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●TM-score ●TM-align ●US-align ●MM-align ●RNA-align ●NW-align ●LS-align ●EDTSurf ●MVP ●MVP-Fit ●SPICKER ●HAAD ●PSSpred ●3DRobot ●MR-REX ●I-TASSER-MR ●SVMSEQ ●NeBcon ●ResPRE ●TripletRes ●DeepPotential ●WDL-RF ●ATPbind ●DockRMSD ●DeepMSA ●FASPR ●EM-Refiner ●GPU-I-TASSER

●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
Download all results in tab-seperated text for 2302 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    801 6kgx:NJ (2.8) BS04 PEB ? GO:0009507 ... E2IH77 32076272
    802 6kgx:O1 (2.8) BS01 PEB ? GO:0009507 ... P11393 32076272
    803 6kgx:O1 (2.8) BS02 PEB ? GO:0009507 ... P11393 32076272
    804 6kgx:O1 (2.8) BS03 PEB ? GO:0009507 ... P11393 32076272
    805 6kgx:O1 (2.8) BS04 PEB ? GO:0009507 ... P11393 32076272
    806 6kgx:O2 (2.8) BS01 PEB ? GO:0009507 ... E2IH77 32076272
    807 6kgx:O2 (2.8) BS02 PEB ? GO:0009507 ... E2IH77 32076272
    808 6kgx:O2 (2.8) BS03 PEB ? GO:0009507 ... E2IH77 32076272
    809 6kgx:O2 (2.8) BS04 PEB ? GO:0009507 ... E2IH77 32076272
    810 6kgx:O3 (2.8) BS01 PEB ? GO:0009507 ... E2IH77 32076272
    811 6kgx:O3 (2.8) BS02 PEB ? GO:0009507 ... E2IH77 32076272
    812 6kgx:O3 (2.8) BS03 PEB ? GO:0009507 ... E2IH77 32076272
    813 6kgx:O4 (2.8) BS01 PEB ? GO:0009507 ... P11393 32076272
    814 6kgx:O4 (2.8) BS02 PEB ? GO:0009507 ... P11393 32076272
    815 6kgx:O4 (2.8) BS03 PEB ? GO:0009507 ... P11393 32076272
    816 6kgx:O6 (2.8) BS01 PEB ? GO:0009507 ... E2IH77 32076272
    817 6kgx:O6 (2.8) BS02 PEB ? GO:0009507 ... E2IH77 32076272
    818 6kgx:O6 (2.8) BS03 PEB ? GO:0009507 ... E2IH77 32076272
    819 6kgx:O7 (2.8) BS01 PEB ? GO:0009507 ... E2IH77 32076272
    820 6kgx:O7 (2.8) BS02 PEB ? GO:0009507 ... E2IH77 32076272
    821 6kgx:O7 (2.8) BS03 PEB ? GO:0009507 ... E2IH77 32076272
    822 6kgx:O7 (2.8) BS04 PEB ? GO:0009507 ... E2IH77 32076272
    823 6kgx:O8 (2.8) BS01 PEB ? GO:0009507 ... E2IH77 32076272
    824 6kgx:O8 (2.8) BS02 PEB ? GO:0009507 ... E2IH77 32076272
    825 6kgx:O8 (2.8) BS03 PEB ? GO:0009507 ... E2IH77 32076272
    826 6kgx:O8 (2.8) BS04 PUB ? GO:0009507 ... E2IH77 32076272
    827 6kgx:O8 (2.8) BS05 PEB ? GO:0009507 ... E2IH77 32076272
    828 6kgx:O9 (2.8) BS01 PEB ? GO:0009507 ... P11393 32076272
    829 6kgx:O9 (2.8) BS02 PEB ? GO:0009507 ... P11393 32076272
    830 6kgx:O9 (2.8) BS03 PEB ? GO:0009507 ... P11393 32076272
    831 6kgx:OA (2.8) BS01 PEB ? GO:0009507 ... E2IH77 32076272
    832 6kgx:OA (2.8) BS02 PEB ? GO:0009507 ... E2IH77 32076272
    833 6kgx:OA (2.8) BS03 PEB ? GO:0009507 ... E2IH77 32076272
    834 6kgx:OA (2.8) BS04 PUB ? GO:0009507 ... E2IH77 32076272
    835 6kgx:OA (2.8) BS05 PEB ? GO:0009507 ... E2IH77 32076272
    836 6kgx:OB (2.8) BS01 PEB ? GO:0009507 ... E2IH77 32076272
    837 6kgx:OB (2.8) BS02 PEB ? GO:0009507 ... E2IH77 32076272
    838 6kgx:OB (2.8) BS03 PEB ? GO:0009507 ... E2IH77 32076272
    839 6kgx:OD (2.8) BS01 PEB ? GO:0009507 ... E2IH77 32076272
    840 6kgx:OD (2.8) BS02 PEB ? GO:0009507 ... E2IH77 32076272
    841 6kgx:OD (2.8) BS03 PEB ? GO:0009507 ... E2IH77 32076272
    842 6kgx:OD (2.8) BS04 PEB ? GO:0009507 ... E2IH77 32076272
    843 6kgx:OE (2.8) BS01 PEB ? GO:0009507 ... E2IH77 32076272
    844 6kgx:OE (2.8) BS02 PEB ? GO:0009507 ... E2IH77 32076272
    845 6kgx:OE (2.8) BS03 PEB ? GO:0009507 ... E2IH77 32076272
    846 6kgx:OE (2.8) BS04 PEB ? GO:0009507 ... E2IH77 32076272
    847 6kgx:OE (2.8) BS05 PUB ? GO:0009507 ... E2IH77 32076272
    848 6kgx:OF (2.8) BS01 PEB ? GO:0009507 ... E2IH77 32076272
    849 6kgx:OF (2.8) BS02 PEB ? GO:0009507 ... E2IH77 32076272
    850 6kgx:OF (2.8) BS03 PEB ? GO:0009507 ... E2IH77 32076272
    851 6kgx:OF (2.8) BS04 PEB ? GO:0009507 ... E2IH77 32076272
    852 6kgx:OG (2.8) BS01 PEB ? GO:0009507 ... E2IH77 32076272
    853 6kgx:OG (2.8) BS02 PEB ? GO:0009507 ... E2IH77 32076272
    854 6kgx:OG (2.8) BS03 PEB ? GO:0009507 ... E2IH77 32076272
    855 6kgx:OG (2.8) BS04 PEB ? GO:0009507 ... E2IH77 32076272
    856 6kgx:OG (2.8) BS05 PUB ? GO:0009507 ... E2IH77 32076272
    857 6kgx:OI (2.8) BS01 PEB ? GO:0009507 ... E2IH77 32076272
    858 6kgx:OI (2.8) BS02 PEB ? GO:0009507 ... E2IH77 32076272
    859 6kgx:OI (2.8) BS03 PEB ? GO:0009507 ... E2IH77 32076272
    860 6kgx:OJ (2.8) BS01 PEB ? GO:0009507 ... P11393 32076272
    861 6kgx:OJ (2.8) BS02 PEB ? GO:0009507 ... P11393 32076272
    862 6kgx:OJ (2.8) BS03 PEB ? GO:0009507 ... P11393 32076272
    863 6kgx:OJ (2.8) BS04 PEB ? GO:0009507 ... P11393 32076272
    864 6kgx:P1 (2.8) BS01 PEB ? GO:0009507 ... E2IH77 32076272
    865 6kgx:P1 (2.8) BS02 PEB ? GO:0009507 ... E2IH77 32076272
    866 6kgx:P1 (2.8) BS03 PEB ? GO:0009507 ... E2IH77 32076272
    867 6kgx:P1 (2.8) BS04 PEB ? GO:0009507 ... E2IH77 32076272
    868 6kgx:P2 (2.8) BS01 PEB ? GO:0009507 ... P11393 32076272
    869 6kgx:P2 (2.8) BS02 PEB ? GO:0009507 ... P11393 32076272
    870 6kgx:P2 (2.8) BS03 PEB ? GO:0009507 ... P11393 32076272
    871 6kgx:P3 (2.8) BS01 PEB ? GO:0009507 ... P11393 32076272
    872 6kgx:P3 (2.8) BS02 PEB ? GO:0009507 ... P11393 32076272
    873 6kgx:P3 (2.8) BS03 PEB ? GO:0009507 ... P11393 32076272
    874 6kgx:P3 (2.8) BS04 PEB ? GO:0009507 ... P11393 32076272
    875 6kgx:P4 (2.8) BS01 PEB ? GO:0009507 ... E2IH77 32076272
    876 6kgx:P4 (2.8) BS02 PEB ? GO:0009507 ... E2IH77 32076272
    877 6kgx:P4 (2.8) BS03 PEB ? GO:0009507 ... E2IH77 32076272
    878 6kgx:P6 (2.8) BS01 PEB ? GO:0009507 ... P11393 32076272
    879 6kgx:P6 (2.8) BS02 PEB ? GO:0009507 ... P11393 32076272
    880 6kgx:P6 (2.8) BS03 PEB ? GO:0009507 ... P11393 32076272
    881 6kgx:P6 (2.8) BS04 PEB ? GO:0009507 ... P11393 32076272
    882 6kgx:P7 (2.8) BS01 PEB ? GO:0009507 ... P11393 32076272
    883 6kgx:P7 (2.8) BS02 PEB ? GO:0009507 ... P11393 32076272
    884 6kgx:P7 (2.8) BS03 PEB ? GO:0009507 ... P11393 32076272
    885 6kgx:P8 (2.8) BS01 PEB ? GO:0009507 ... P11393 32076272
    886 6kgx:P8 (2.8) BS02 PEB ? GO:0009507 ... P11393 32076272
    887 6kgx:P8 (2.8) BS03 PEB ? GO:0009507 ... P11393 32076272
    888 6kgx:P8 (2.8) BS04 PEB ? GO:0009507 ... P11393 32076272
    889 6kgx:P9 (2.8) BS01 PEB ? GO:0009507 ... E2IH77 32076272
    890 6kgx:P9 (2.8) BS02 PEB ? GO:0009507 ... E2IH77 32076272
    891 6kgx:P9 (2.8) BS03 PEB ? GO:0009507 ... E2IH77 32076272
    892 6kgx:PA (2.8) BS01 PEB ? GO:0009507 ... P11393 32076272
    893 6kgx:PA (2.8) BS02 PEB ? GO:0009507 ... P11393 32076272
    894 6kgx:PA (2.8) BS03 PEB ? GO:0009507 ... P11393 32076272
    895 6kgx:PB (2.8) BS01 PEB ? GO:0009507 ... P11393 32076272
    896 6kgx:PB (2.8) BS02 PEB ? GO:0009507 ... P11393 32076272
    897 6kgx:PB (2.8) BS03 PEB ? GO:0009507 ... P11393 32076272
    898 6kgx:PB (2.8) BS04 PEB ? GO:0009507 ... P11393 32076272
    899 6kgx:PD (2.8) BS01 PEB ? GO:0009507 ... P11393 32076272
    900 6kgx:PD (2.8) BS02 PEB ? GO:0009507 ... P11393 32076272
    901 6kgx:PD (2.8) BS03 PEB ? GO:0009507 ... P11393 32076272
    902 6kgx:PE (2.8) BS01 PEB ? GO:0009507 ... P11393 32076272
    903 6kgx:PE (2.8) BS02 PEB ? GO:0009507 ... P11393 32076272
    904 6kgx:PE (2.8) BS03 PEB ? GO:0009507 ... P11393 32076272
    905 6kgx:PE (2.8) BS04 PEB ? GO:0009507 ... P11393 32076272
    906 6kgx:PF (2.8) BS01 PEB ? GO:0009507 ... P11393 32076272
    907 6kgx:PF (2.8) BS02 PEB ? GO:0009507 ... P11393 32076272
    908 6kgx:PF (2.8) BS03 PEB ? GO:0009507 ... P11393 32076272
    909 6kgx:PG (2.8) BS01 PEB ? GO:0009507 ... P11393 32076272
    910 6kgx:PG (2.8) BS02 PEB ? GO:0009507 ... P11393 32076272
    911 6kgx:PG (2.8) BS03 PEB ? GO:0009507 ... P11393 32076272
    912 6kgx:PG (2.8) BS04 PEB ? GO:0009507 ... P11393 32076272
    913 6kgx:PI (2.8) BS01 PEB ? GO:0009507 ... P11393 32076272
    914 6kgx:PI (2.8) BS02 PEB ? GO:0009507 ... P11393 32076272
    915 6kgx:PI (2.8) BS03 PEB ? GO:0009507 ... P11393 32076272
    916 6kgx:PJ (2.8) BS01 PUB ? GO:0009507 ... E2IH77 32076272
    917 6kgx:PJ (2.8) BS02 PEB ? GO:0009507 ... E2IH77 32076272
    918 6kgx:PJ (2.8) BS03 PEB ? GO:0009507 ... E2IH77 32076272
    919 6kgx:PJ (2.8) BS04 PEB ? GO:0009507 ... E2IH77 32076272
    920 6kgx:Q1 (2.8) BS01 PEB ? GO:0009507 ... P11393 32076272
    921 6kgx:Q1 (2.8) BS02 PEB ? GO:0009507 ... P11393 32076272
    922 6kgx:Q1 (2.8) BS03 PEB ? GO:0009507 ... P11393 32076272
    923 6kgx:Q1 (2.8) BS04 PEB ? GO:0009507 ... P11393 32076272
    924 6kgx:Q2 (2.8) BS01 PEB ? GO:0009507 ... E2IH77 32076272
    925 6kgx:Q2 (2.8) BS02 PEB ? GO:0009507 ... E2IH77 32076272
    926 6kgx:Q2 (2.8) BS03 PEB ? GO:0009507 ... E2IH77 32076272
    927 6kgx:Q2 (2.8) BS04 PEB ? GO:0009507 ... E2IH77 32076272
    928 6kgx:Q3 (2.8) BS01 PEB ? GO:0009507 ... E2IH77 32076272
    929 6kgx:Q3 (2.8) BS02 PEB ? GO:0009507 ... E2IH77 32076272
    930 6kgx:Q3 (2.8) BS03 PEB ? GO:0009507 ... E2IH77 32076272
    931 6kgx:Q4 (2.8) BS01 PEB ? GO:0009507 ... P11393 32076272
    932 6kgx:Q4 (2.8) BS02 PEB ? GO:0009507 ... P11393 32076272
    933 6kgx:Q4 (2.8) BS03 PEB ? GO:0009507 ... P11393 32076272
    934 6kgx:Q4 (2.8) BS04 PEB ? GO:0009507 ... P11393 32076272
    935 6kgx:Q6 (2.8) BS01 PEB ? GO:0009507 ... E2IH77 32076272
    936 6kgx:Q6 (2.8) BS02 PEB ? GO:0009507 ... E2IH77 32076272
    937 6kgx:Q6 (2.8) BS03 PEB ? GO:0009507 ... E2IH77 32076272
    938 6kgx:Q7 (2.8) BS01 PEB ? GO:0009507 ... E2IH77 32076272
    939 6kgx:Q7 (2.8) BS02 PEB ? GO:0009507 ... E2IH77 32076272
    940 6kgx:Q7 (2.8) BS03 PEB ? GO:0009507 ... E2IH77 32076272
    941 6kgx:Q8 (2.8) BS01 PEB ? GO:0009507 ... E2IH77 32076272
    942 6kgx:Q8 (2.8) BS02 PEB ? GO:0009507 ... E2IH77 32076272
    943 6kgx:Q9 (2.8) BS01 PEB ? GO:0009507 ... P11393 32076272
    944 6kgx:Q9 (2.8) BS02 PEB ? GO:0009507 ... P11393 32076272
    945 6kgx:Q9 (2.8) BS03 PEB ? GO:0009507 ... P11393 32076272
    946 6kgx:Q9 (2.8) BS04 PEB ? GO:0009507 ... P11393 32076272
    947 6kgx:QA (2.8) BS01 PEB ? GO:0009507 ... E2IH77 32076272
    948 6kgx:QA (2.8) BS02 PEB ? GO:0009507 ... E2IH77 32076272
    949 6kgx:QB (2.8) BS01 PEB ? GO:0009507 ... E2IH77 32076272
    950 6kgx:QB (2.8) BS02 PEB ? GO:0009507 ... E2IH77 32076272
    951 6kgx:QB (2.8) BS03 PEB ? GO:0009507 ... E2IH77 32076272
    952 6kgx:QD (2.8) BS01 PEB ? GO:0009507 ... E2IH77 32076272
    953 6kgx:QD (2.8) BS02 PEB ? GO:0009507 ... E2IH77 32076272
    954 6kgx:QD (2.8) BS03 PEB ? GO:0009507 ... E2IH77 32076272
    955 6kgx:QD (2.8) BS04 PEB ? GO:0009507 ... E2IH77 32076272
    956 6kgx:QE (2.8) BS01 PEB ? GO:0009507 ... E2IH77 32076272
    957 6kgx:QE (2.8) BS02 PEB ? GO:0009507 ... E2IH77 32076272
    958 6kgx:QE (2.8) BS03 PEB ? GO:0009507 ... E2IH77 32076272
    959 6kgx:QF (2.8) BS01 PEB ? GO:0009507 ... E2IH77 32076272
    960 6kgx:QF (2.8) BS02 PEB ? GO:0009507 ... E2IH77 32076272
    961 6kgx:QF (2.8) BS03 PEB ? GO:0009507 ... E2IH77 32076272
    962 6kgx:QG (2.8) BS01 PEB ? GO:0009507 ... E2IH77 32076272
    963 6kgx:QG (2.8) BS02 PEB ? GO:0009507 ... E2IH77 32076272
    964 6kgx:QG (2.8) BS03 PEB ? GO:0009507 ... E2IH77 32076272
    965 6kgx:QI (2.8) BS01 PEB ? GO:0009507 ... E2IH77 32076272
    966 6kgx:QI (2.8) BS02 PEB ? GO:0009507 ... E2IH77 32076272
    967 6kgx:QI (2.8) BS03 PEB ? GO:0009507 ... E2IH77 32076272
    968 6kgx:QI (2.8) BS04 PEB ? GO:0009507 ... E2IH77 32076272
    969 6kgx:QJ (2.8) BS01 PEB ? GO:0009507 ... P11393 32076272
    970 6kgx:QJ (2.8) BS02 PEB ? GO:0009507 ... P11393 32076272
    971 6kgx:QJ (2.8) BS03 PEB ? GO:0009507 ... P11393 32076272
    972 6kgx:QJ (2.8) BS04 PEB ? GO:0009507 ... P11393 32076272
    973 6kgx:R1 (2.8) BS01 PEB ? GO:0009507 ... E2IH77 32076272
    974 6kgx:R1 (2.8) BS02 PEB ? GO:0009507 ... E2IH77 32076272
    975 6kgx:R2 (2.8) BS01 PEB ? GO:0009507 ... P11393 32076272
    976 6kgx:R2 (2.8) BS02 PEB ? GO:0009507 ... P11393 32076272
    977 6kgx:R2 (2.8) BS03 PEB ? GO:0009507 ... P11393 32076272
    978 6kgx:R2 (2.8) BS04 PEB ? GO:0009507 ... P11393 32076272
    979 6kgx:R3 (2.8) BS01 PEB ? GO:0009507 ... P11393 32076272
    980 6kgx:R3 (2.8) BS02 PEB ? GO:0009507 ... P11393 32076272
    981 6kgx:R3 (2.8) BS03 PEB ? GO:0009507 ... P11393 32076272
    982 6kgx:R4 (2.8) BS01 PEB ? GO:0009507 ... E2IH77 32076272
    983 6kgx:R4 (2.8) BS02 PEB ? GO:0009507 ... E2IH77 32076272
    984 6kgx:R4 (2.8) BS03 PEB ? GO:0009507 ... E2IH77 32076272
    985 6kgx:R6 (2.8) BS01 PEB ? GO:0009507 ... P11393 32076272
    986 6kgx:R6 (2.8) BS02 PEB ? GO:0009507 ... P11393 32076272
    987 6kgx:R6 (2.8) BS03 PEB ? GO:0009507 ... P11393 32076272
    988 6kgx:R6 (2.8) BS04 PEB ? GO:0009507 ... P11393 32076272
    989 6kgx:R7 (2.8) BS01 PEB ? GO:0009507 ... P11393 32076272
    990 6kgx:R7 (2.8) BS02 PEB ? GO:0009507 ... P11393 32076272
    991 6kgx:R7 (2.8) BS03 PEB ? GO:0009507 ... P11393 32076272
    992 6kgx:R7 (2.8) BS04 PEB ? GO:0009507 ... P11393 32076272
    993 6kgx:R8 (2.8) BS01 PEB ? GO:0009507 ... P11393 32076272
    994 6kgx:R8 (2.8) BS02 PEB ? GO:0009507 ... P11393 32076272
    995 6kgx:R8 (2.8) BS03 PEB ? GO:0009507 ... P11393 32076272
    996 6kgx:R8 (2.8) BS04 PEB ? GO:0009507 ... P11393 32076272
    997 6kgx:R9 (2.8) BS01 PEB ? GO:0009507 ... E2IH77 32076272
    998 6kgx:R9 (2.8) BS02 PEB ? GO:0009507 ... E2IH77 32076272
    999 6kgx:R9 (2.8) BS03 PEB ? GO:0009507 ... E2IH77 32076272
    1000 6kgx:RA (2.8) BS01 PEB ? GO:0009507 ... P11393 32076272
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023)(download the PDF file).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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