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BioLiP Library
Download all results in tab-seperated text for 903398 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    15201 1gkl:B (1.4) BS01 FER 3.2.1.8 N/A P51584 11738044
    15202 1gkm:A (1.0) BS01 CYS 4.3.1.3 N/A N/A 11895450
    15203 1gkp:A (1.295) BS01 ZN 3.5.2.2 GO:0005737 ... Q7SIE9 12079340
    15204 1gkp:A (1.295) BS02 ZN 3.5.2.2 GO:0005737 ... Q7SIE9 12079340
    15205 1gkp:B (1.295) BS01 ZN 3.5.2.2 GO:0005737 ... Q7SIE9 12079340
    15206 1gkp:B (1.295) BS02 ZN 3.5.2.2 GO:0005737 ... Q7SIE9 12079340
    15207 1gkp:C (1.295) BS01 ZN 3.5.2.2 GO:0005737 ... Q7SIE9 12079340
    15208 1gkp:C (1.295) BS02 ZN 3.5.2.2 GO:0005737 ... Q7SIE9 12079340
    15209 1gkp:D (1.295) BS01 ZN 3.5.2.2 GO:0005737 ... Q7SIE9 12079340
    15210 1gkp:D (1.295) BS02 ZN 3.5.2.2 GO:0005737 ... Q7SIE9 12079340
    15211 1gkp:E (1.295) BS01 ZN 3.5.2.2 GO:0005737 ... Q7SIE9 12079340
    15212 1gkp:E (1.295) BS02 ZN 3.5.2.2 GO:0005737 ... Q7SIE9 12079340
    15213 1gkp:F (1.295) BS01 ZN 3.5.2.2 GO:0005737 ... Q7SIE9 12079340
    15214 1gkp:F (1.295) BS02 ZN 3.5.2.2 GO:0005737 ... Q7SIE9 12079340
    15215 1gkq:A (2.6) BS01 ZN 3.5.2.2 GO:0005737 ... Q7SIE9 12079340
    15216 1gkq:A (2.6) BS02 ZN 3.5.2.2 GO:0005737 ... Q7SIE9 12079340
    15217 1gkq:B (2.6) BS01 ZN 3.5.2.2 GO:0005737 ... Q7SIE9 12079340
    15218 1gkq:B (2.6) BS02 ZN 3.5.2.2 GO:0005737 ... Q7SIE9 12079340
    15219 1gkq:C (2.6) BS01 ZN 3.5.2.2 GO:0005737 ... Q7SIE9 12079340
    15220 1gkq:C (2.6) BS02 ZN 3.5.2.2 GO:0005737 ... Q7SIE9 12079340
    15221 1gkq:D (2.6) BS01 ZN 3.5.2.2 GO:0005737 ... Q7SIE9 12079340
    15222 1gkq:D (2.6) BS02 ZN 3.5.2.2 GO:0005737 ... Q7SIE9 12079340
    15223 1gkr:A (2.6) BS01 ZN 3.5.2.- GO:0000256 ... P81006 12093275
    15224 1gkr:A (2.6) BS02 ZN 3.5.2.- GO:0000256 ... P81006 12093275
    15225 1gkr:B (2.6) BS01 ZN 3.5.2.- GO:0000256 ... P81006 12093275
    15226 1gkr:B (2.6) BS02 ZN 3.5.2.- GO:0000256 ... P81006 12093275
    15227 1gkr:C (2.6) BS01 ZN 3.5.2.- GO:0000256 ... P81006 12093275
    15228 1gkr:C (2.6) BS02 ZN 3.5.2.- GO:0000256 ... P81006 12093275
    15229 1gkr:D (2.6) BS01 ZN 3.5.2.- GO:0000256 ... P81006 12093275
    15230 1gkr:D (2.6) BS02 ZN 3.5.2.- GO:0000256 ... P81006 12093275
    15231 1gks:A (-1.00) BS01 HEM ? GO:0005506 ... P00122 8969306
    15232 1gkt:A (2.1) BS01 peptide 3.4.23.22 N/A P11838 11683623
    15233 1gky:A (2.0) BS01 SO4 2.7.4.8 GO:0004385 ... P15454 1314905
    15234 1gky:A (2.0) BS02 5GP 2.7.4.8 GO:0004385 ... P15454 1314905
    15235 1gkz:A (2.2) BS01 K 2.7.11.1
    2.7.11.4    		 GO:0004672 ... Q00972 11562470
    15236 1gkz:A (2.2) BS02 ADP 2.7.11.1
    2.7.11.4    		 GO:0004672 ... Q00972 11562470
    15237 1gl3:A (2.6) BS01 CYS 1.2.1.11 GO:0004073 ... P0A9Q9 11724560
    15238 1gl3:A (2.6) BS02 NDP 1.2.1.11 GO:0004073 ... P0A9Q9 11724560
    15239 1gl3:B (2.6) BS01 NDP 1.2.1.11 GO:0004073 ... P0A9Q9 11724560
    15240 1gl4:A (2.0) BS01 ZN ? N/A P10493 11574465
    15241 1gl6:A (2.8) BS01 GNP ? N/A Q04230 11214325
    15242 1gl6:A (2.8) BS02 GNP ? N/A Q04230 11214325
    15243 1gl6:B (2.8) BS01 GNP ? N/A Q04230 11214325
    15244 1gl6:D (2.8) BS01 GNP ? N/A Q04230 11214325
    15245 1gl6:E (2.8) BS01 GNP ? N/A Q04230 11214325
    15246 1gl6:F (2.8) BS01 GNP ? N/A Q04230 11214325
    15247 1gl6:G (2.8) BS01 GNP ? N/A Q04230 11214325
    15248 1gl7:A (3.0) BS01 ANP ? N/A Q04230 11214325
    15249 1gl7:B (3.0) BS01 ANP ? N/A Q04230 11214325
    15250 1gl7:D (3.0) BS01 ANP ? N/A Q04230 11214325
    15251 1gl7:E (3.0) BS01 ANP ? N/A Q04230 11214325
    15252 1gl7:E (3.0) BS02 ANP ? N/A Q04230 11214325
    15253 1gl7:F (3.0) BS01 ANP ? N/A Q04230 11214325
    15254 1gl7:G (3.0) BS01 ANP ? N/A Q04230 11214325
    15255 1gl9:B (3.2) BS01 ANP 5.6.2.- GO:0003676 ... O29238 11823434
    15256 1gl9:C (3.2) BS01 ANP 5.6.2.- GO:0003676 ... O29238 11823434
    15257 1gla:G (2.6) BS01 GOL 2.7.1.30 GO:0004370 ... P0A6F3 8430315
    15258 1glb:G (2.6) BS01 ADP 2.7.1.30 GO:0004370 ... P0A6F3 8430315
    15259 1glb:G (2.6) BS02 GOL 2.7.1.30 GO:0004370 ... P0A6F3 8430315
    15260 1glc:F (2.65) BS01 ZN 2.7.1.69 GO:0005515 ... P69783 8170944
    15261 1glc:G (2.65) BS01 G3H 2.7.1.30 GO:0004370 ... P0A6F3 8170944
    15262 1glc:G (2.65) BS02 ADP 2.7.1.30 GO:0004370 ... P0A6F3 8170944
    15263 1gld:G (2.93) BS01 MN 2.7.1.30 GO:0004370 ... P0A6F3 8170944
    15264 1gld:G (2.93) BS02 G3H 2.7.1.30 GO:0004370 ... P0A6F3 8170944
    15265 1gld:G (2.93) BS03 ADP 2.7.1.30 GO:0004370 ... P0A6F3 8170944
    15266 1gle:F (2.94) BS01 ZN 2.7.1.69 GO:0005515 ... P69783 8170944
    15267 1gle:G (2.94) BS01 G3H 2.7.1.30 GO:0004370 ... P0A6F3 8170944
    15268 1gle:G (2.94) BS02 ADP 2.7.1.30 GO:0004370 ... P0A6F3 8170944
    15269 1glf:O (2.62) BS01 PO4 2.7.1.30 GO:0004370 ... P0A6F3 9817843
    15270 1glf:O (2.62) BS02 ADP 2.7.1.30 GO:0004370 ... P0A6F3 9817843
    15271 1glf:O (2.62) BS03 GOL 2.7.1.30 GO:0004370 ... P0A6F3 9817843
    15272 1glf:X (2.62) BS01 PO4 2.7.1.30 GO:0004370 ... P0A6F3 9817843
    15273 1glf:X (2.62) BS02 ADP 2.7.1.30 GO:0004370 ... P0A6F3 9817843
    15274 1glf:X (2.62) BS03 GOL 2.7.1.30 GO:0004370 ... P0A6F3 9817843
    15275 1glf:Y (2.62) BS01 PO4 2.7.1.30 GO:0004370 ... P0A6F3 9817843
    15276 1glf:Y (2.62) BS02 ADP 2.7.1.30 GO:0004370 ... P0A6F3 9817843
    15277 1glf:Y (2.62) BS03 GOL 2.7.1.30 GO:0004370 ... P0A6F3 9817843
    15278 1glf:Z (2.62) BS01 PO4 2.7.1.30 GO:0004370 ... P0A6F3 9817843
    15279 1glf:Z (2.62) BS02 ADP 2.7.1.30 GO:0004370 ... P0A6F3 9817843
    15280 1glf:Z (2.62) BS03 GOL 2.7.1.30 GO:0004370 ... P0A6F3 9817843
    15281 1glg:A (2.0) BS01 GAL ? GO:0005509 ... P0AEE5 8161535
    15282 1glg:A (2.0) BS02 CA ? GO:0005509 ... P0AEE5 8161535
    15283 1glh:A (2.0) BS01 NA 3.2.1.73 GO:0004553 ... P23904 8200344
    15284 1gli:A (2.5) BS01 HEM ? GO:0004601 ... P69905 8647854
    15285 1gli:B (2.5) BS01 HEM ? GO:0004601 ... P68871 8647854
    15286 1gli:C (2.5) BS01 HEM ? GO:0004601 ... P69905 8647854
    15287 1gli:D (2.5) BS01 HEM ? GO:0004601 ... P68871 8647854
    15288 1glj:O (3.0) BS01 ATS 2.7.1.30 GO:0004370 ... P0A6F3 10090737
    15289 1glj:O (3.0) BS02 GOL 2.7.1.30 GO:0004370 ... P0A6F3 10090737
    15290 1glj:Y (3.0) BS01 ATS 2.7.1.30 GO:0004370 ... P0A6F3 10090737
    15291 1glj:Y (3.0) BS02 GOL 2.7.1.30 GO:0004370 ... P0A6F3 10090737
    15292 1gll:O (3.0) BS01 ACP 2.7.1.30 GO:0004370 ... P0A6F3 10090737
    15293 1gll:O (3.0) BS02 GOL 2.7.1.30 GO:0004370 ... P0A6F3 10090737
    15294 1gll:Y (3.0) BS01 ACP 2.7.1.30 GO:0004370 ... P0A6F3 10090737
    15295 1gll:Y (3.0) BS02 GOL 2.7.1.30 GO:0004370 ... P0A6F3 10090737
    15296 1glm:A (2.4) BS01 MAN 3.2.1.3 GO:0004339 ... P69327 8176747
    15297 1glm:A (2.4) BS02 MAN 3.2.1.3 GO:0004339 ... P69327 8176747
    15298 1glm:A (2.4) BS03 MAN 3.2.1.3 GO:0004339 ... P69327 8176747
    15299 1glm:A (2.4) BS04 MAN 3.2.1.3 GO:0004339 ... P69327 8176747
    15300 1glm:A (2.4) BS05 MAN 3.2.1.3 GO:0004339 ... P69327 8176747
    15301 1glm:A (2.4) BS06 MAN 3.2.1.3 GO:0004339 ... P69327 8176747
    15302 1glm:A (2.4) BS07 MAN 3.2.1.3 GO:0004339 ... P69327 8176747
    15303 1glm:A (2.4) BS08 MAN 3.2.1.3 GO:0004339 ... P69327 8176747
    15304 1glm:A (2.4) BS09 MAN 3.2.1.3 GO:0004339 ... P69327 8176747
    15305 1glp:A (1.9) BS01 GTS 2.5.1.18 GO:0000302 ... P19157 8145243
    15306 1glp:B (1.9) BS01 GTS 2.5.1.18 GO:0000302 ... P19157 8145243
    15307 1glq:A (1.8) BS01 GTB 2.5.1.18 GO:0000302 ... P19157 8145243
    15308 1glq:B (1.8) BS01 GTB 2.5.1.18 GO:0000302 ... P19157 8145243
    15309 1glu:A (2.9) BS01 dna ? GO:0003700 ... P06536 1865905
    15310 1glu:A (2.9) BS02 dna ? GO:0003700 ... P06536 1865905
    15311 1glu:A (2.9) BS03 ZN ? GO:0003700 ... P06536 1865905
    15312 1glu:A (2.9) BS04 ZN ? GO:0003700 ... P06536 1865905
    15313 1glu:B (2.9) BS01 dna ? GO:0003700 ... P06536 1865905
    15314 1glu:B (2.9) BS02 dna ? GO:0003700 ... P06536 1865905
    15315 1glu:B (2.9) BS03 ZN ? GO:0003700 ... P06536 1865905
    15316 1glu:B (2.9) BS04 ZN ? GO:0003700 ... P06536 1865905
    15317 1gm4:A (2.05) BS01 HEC ? GO:0009055 ... Q9L915 11551953
    15318 1gm4:A (2.05) BS02 HEC ? GO:0009055 ... Q9L915 11551953
    15319 1gm4:A (2.05) BS03 HEC ? GO:0009055 ... Q9L915 11551953
    15320 1gm4:A (2.05) BS04 HEC ? GO:0009055 ... Q9L915 11551953
    15321 1gm4:A (2.05) BS05 SO4 ? GO:0009055 ... Q9L915 11551953
    15322 1gm5:A (3.24) BS01 dna 3.6.4.12 GO:0003676 ... Q9WY48 11595187
    15323 1gm5:A (3.24) BS02 dna 3.6.4.12 GO:0003676 ... Q9WY48 11595187
    15324 1gm5:A (3.24) BS03 dna 3.6.4.12 GO:0003676 ... Q9WY48 11595187
    15325 1gm5:A (3.24) BS04 ADP 3.6.4.12 GO:0003676 ... Q9WY48 11595187
    15326 1gm6:A (2.13) BS01 GOL ? GO:0005549 ... P81608 12027882
    15327 1gm7:B (1.45) BS01 CA 3.5.1.11 GO:0016787 ... P06875 11601852
    15328 1gm7:B (1.45) BS02 PNN 3.5.1.11 GO:0016787 ... P06875 11601852
    15329 1gm8:B (2.0) BS01 CA 3.5.1.11 GO:0016787 ... P06875 11601852
    15330 1gm8:B (2.0) BS02 SOX 3.5.1.11 GO:0016787 ... P06875 11601852
    15331 1gm9:A (1.8) BS01 EDO 3.5.1.11 GO:0016787 ... P06875 11601852
    15332 1gm9:A (1.8) BS02 EDO 3.5.1.11 GO:0016787 ... P06875 11601852
    15333 1gm9:A (1.8) BS03 SOX 3.5.1.11 GO:0016787 ... P06875 11601852
    15334 1gm9:B (1.8) BS01 EDO 3.5.1.11 GO:0016787 ... P06875 11601852
    15335 1gm9:B (1.8) BS02 EDO 3.5.1.11 GO:0016787 ... P06875 11601852
    15336 1gm9:B (1.8) BS03 EDO 3.5.1.11 GO:0016787 ... P06875 11601852
    15337 1gm9:B (1.8) BS04 EDO 3.5.1.11 GO:0016787 ... P06875 11601852
    15338 1gm9:B (1.8) BS05 EDO 3.5.1.11 GO:0016787 ... P06875 11601852
    15339 1gm9:B (1.8) BS06 EDO 3.5.1.11 GO:0016787 ... P06875 11601852
    15340 1gm9:B (1.8) BS07 EDO 3.5.1.11 GO:0016787 ... P06875 11601852
    15341 1gm9:B (1.8) BS08 EDO 3.5.1.11 GO:0016787 ... P06875 11601852
    15342 1gm9:B (1.8) BS09 EDO 3.5.1.11 GO:0016787 ... P06875 11601852
    15343 1gm9:B (1.8) BS10 CA 3.5.1.11 GO:0016787 ... P06875 11601852
    15344 1gm9:B (1.8) BS11 SOX 3.5.1.11 GO:0016787 ... P06875 11601852
    15345 1gmb:A (2.0) BS01 HEC ? GO:0009055 ... Q9L915 11551953
    15346 1gmb:A (2.0) BS02 HEC ? GO:0009055 ... Q9L915 11551953
    15347 1gmb:A (2.0) BS03 HEC ? GO:0009055 ... Q9L915 11551953
    15348 1gmb:A (2.0) BS04 HEC ? GO:0009055 ... Q9L915 11551953
    15349 1gmb:A (2.0) BS05 SO4 ? GO:0009055 ... Q9L915 11551953
    15350 1gmc:F (2.2) BS01 peptide 3.4.21.1 GO:0004252 ... P00766 8003497
    15351 1gmc:G (2.2) BS01 peptide 3.4.21.1 GO:0004252 ... P00766 8003497
    15352 1gmc:G (2.2) BS02 peptide 3.4.21.1 GO:0004252 ... P00766 8003497
    15353 1gmd:F (2.2) BS01 peptide 3.4.21.1 GO:0004252 ... P00766 8003497
    15354 1gmd:F (2.2) BS02 peptide 3.4.21.1 GO:0004252 ... P00766 8003497
    15355 1gmd:F (2.2) BS03 HEX 3.4.21.1 GO:0004252 ... P00766 8003497
    15356 1gmd:F (2.2) BS04 HEX 3.4.21.1 GO:0004252 ... P00766 8003497
    15357 1gmd:F (2.2) BS05 HEX 3.4.21.1 GO:0004252 ... P00766 8003497
    15358 1gmd:F (2.2) BS06 HEX 3.4.21.1 GO:0004252 ... P00766 8003497
    15359 1gmd:F (2.2) BS07 HEX 3.4.21.1 GO:0004252 ... P00766 8003497
    15360 1gmd:G (2.2) BS01 peptide 3.4.21.1 GO:0004252 ... P00766 8003497
    15361 1gmd:G (2.2) BS02 peptide 3.4.21.1 GO:0004252 ... P00766 8003497
    15362 1gmd:G (2.2) BS03 HEX 3.4.21.1 GO:0004252 ... P00766 8003497
    15363 1gmd:G (2.2) BS04 HEX 3.4.21.1 GO:0004252 ... P00766 8003497
    15364 1gmh:F (2.1) BS01 peptide 3.4.21.1 GO:0004252 ... P00766 1942036
    15365 1gmh:G (2.1) BS01 peptide 3.4.21.1 GO:0004252 ... P00766 1942036
    15366 1gmh:G (2.1) BS02 ISP 3.4.21.1 GO:0004252 ... P00766 1942036
    15367 1gmm:A (2.0) BS01 CA 3.2.1.8 GO:0030246 ... O52780 11673472
    15368 1gmn:A (2.3) BS01 SGN ? N/A P14210 11597998
    15369 1gmn:A (2.3) BS02 IDS ? N/A P14210 11597998
    15370 1gmn:A (2.3) BS03 SGN ? N/A P14210 11597998
    15371 1gmn:A (2.3) BS04 IDS ? N/A P14210 11597998
    15372 1gmn:B (2.3) BS01 IDS ? N/A P14210 11597998
    15373 1gmo:A (3.0) BS01 SO4 ? N/A P14210 11597998
    15374 1gmo:B (3.0) BS01 IDS ? N/A P14210 11597998
    15375 1gmo:B (3.0) BS02 SGN ? N/A P14210 11597998
    15376 1gmo:B (3.0) BS03 SGN ? N/A P14210 11597998
    15377 1gmo:B (3.0) BS04 SGN ? N/A P14210 11597998
    15378 1gmo:B (3.0) BS05 IDS ? N/A P14210 11597998
    15379 1gmo:B (3.0) BS06 SO4 ? N/A P14210 11597998
    15380 1gmo:C (3.0) BS01 SGN ? N/A P14210 11597998
    15381 1gmo:C (3.0) BS02 IDS ? N/A P14210 11597998
    15382 1gmo:C (3.0) BS03 SO4 ? N/A P14210 11597998
    15383 1gmo:D (3.0) BS01 SO4 ? N/A P14210 11597998
    15384 1gmo:E (3.0) BS01 SO4 ? N/A P14210 11597998
    15385 1gmo:F (3.0) BS01 SGN ? N/A P14210 11597998
    15386 1gmo:F (3.0) BS02 SGN ? N/A P14210 11597998
    15387 1gmo:F (3.0) BS03 SGN ? N/A P14210 11597998
    15388 1gmo:F (3.0) BS04 SO4 ? N/A P14210 11597998
    15389 1gmo:F (3.0) BS05 SO4 ? N/A P14210 11597998
    15390 1gmo:G (3.0) BS01 SGN ? N/A P14210 11597998
    15391 1gmo:H (3.0) BS01 SGN ? N/A P14210 11597998
    15392 1gmo:H (3.0) BS02 SGN ? N/A P14210 11597998
    15393 1gmo:H (3.0) BS03 SO4 ? N/A P14210 11597998
    15394 1gmp:A (1.7) BS01 2GP 4.6.1.24 GO:0003723 ... P05798 15299531
    15395 1gmp:B (1.7) BS01 2GP 4.6.1.24 GO:0003723 ... P05798 15299531
    15396 1gmr:A (1.77) BS01 2GP 4.6.1.24 GO:0003723 ... P05798 15299531
    15397 1gmr:B (1.77) BS01 2GP 4.6.1.24 GO:0003723 ... P05798 15299531
    15398 1gmw:A (1.5) BS01 CU ? GO:0005737 ... P18317 11591723
    15399 1gmw:B (1.5) BS01 CU ? GO:0005737 ... P18317 11591723
    15400 1gmw:C (1.5) BS01 CU ? GO:0005737 ... P18317 11591723
    Reference:
    • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023)(download the PDF file).
    • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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