) BS01 rna ? GO:0003723 ... Q9X6J6 11914485
    16080 1gtf:T (1.75) BS02 TRP ? GO:0003723 ... Q9X6J6 11914485
    16081 1gtf:T (1.75) BS03 TRP ? GO:0003723 ... Q9X6J6 11914485
    16082 1gtf:U (1.75) BS01 rna ? GO:0003723 ... Q9X6J6 11914485
    16083 1gtf:U (1.75) BS02 TRP ? GO:0003723 ... Q9X6J6 11914485
    16084 1gtf:U (1.75) BS03 TRP ? GO:0003723 ... Q9X6J6 11914485
    16085 1gtf:V (1.75) BS01 rna ? GO:0003723 ... Q9X6J6 11914485
    16086 1gtf:V (1.75) BS02 TRP ? GO:0003723 ... Q9X6J6 11914485
    16087 1gtf:V (1.75) BS03 TRP ? GO:0003723 ... Q9X6J6 11914485
    16088 1gtg:1 (2.3) BS01 CA ? GO:0004252 ... Q8RR56 12057200
    16089 1gth:A (2.25) BS01 SF4 1.3.1.2 GO:0000166 ... Q28943 11796730
    16090 1gth:A (2.25) BS02 SF4 1.3.1.2 GO:0000166 ... Q28943 11796730
    16091 1gth:A (2.25) BS03 SF4 1.3.1.2 GO:0000166 ... Q28943 11796730
    16092 1gth:A (2.25) BS04 SF4 1.3.1.2 GO:0000166 ... Q28943 11796730
    16093 1gth:A (2.25) BS05 FMN 1.3.1.2 GO:0000166 ... Q28943 11796730
    16094 1gth:A (2.25) BS06 FAD 1.3.1.2 GO:0000166 ... Q28943 11796730
    16095 1gth:A (2.25) BS07 NDP 1.3.1.2 GO:0000166 ... Q28943 11796730
    16096 1gth:A (2.25) BS08 IDH 1.3.1.2 GO:0000166 ... Q28943 11796730
    16097 1gth:B (2.25) BS01 SF4 1.3.1.2 GO:0000166 ... Q28943 11796730
    16098 1gth:B (2.25) BS02 SF4 1.3.1.2 GO:0000166 ... Q28943 11796730
    16099 1gth:B (2.25) BS03 SF4 1.3.1.2 GO:0000166 ... Q28943 11796730
    16100 1gth:B (2.25) BS04 SF4 1.3.1.2 GO:0000166 ... Q28943 11796730
    16101 1gth:B (2.25) BS05 FMN 1.3.1.2 GO:0000166 ... Q28943 11796730
    16102 1gth:B (2.25) BS06 FAD 1.3.1.2 GO:0000166 ... Q28943 11796730
    16103 1gth:B (2.25) BS07 NDP 1.3.1.2 GO:0000166 ... Q28943 11796730
    16104 1gth:B (2.25) BS08 IDH 1.3.1.2 GO:0000166 ... Q28943 11796730
    16105 1gth:C (2.25) BS01 SF4 1.3.1.2 GO:0000166 ... Q28943 11796730
    16106 1gth:C (2.25) BS02 SF4 1.3.1.2 GO:0000166 ... Q28943 11796730
    16107 1gth:C (2.25) BS03 SF4 1.3.1.2 GO:0000166 ... Q28943 11796730
    16108 1gth:C (2.25) BS04 SF4 1.3.1.2 GO:0000166 ... Q28943 11796730
    16109 1gth:C (2.25) BS05 FMN 1.3.1.2 GO:0000166 ... Q28943 11796730
    16110 1gth:C (2.25) BS06 FAD 1.3.1.2 GO:0000166 ... Q28943 11796730
    16111 1gth:C (2.25) BS07 NDP 1.3.1.2 GO:0000166 ... Q28943 11796730
    16112 1gth:C (2.25) BS08 IUR 1.3.1.2 GO:0000166 ... Q28943 11796730
    16113 1gth:D (2.25) BS01 SF4 1.3.1.2 GO:0000166 ... Q28943 11796730
    16114 1gth:D (2.25) BS02 SF4 1.3.1.2 GO:0000166 ... Q28943 11796730
    16115 1gth:D (2.25) BS03 SF4 1.3.1.2 GO:0000166 ... Q28943 11796730
    16116 1gth:D (2.25) BS04 SF4 1.3.1.2 GO:0000166 ... Q28943 11796730
    16117 1gth:D (2.25) BS05 FMN 1.3.1.2 GO:0000166 ... Q28943 11796730
    16118 1gth:D (2.25) BS06 FAD 1.3.1.2 GO:0000166 ... Q28943 11796730
    16119 1gth:D (2.25) BS07 NDP 1.3.1.2 GO:0000166 ... Q28943 11796730
    16120 1gth:D (2.25) BS08 URA 1.3.1.2 GO:0000166 ... Q28943 11796730
    16121 1gti:A (3.0) BS01 GTB 2.5.1.18 GO:0000302 ... P19157 9446594
    16122 1gti:B (3.0) BS01 GTB 2.5.1.18 GO:0000302 ... P19157 9446594
    16123 1gti:C (3.0) BS01 GTB 2.5.1.18 GO:0000302 ... P19157 9446594
    16124 1gti:D (3.0) BS01 GTB 2.5.1.18 GO:0000302 ... P19157 9446594
    16125 1gti:E (3.0) BS01 GTB 2.5.1.18 GO:0000302 ... P19157 9446594
    16126 1gti:F (3.0) BS01 GTB 2.5.1.18 GO:0000302 ... P19157 9446594
    16127 1gtj:1 (1.75) BS01 peptide ? GO:0004252 ... Q8RR56 12057200
    16128 1gtj:1 (1.75) BS02 CA ? GO:0004252 ... Q8RR56 12057200
    16129 1gtj:2 (1.75) BS01 peptide ? GO:0004252 ... Q8RR56 12057200
    16130 1gtj:2 (1.75) BS02 CA ? GO:0004252 ... Q8RR56 12057200
    16131 1gtk:A (1.66) BS01 DPM 2.5.1.61 GO:0004418 ... P06983 12555854
    16132 1gtl:1 (2.8) BS01 peptide ? GO:0004252 ... Q8RR56 12057200
    16133 1gtl:1 (2.8) BS02 CA ? GO:0004252 ... Q8RR56 12057200
    16134 1gtl:2 (2.8) BS01 peptide ? GO:0004252 ... Q8RR56 12057200
    16135 1gtl:2 (2.8) BS02 CA ? GO:0004252 ... Q8RR56 12057200
    16136 1gtn:A (2.5) BS01 TRP ? GO:0003723 ... Q9X6J6 11914485
    16137 1gtn:A (2.5) BS02 TRP ? GO:0003723 ... Q9X6J6 11914485
    16138 1gtn:A (2.5) BS03 TRP ? GO:0003723 ... Q9X6J6 11914485
    16139 1gtn:B (2.5) BS01 TRP ? GO:0003723 ... Q9X6J6 11914485
    16140 1gtn:B (2.5) BS02 TRP ? GO:0003723 ... Q9X6J6 11914485
    16141 1gtn:C (2.5) BS01 TRP ? GO:0003723 ... Q9X6J6 11914485
    16142 1gtn:C (2.5) BS02 TRP ? GO:0003723 ... Q9X6J6 11914485
    16143 1gtn:D (2.5) BS01 TRP ? GO:0003723 ... Q9X6J6 11914485
    16144 1gtn:D (2.5) BS02 TRP ? GO:0003723 ... Q9X6J6 11914485
    16145 1gtn:E (2.5) BS01 TRP ? GO:0003723 ... Q9X6J6 11914485
    16146 1gtn:E (2.5) BS02 TRP ? GO:0003723 ... Q9X6J6 11914485
    16147 1gtn:F (2.5) BS01 TRP ? GO:0003723 ... Q9X6J6 11914485
    16148 1gtn:F (2.5) BS02 TRP ? GO:0003723 ... Q9X6J6 11914485
    16149 1gtn:G (2.5) BS01 TRP ? GO:0003723 ... Q9X6J6 11914485
    16150 1gtn:G (2.5) BS02 TRP ? GO:0003723 ... Q9X6J6 11914485
    16151 1gtn:H (2.5) BS01 TRP ? GO:0003723 ... Q9X6J6 11914485
    16152 1gtn:H (2.5) BS02 TRP ? GO:0003723 ... Q9X6J6 11914485
    16153 1gtn:I (2.5) BS01 TRP ? GO:0003723 ... Q9X6J6 11914485
    16154 1gtn:I (2.5) BS02 TRP ? GO:0003723 ... Q9X6J6 11914485
    16155 1gtn:J (2.5) BS01 TRP ? GO:0003723 ... Q9X6J6 11914485
    16156 1gtn:J (2.5) BS02 TRP ? GO:0003723 ... Q9X6J6 11914485
    16157 1gtn:K (2.5) BS01 TRP ? GO:0003723 ... Q9X6J6 11914485
    16158 1gtn:K (2.5) BS02 TRP ? GO:0003723 ... Q9X6J6 11914485
    16159 1gtn:L (2.5) BS01 rna ? GO:0003723 ... Q9X6J6 11914485
    16160 1gtn:L (2.5) BS02 TRP ? GO:0003723 ... Q9X6J6 11914485
    16161 1gtn:L (2.5) BS03 TRP ? GO:0003723 ... Q9X6J6 11914485
    16162 1gtn:M (2.5) BS01 rna ? GO:0003723 ... Q9X6J6 11914485
    16163 1gtn:M (2.5) BS02 TRP ? GO:0003723 ... Q9X6J6 11914485
    16164 1gtn:M (2.5) BS03 TRP ? GO:0003723 ... Q9X6J6 11914485
    16165 1gtn:N (2.5) BS01 rna ? GO:0003723 ... Q9X6J6 11914485
    16166 1gtn:N (2.5) BS02 TRP ? GO:0003723 ... Q9X6J6 11914485
    16167 1gtn:N (2.5) BS03 TRP ? GO:0003723 ... Q9X6J6 11914485
    16168 1gtn:O (2.5) BS01 rna ? GO:0003723 ... Q9X6J6 11914485
    16169 1gtn:O (2.5) BS02 TRP ? GO:0003723 ... Q9X6J6 11914485
    16170 1gtn:O (2.5) BS03 TRP ? GO:0003723 ... Q9X6J6 11914485
    16171 1gtn:P (2.5) BS01 rna ? GO:0003723 ... Q9X6J6 11914485
    16172 1gtn:P (2.5) BS02 TRP ? GO:0003723 ... Q9X6J6 11914485
    16173 1gtn:P (2.5) BS03 TRP ? GO:0003723 ... Q9X6J6 11914485
    16174 1gtn:Q (2.5) BS01 rna ? GO:0003723 ... Q9X6J6 11914485
    16175 1gtn:Q (2.5) BS02 TRP ? GO:0003723 ... Q9X6J6 11914485
    16176 1gtn:Q (2.5) BS03 TRP ? GO:0003723 ... Q9X6J6 11914485
    16177 1gtn:R (2.5) BS01 rna ? GO:0003723 ... Q9X6J6 11914485
    16178 1gtn:R (2.5) BS02 TRP ? GO:0003723 ... Q9X6J6 11914485
    16179 1gtn:R (2.5) BS03 TRP ? GO:0003723 ... Q9X6J6 11914485
    16180 1gtn:S (2.5) BS01 rna ? GO:0003723 ... Q9X6J6 11914485
    16181 1gtn:S (2.5) BS02 TRP ? GO:0003723 ... Q9X6J6 11914485
    16182 1gtn:S (2.5) BS03 TRP ? GO:0003723 ... Q9X6J6 11914485
    16183 1gtn:T (2.5) BS01 rna ? GO:0003723 ... Q9X6J6 11914485
    16184 1gtn:T (2.5) BS02 TRP ? GO:0003723 ... Q9X6J6 11914485
    16185 1gtn:T (2.5) BS03 TRP ? GO:0003723 ... Q9X6J6 11914485
    16186 1gtn:U (2.5) BS01 rna ? GO:0003723 ... Q9X6J6 11914485
    16187 1gtn:U (2.5) BS02 TRP ? GO:0003723 ... Q9X6J6 11914485
    16188 1gtn:U (2.5) BS03 TRP ? GO:0003723 ... Q9X6J6 11914485
    16189 1gtn:V (2.5) BS01 rna ? GO:0003723 ... Q9X6J6 11914485
    16190 1gtn:V (2.5) BS02 TRP ? GO:0003723 ... Q9X6J6 11914485
    16191 1gtn:V (2.5) BS03 TRP ? GO:0003723 ... Q9X6J6 11914485
    16192 1gtq:A (2.3) BS01 ZN 4.2.3.12 GO:0003874 ... P27213 8137809
    16193 1gtq:B (2.3) BS01 ZN 4.2.3.12 GO:0003874 ... P27213 8137809
    16194 1gtr:A (2.5) BS01 rna 6.1.1.18 GO:0000166 ... P00962 1857417
    16195 1gtr:A (2.5) BS02 ATP 6.1.1.18 GO:0000166 ... P00962 1857417
    16196 1gts:A (2.8) BS01 rna 6.1.1.18 GO:0000166 ... P00962 8364025
    16197 1gts:A (2.8) BS02 AMP 6.1.1.18 GO:0000166 ... P00962 8364025
    16198 1gtt:A (1.7) BS01 CA 4.1.1.68
    5.3.3.10    		 GO:0003824 ... P37352 11863436
    16199 1gtt:B (1.7) BS01 CA 4.1.1.68
    5.3.3.10    		 GO:0003824 ... P37352 11863436
    16200 1gtt:C (1.7) BS01 CA 4.1.1.68
    5.3.3.10    		 GO:0003824 ... P37352 11863436
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023)(download the PDF file).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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