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BioLiP
Download all results in tab-seperated text for 903398 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
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  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
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    # PDB
    (Resolution Å)
    Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    13001 1fpy:D (2.89) BS04 PPQ 6.3.1.2 GO:0003824 ... P0A1P6 11329256
    13002 1fpy:E (2.89) BS01 MN 6.3.1.2 GO:0003824 ... P0A1P6 11329256
    13003 1fpy:E (2.89) BS02 MN 6.3.1.2 GO:0003824 ... P0A1P6 11329256
    13004 1fpy:E (2.89) BS03 ADP 6.3.1.2 GO:0003824 ... P0A1P6 11329256
    13005 1fpy:E (2.89) BS04 PPQ 6.3.1.2 GO:0003824 ... P0A1P6 11329256
    13006 1fpy:F (2.89) BS01 MN 6.3.1.2 GO:0003824 ... P0A1P6 11329256
    13007 1fpy:F (2.89) BS02 MN 6.3.1.2 GO:0003824 ... P0A1P6 11329256
    13008 1fpy:F (2.89) BS03 ADP 6.3.1.2 GO:0003824 ... P0A1P6 11329256
    13009 1fpy:F (2.89) BS04 PPQ 6.3.1.2 GO:0003824 ... P0A1P6 11329256
    13010 1fpy:G (2.89) BS01 MN 6.3.1.2 GO:0003824 ... P0A1P6 11329256
    13011 1fpy:G (2.89) BS02 MN 6.3.1.2 GO:0003824 ... P0A1P6 11329256
    13012 1fpy:G (2.89) BS03 ADP 6.3.1.2 GO:0003824 ... P0A1P6 11329256
    13013 1fpy:G (2.89) BS04 PPQ 6.3.1.2 GO:0003824 ... P0A1P6 11329256
    13014 1fpy:H (2.89) BS01 MN 6.3.1.2 GO:0003824 ... P0A1P6 11329256
    13015 1fpy:H (2.89) BS02 MN 6.3.1.2 GO:0003824 ... P0A1P6 11329256
    13016 1fpy:H (2.89) BS03 ADP 6.3.1.2 GO:0003824 ... P0A1P6 11329256
    13017 1fpy:H (2.89) BS04 PPQ 6.3.1.2 GO:0003824 ... P0A1P6 11329256
    13018 1fpy:I (2.89) BS01 MN 6.3.1.2 GO:0003824 ... P0A1P6 11329256
    13019 1fpy:I (2.89) BS02 MN 6.3.1.2 GO:0003824 ... P0A1P6 11329256
    13020 1fpy:I (2.89) BS03 ADP 6.3.1.2 GO:0003824 ... P0A1P6 11329256
    13021 1fpy:I (2.89) BS04 PPQ 6.3.1.2 GO:0003824 ... P0A1P6 11329256
    13022 1fpy:J (2.89) BS01 MN 6.3.1.2 GO:0003824 ... P0A1P6 11329256
    13023 1fpy:J (2.89) BS02 MN 6.3.1.2 GO:0003824 ... P0A1P6 11329256
    13024 1fpy:J (2.89) BS03 ADP 6.3.1.2 GO:0003824 ... P0A1P6 11329256
    13025 1fpy:J (2.89) BS04 PPQ 6.3.1.2 GO:0003824 ... P0A1P6 11329256
    13026 1fpy:K (2.89) BS01 MN 6.3.1.2 GO:0003824 ... P0A1P6 11329256
    13027 1fpy:K (2.89) BS02 MN 6.3.1.2 GO:0003824 ... P0A1P6 11329256
    13028 1fpy:K (2.89) BS03 ADP 6.3.1.2 GO:0003824 ... P0A1P6 11329256
    13029 1fpy:K (2.89) BS04 PPQ 6.3.1.2 GO:0003824 ... P0A1P6 11329256
    13030 1fpy:L (2.89) BS01 MN 6.3.1.2 GO:0003824 ... P0A1P6 11329256
    13031 1fpy:L (2.89) BS02 MN 6.3.1.2 GO:0003824 ... P0A1P6 11329256
    13032 1fpy:L (2.89) BS03 ADP 6.3.1.2 GO:0003824 ... P0A1P6 11329256
    13033 1fpy:L (2.89) BS04 PPQ 6.3.1.2 GO:0003824 ... P0A1P6 11329256
    13034 1fq1:B (3.0) BS01 MG 2.7.11.22 GO:0000082 ... P24941 11463386
    13035 1fq1:B (3.0) BS02 ATP 2.7.11.22 GO:0000082 ... P24941 11463386
    13036 1fq4:A (2.7) BS01 BMA 3.4.23.25 GO:0000324 ... P07267 11061973
    13037 1fq4:A (2.7) BS02 2Y2 3.4.23.25 GO:0000324 ... P07267 11061973 PDBbind: -logKd/Ki=6.40, Ki=398.0nM
    13038 1fq5:A (2.4) BS01 0GM 3.4.23.25 GO:0000324 ... P07267 11061973 MOAD: Ki=4nM
    PDBbind: -logKd/Ki=8.40, Ki=4.0nM
    13039 1fq6:A (2.7) BS01 0QF 3.4.23.25 GO:0000324 ... P07267 11061973 PDBbind: -logKd/Ki=7.86, Ki=13.7nM
    13040 1fq7:A (2.8) BS01 BMA 3.4.23.25 GO:0000324 ... P07267 11061973
    13041 1fq7:A (2.8) BS02 2Y3 3.4.23.25 GO:0000324 ... P07267 11061973 PDBbind: -logKd/Ki=5.43, Ki=3.74uM
    13042 1fq8:A (2.8) BS01 2Y4 3.4.23.25 GO:0000324 ... P07267 11061973 PDBbind: -logKd/Ki=6.03, Ki=0.94uM
    13043 1fq9:A (3.0) BS01 SGN ? GO:0008083 ... P09038 11030354
    13044 1fq9:A (3.0) BS02 IDS ? GO:0008083 ... P09038 11030354
    13045 1fq9:A (3.0) BS03 SGN ? GO:0008083 ... P09038 11030354
    13046 1fq9:A (3.0) BS04 IDS ? GO:0008083 ... P09038 11030354
    13047 1fq9:B (3.0) BS01 SGN ? GO:0008083 ... P09038 11030354
    13048 1fq9:B (3.0) BS02 IDS ? GO:0008083 ... P09038 11030354
    13049 1fq9:B (3.0) BS03 SGN ? GO:0008083 ... P09038 11030354
    13050 1fq9:C (3.0) BS01 SGN 2.7.10.1 N/A P11362 11030354
    13051 1fq9:C (3.0) BS02 UAP 2.7.10.1 N/A P11362 11030354
    13052 1fq9:C (3.0) BS03 IDS 2.7.10.1 N/A P11362 11030354
    13053 1fq9:D (3.0) BS01 UAP 2.7.10.1 N/A P11362 11030354
    13054 1fq9:D (3.0) BS02 SGN 2.7.10.1 N/A P11362 11030354
    13055 1fq9:D (3.0) BS03 UAP 2.7.10.1 N/A P11362 11030354
    13056 1fqa:A (1.9) BS01 GLC ? GO:0005515 ... P0AEX9 11237621
    13057 1fqa:A (1.9) BS02 GLC ? GO:0005515 ... P0AEX9 11237621
    13058 1fqa:A (1.9) BS03 GLC ? GO:0005515 ... P0AEX9 11237621
    13059 1fqb:A (1.9) BS01 GLC ? GO:0005515 ... P0AEX9 11237621
    13060 1fqb:A (1.9) BS02 GLC ? GO:0005515 ... P0AEX9 11237621
    13061 1fqc:A (2.3) BS01 GLO ? GO:0005515 ... P0AEX9 11237621
    13062 1fqc:A (2.3) BS02 GLC ? GO:0005515 ... P0AEX9 11237621
    13063 1fqc:A (2.3) BS03 GLC ? GO:0005515 ... P0AEX9 11237621
    13064 1fqd:A (2.3) BS01 GLO ? GO:0005515 ... P0AEX9 11237621
    13065 1fqd:A (2.3) BS02 GLC ? GO:0005515 ... P0AEX9 11237621
    13066 1fqd:A (2.3) BS03 GLC ? GO:0005515 ... P0AEX9 11237621
    13067 1fqd:A (2.3) BS04 GLC ? GO:0005515 ... P0AEX9 11237621
    13068 1fqe:A (1.8) BS01 FE ? GO:0005576 ... P02787 11327820
    13069 1fqe:A (1.8) BS02 CO3 ? GO:0005576 ... P02787 11327820
    13070 1fqf:A (2.1) BS01 FE ? GO:0005576 ... P02787 11327820
    13071 1fqf:A (2.1) BS02 CO3 ? GO:0005576 ... P02787 11327820
    13072 1fqg:A (1.7) BS01 PNM 3.5.2.6 GO:0005515 ... P62593 1436034
    13073 1fqj:A (2.02) BS01 MG ? GO:0003924 ... P04695
    P10824
    11234020
    13074 1fqj:A (2.02) BS02 ALF ? GO:0003924 ... P04695
    P10824
    11234020
    13075 1fqj:A (2.02) BS03 GDP ? GO:0003924 ... P04695
    P10824
    11234020
    13076 1fqj:D (2.02) BS01 MG ? GO:0003924 ... P04695
    P10824
    11234020
    13077 1fqj:D (2.02) BS02 ALF ? GO:0003924 ... P04695
    P10824
    11234020
    13078 1fqj:D (2.02) BS03 GDP ? GO:0003924 ... P04695
    P10824
    11234020
    13079 1fqk:A (2.3) BS01 MG ? GO:0003924 ... P04695
    P10824
    11234020
    13080 1fqk:A (2.3) BS02 ALF ? GO:0003924 ... P04695
    P10824
    11234020
    13081 1fqk:A (2.3) BS03 GDP ? GO:0003924 ... P04695
    P10824
    11234020
    13082 1fqk:C (2.3) BS01 MG ? GO:0003924 ... P04695
    P10824
    11234020
    13083 1fqk:C (2.3) BS02 ALF ? GO:0003924 ... P04695
    P10824
    11234020
    13084 1fqk:C (2.3) BS03 GDP ? GO:0003924 ... P04695
    P10824
    11234020
    13085 1fql:A (2.0) BS01 ZN 4.2.1.1
    4.2.1.69
    GO:0002009 ... P00918 11076507
    13086 1fqm:A (2.0) BS01 ZN 4.2.1.1
    4.2.1.69
    GO:0002009 ... P00918 11076507
    13087 1fqo:A (2.2) BS01 F6R 3.5.99.6 GO:0004342 ... P0A759 11752775
    13088 1fqo:A (2.2) BS02 F6R 3.5.99.6 GO:0004342 ... P0A759 11752775
    13089 1fqo:B (2.2) BS01 F6R 3.5.99.6 GO:0004342 ... P0A759 11752775
    13090 1fqo:B (2.2) BS02 F6R 3.5.99.6 GO:0004342 ... P0A759 11752775
    13091 1fqr:A (2.0) BS01 CO 4.2.1.1
    4.2.1.69
    GO:0002009 ... P00918 11076507
    13092 1fqt:A (1.6) BS01 FES 1.14.12.- GO:0009056 ... P37332 11188691
    13093 1fqt:B (1.6) BS01 FES 1.14.12.- GO:0009056 ... P37332 11188691
    13094 1fqw:A (2.37) BS01 MN ? GO:0000156 ... P0AE67 11279165
    13095 1fqw:A (2.37) BS02 BEF ? GO:0000156 ... P0AE67 11279165
    13096 1fqw:B (2.37) BS01 MN ? GO:0000156 ... P0AE67 11279165
    13097 1fqw:B (2.37) BS02 BEF ? GO:0000156 ... P0AE67 11279165
    13098 1fqx:A (3.1) BS01 0ZT 2.7.7.-
    2.7.7.49
    2.7.7.7
    3.1.-.-
    3.1.13.2
    3.1.26.13
    3.4.23.16
    GO:0004190 ... P03367 11223536
    13099 1fqx:B (3.1) BS01 0ZT 2.7.7.-
    2.7.7.49
    2.7.7.7
    3.1.-.-
    3.1.13.2
    3.1.26.13
    3.4.23.16
    GO:0004190 ... P03367 11223536
    13100 1fr2:B (1.6) BS01 ZN 3.1.-.- GO:0004519 ... P09883 N/A
    13101 1fr3:A (1.5) BS01 WO4 ? GO:0015689 ... Q7SIF7 11080635
    13102 1fr3:A (1.5) BS02 WO4 ? GO:0015689 ... Q7SIF7 11080635
    13103 1fr3:A (1.5) BS03 WO4 ? GO:0015689 ... Q7SIF7 11080635
    13104 1fr3:B (1.5) BS01 WO4 ? GO:0015689 ... Q7SIF7 11080635
    13105 1fr3:B (1.5) BS02 WO4 ? GO:0015689 ... Q7SIF7 11080635
    13106 1fr3:C (1.5) BS01 WO4 ? GO:0015689 ... Q7SIF7 11080635
    13107 1fr3:C (1.5) BS02 WO4 ? GO:0015689 ... Q7SIF7 11080635
    13108 1fr3:D (1.5) BS01 WO4 ? GO:0015689 ... Q7SIF7 11080635
    13109 1fr3:D (1.5) BS02 WO4 ? GO:0015689 ... Q7SIF7 11080635
    13110 1fr3:E (1.5) BS01 WO4 ? GO:0015689 ... Q7SIF7 11080635
    13111 1fr3:E (1.5) BS02 WO4 ? GO:0015689 ... Q7SIF7 11080635
    13112 1fr3:F (1.5) BS01 WO4 ? GO:0015689 ... Q7SIF7 11080635
    13113 1fr3:F (1.5) BS02 WO4 ? GO:0015689 ... Q7SIF7 11080635
    13114 1fr3:F (1.5) BS03 WO4 ? GO:0015689 ... Q7SIF7 11080635
    13115 1fr3:G (1.5) BS01 WO4 ? GO:0015689 ... Q7SIF7 11080635
    13116 1fr3:G (1.5) BS02 WO4 ? GO:0015689 ... Q7SIF7 11080635
    13117 1fr3:H (1.5) BS01 WO4 ? GO:0015689 ... Q7SIF7 11080635
    13118 1fr3:H (1.5) BS02 WO4 ? GO:0015689 ... Q7SIF7 11080635
    13119 1fr3:I (1.5) BS01 WO4 ? GO:0015689 ... Q7SIF7 11080635
    13120 1fr3:I (1.5) BS02 WO4 ? GO:0015689 ... Q7SIF7 11080635
    13121 1fr3:I (1.5) BS03 WO4 ? GO:0015689 ... Q7SIF7 11080635
    13122 1fr3:J (1.5) BS01 WO4 ? GO:0015689 ... Q7SIF7 11080635
    13123 1fr3:J (1.5) BS02 WO4 ? GO:0015689 ... Q7SIF7 11080635
    13124 1fr3:K (1.5) BS01 WO4 ? GO:0015689 ... Q7SIF7 11080635
    13125 1fr3:K (1.5) BS02 WO4 ? GO:0015689 ... Q7SIF7 11080635
    13126 1fr3:L (1.5) BS01 WO4 ? GO:0015689 ... Q7SIF7 11080635
    13127 1fr3:L (1.5) BS02 WO4 ? GO:0015689 ... Q7SIF7 11080635
    13128 1fr3:L (1.5) BS03 WO4 ? GO:0015689 ... Q7SIF7 11080635
    13129 1fr4:A (1.6) BS01 CU 4.2.1.1
    4.2.1.69
    GO:0002009 ... P00918 11076507
    13130 1fr6:A (2.5) BS01 AZR 3.5.2.6 GO:0008800 ... Q46041 2300174
    13131 1fr6:A (2.5) BS02 AZR 3.5.2.6 GO:0008800 ... Q46041 2300174
    13132 1fr6:B (2.5) BS01 AZR 3.5.2.6 GO:0008800 ... Q46041 2300174
    13133 1fr6:B (2.5) BS02 AZR 3.5.2.6 GO:0008800 ... Q46041 2300174
    13134 1fr7:A (1.5) BS01 ZN 4.2.1.1
    4.2.1.69
    GO:0002009 ... P00918 11076507
    13135 1fr7:B (1.5) BS01 ZN 4.2.1.1
    4.2.1.69
    GO:0002009 ... P00918 11076507
    13136 1fr8:A (2.4) BS01 GDU 2.4.1.-
    2.4.1.22
    2.4.1.275
    2.4.1.38
    2.4.1.90
    GO:0005975 ... P08037 10393171
    13137 1fr8:B (2.4) BS01 GDU 2.4.1.-
    2.4.1.22
    2.4.1.275
    2.4.1.38
    2.4.1.90
    GO:0005975 ... P08037 10393171
    13138 1frb:A (1.7) BS01 NDP 1.1.1.21 GO:0004032 ... P45377 7578036
    13139 1frb:A (1.7) BS02 ZST 1.1.1.21 GO:0004032 ... P45377 7578036 MOAD: Kd=30nM
    13140 1frd:A (1.7) BS01 FES ? GO:0009055 ... P11053 8329401
    13141 1fre:A (-1.00) BS01 ZN ? GO:0008270 ... Q92021 8846787
    13142 1frf:L (2.7) BS01 FE 1.12.2.1 GO:0008901 ... P18188 9751716
    13143 1frf:L (2.7) BS02 MG 1.12.2.1 GO:0008901 ... P18188 9751716
    13144 1frf:S (2.7) BS01 SF4 1.12.2.1 GO:0008901 ... P18187 9751716
    13145 1frf:S (2.7) BS02 F3S 1.12.2.1 GO:0008901 ... P18187 9751716
    13146 1frf:S (2.7) BS03 SF4 1.12.2.1 GO:0008901 ... P18187 9751716
    13147 1frg:H (2.8) BS01 peptide ? N/A P01864 7520084
    13148 1frg:L (2.8) BS01 peptide ? GO:0005576 ... P01837 7520084
    13149 1frh:A (2.3) BS01 SF4 ? GO:0003677 ... P00214 8132582
    13150 1frh:A (2.3) BS02 F3S ? GO:0003677 ... P00214 8132582
    13151 1fri:A (2.1) BS01 SF4 ? GO:0003677 ... P00214 8132582
    13152 1fri:A (2.1) BS02 F3S ? GO:0003677 ... P00214 8132582
    13153 1frj:A (2.3) BS01 SF4 ? GO:0003677 ... P00214 8132582
    13154 1frj:A (2.3) BS02 F3S ? GO:0003677 ... P00214 8132582
    13155 1frk:A (2.1) BS01 SF4 ? GO:0003677 ... P00214 8132582
    13156 1frk:A (2.1) BS02 F3S ? GO:0003677 ... P00214 8132582
    13157 1frl:A (2.3) BS01 SF4 ? GO:0003677 ... P00214 8132582
    13158 1frl:A (2.3) BS02 F3S ? GO:0003677 ... P00214 8132582
    13159 1frm:A (2.3) BS01 SF4 ? GO:0003677 ... P00214 8132582
    13160 1frm:A (2.3) BS02 F3S ? GO:0003677 ... P00214 8132582
    13161 1frn:A (2.0) BS01 FAD 1.18.1.2 GO:0016491 ... P00455 7677850
    13162 1fro:A (2.2) BS01 ZN 4.4.1.5 GO:0004462 ... Q04760 9218781
    13163 1fro:A (2.2) BS02 GSB 4.4.1.5 GO:0004462 ... Q04760 9218781
    13164 1fro:A (2.2) BS03 ZN 4.4.1.5 GO:0004462 ... Q04760 9218781
    13165 1fro:A (2.2) BS04 GSB 4.4.1.5 GO:0004462 ... Q04760 9218781
    13166 1fro:B (2.2) BS01 ZN 4.4.1.5 GO:0004462 ... Q04760 9218781
    13167 1fro:B (2.2) BS02 GSB 4.4.1.5 GO:0004462 ... Q04760 9218781
    13168 1fro:B (2.2) BS03 ZN 4.4.1.5 GO:0004462 ... Q04760 9218781
    13169 1fro:B (2.2) BS04 GSB 4.4.1.5 GO:0004462 ... Q04760 9218781
    13170 1fro:C (2.2) BS01 ZN 4.4.1.5 GO:0004462 ... Q04760 9218781
    13171 1fro:C (2.2) BS02 GSB 4.4.1.5 GO:0004462 ... Q04760 9218781
    13172 1fro:C (2.2) BS03 ZN 4.4.1.5 GO:0004462 ... Q04760 9218781
    13173 1fro:C (2.2) BS04 GSB 4.4.1.5 GO:0004462 ... Q04760 9218781
    13174 1fro:D (2.2) BS01 ZN 4.4.1.5 GO:0004462 ... Q04760 9218781
    13175 1fro:D (2.2) BS02 GSB 4.4.1.5 GO:0004462 ... Q04760 9218781
    13176 1fro:D (2.2) BS03 ZN 4.4.1.5 GO:0004462 ... Q04760 9218781
    13177 1fro:D (2.2) BS04 GSB 4.4.1.5 GO:0004462 ... Q04760 9218781
    13178 1frp:A (2.0) BS01 FDP 3.1.3.11 GO:0005737 ... P00636 7809062
    13179 1frp:A (2.0) BS02 ZN 3.1.3.11 GO:0005737 ... P00636 7809062
    13180 1frp:A (2.0) BS03 AMP 3.1.3.11 GO:0005737 ... P00636 7809062 BindingDB: IC50=1300nM
    13181 1frp:B (2.0) BS01 FDP 3.1.3.11 GO:0005737 ... P00636 7809062
    13182 1frp:B (2.0) BS02 ZN 3.1.3.11 GO:0005737 ... P00636 7809062
    13183 1frp:B (2.0) BS03 AMP 3.1.3.11 GO:0005737 ... P00636 7809062 BindingDB: IC50=1300nM
    13184 1frq:A (1.95) BS01 FAD 1.18.1.2 GO:0016491 ... P00455 9852055
    13185 1frr:A (1.8) BS01 FES ? GO:0009055 ... P00235 15299454
    13186 1frr:B (1.8) BS01 FES ? GO:0009055 ... P00235 15299454
    13187 1frt:C (4.5) BS01 GAL N/A N/A N/A 7969498
    13188 1frv:A (2.85) BS01 SF4 1.12.2.1 GO:0008901 ... P12943 7854413
    13189 1frv:A (2.85) BS02 F3S 1.12.2.1 GO:0008901 ... P12943 7854413
    13190 1frv:A (2.85) BS03 SF4 1.12.2.1 GO:0008901 ... P12943 7854413
    13191 1frv:B (2.85) BS01 NI 1.12.2.1 GO:0008901 ... P12944 7854413
    13192 1frv:B (2.85) BS02 FEL 1.12.2.1 GO:0008901 ... P12944 7854413
    13193 1frv:C (2.85) BS01 SF4 1.12.2.1 GO:0008901 ... P12943 7854413
    13194 1frv:C (2.85) BS02 F3S 1.12.2.1 GO:0008901 ... P12943 7854413
    13195 1frv:C (2.85) BS03 SF4 1.12.2.1 GO:0008901 ... P12943 7854413
    13196 1frv:D (2.85) BS01 SF4 1.12.2.1 GO:0008901 ... P12944 7854413
    13197 1frv:D (2.85) BS02 NI 1.12.2.1 GO:0008901 ... P12944 7854413
    13198 1frv:D (2.85) BS03 FEL 1.12.2.1 GO:0008901 ... P12944 7854413
    13199 1frw:A (1.75) BS01 MN 2.7.7.77 GO:0000287 ... P32173 10978347
    13200 1frw:A (1.75) BS02 GTP 2.7.7.77 GO:0000287 ... P32173 10978347

    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
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