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●TM-score ●TM-align ●US-align ●MM-align ●RNA-align ●NW-align ●LS-align ●EDTSurf ●MVP ●MVP-Fit ●SPICKER ●HAAD ●PSSpred ●3DRobot ●MR-REX ●I-TASSER-MR ●SVMSEQ ●NeBcon ●ResPRE ●TripletRes ●DeepPotential ●WDL-RF ●ATPbind ●DockRMSD ●DeepMSA ●FASPR ●EM-Refiner ●GPU-I-TASSER

●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
Download all results in tab-seperated text for 903398 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    902601 9fjm:B (3.65) BS01 peptide N/A N/A P60709 N/A
    902602 9fjm:B (3.65) BS02 peptide N/A N/A P60709 N/A
    902603 9fjm:B (3.65) BS03 ADP N/A N/A P60709 N/A
    902604 9fjm:C (3.65) BS01 peptide N/A N/A P60709 N/A
    902605 9fjm:C (3.65) BS02 ADP N/A N/A P60709 N/A
    902606 9fjm:D (3.65) BS01 peptide N/A N/A P60709 N/A
    902607 9fjm:D (3.65) BS02 peptide N/A N/A P60709 N/A
    902608 9fjm:D (3.65) BS03 ADP N/A N/A P60709 N/A
    902609 9fjm:D (3.65) BS04 MG N/A N/A P60709 N/A
    902610 9fjo:A (3.05) BS01 ADP N/A N/A P68135 N/A
    902611 9fjo:B (3.05) BS01 ADP N/A N/A P68135 N/A
    902612 9fjo:C (3.05) BS01 ADP N/A N/A P68135 N/A
    902613 9fjo:D (3.05) BS01 ADP N/A N/A P68135 N/A
    902614 9fju:A (3.84) BS01 peptide N/A N/A P60712 N/A
    902615 9fju:A (3.84) BS02 ADP N/A N/A P60712 N/A
    902616 9fju:B (3.84) BS01 peptide N/A N/A P60712 N/A
    902617 9fju:B (3.84) BS02 ADP N/A N/A P60712 N/A
    902618 9fju:C (3.84) BS01 peptide N/A N/A P60712 N/A
    902619 9fju:C (3.84) BS02 ADP N/A N/A P60712 N/A
    902620 9fju:D (3.84) BS01 peptide N/A N/A P60712 N/A
    902621 9fju:D (3.84) BS02 ADP N/A N/A P60712 N/A
    902622 9fju:E (3.84) BS01 MG N/A N/A P00639 N/A
    902623 9fju:E (3.84) BS02 MG N/A N/A P00639 N/A
    902624 9fjy:A (3.79) BS01 peptide N/A N/A P60712 N/A
    902625 9fjy:A (3.79) BS02 ADP N/A N/A P60712 N/A
    902626 9fjy:B (3.79) BS01 peptide N/A N/A P60712 N/A
    902627 9fjy:B (3.79) BS02 ADP N/A N/A P60712 N/A
    902628 9fjy:C (3.79) BS01 peptide N/A N/A P60712 N/A
    902629 9fjy:C (3.79) BS02 peptide N/A N/A P60712 N/A
    902630 9fjy:C (3.79) BS03 ADP N/A N/A P60712 N/A
    902631 9fjy:D (3.79) BS01 ADP N/A N/A P60712 N/A
    902632 9fjy:E (3.79) BS01 MG N/A N/A P00639 N/A
    902633 9fjy:E (3.79) BS02 MG N/A N/A P00639 N/A
    902634 9fjy:F (3.79) BS01 MG N/A N/A P00639 N/A
    902635 9fjy:F (3.79) BS02 MG N/A N/A P00639 N/A
    902636 9flb:A (2.5) BS01 A1IDB N/A N/A Q8TF76 N/A
    902637 9flc:A (2.18) BS01 A1IDA N/A N/A Q8TF76 N/A
    902638 9flo:A (2.9) BS01 A1IDC N/A N/A Q8TF76 N/A
    902639 9flq:A (1.85) BS01 A1IDD N/A N/A Q8TF76 N/A
    902640 9flt:A (2.4) BS01 A1IDF N/A N/A Q8TF76 N/A
    902641 9fmd:1 (3.3) BS01 rna N/A GO:0003014 ... Q9H875 38925148
    902642 9fmd:1 (3.3) BS02 rna N/A GO:0003014 ... Q9H875 38925148
    902643 9fmd:32 (3.3) BS01 rna N/A GO:0003723 ... Q9Y421 38925148
    902644 9fmd:7 (3.3) BS01 ATP N/A GO:0000184 ... P38919 38925148
    902645 9fmd:A (3.3) BS01 rna N/A GO:0000244 ... Q6P2Q9 38925148
    902646 9fmd:A (3.3) BS02 rna N/A GO:0000244 ... Q6P2Q9 38925148
    902647 9fmd:A (3.3) BS03 rna N/A GO:0000244 ... Q6P2Q9 38925148
    902648 9fmd:A (3.3) BS04 rna N/A GO:0000244 ... Q6P2Q9 38925148
    902649 9fmd:A (3.3) BS05 rna N/A GO:0000244 ... Q6P2Q9 38925148
    902650 9fmd:A (3.3) BS06 IHP N/A GO:0000244 ... Q6P2Q9 38925148
    902651 9fmd:C (3.3) BS01 rna N/A GO:0000398 ... Q15029 38925148
    902652 9fmd:C (3.3) BS02 GTP N/A GO:0000398 ... Q15029 38925148
    902653 9fmd:E (3.3) BS01 rna N/A GO:0000375 ... Q96DI7 38925148
    902654 9fmd:L (3.3) BS01 rna N/A GO:0000077 ... Q99459 38925148
    902655 9fmd:L (3.3) BS02 rna N/A GO:0000077 ... Q99459 38925148
    902656 9fmd:L (3.3) BS03 rna N/A GO:0000077 ... Q99459 38925148
    902657 9fmd:M (3.3) BS01 rna N/A GO:0000398 ... O95926 38925148
    902658 9fmd:M (3.3) BS02 rna N/A GO:0000398 ... O95926 38925148
    902659 9fmd:N (3.3) BS01 rna N/A GO:0000398 ... P41223 38925148
    902660 9fmd:N (3.3) BS02 rna N/A GO:0000398 ... P41223 38925148
    902661 9fmd:N (3.3) BS03 ZN N/A GO:0000398 ... P41223 38925148
    902662 9fmd:N (3.3) BS04 ZN N/A GO:0000398 ... P41223 38925148
    902663 9fmd:N (3.3) BS05 ZN N/A GO:0000398 ... P41223 38925148
    902664 9fmd:O (3.3) BS01 rna N/A GO:0000398 ... Q9NW64 38925148
    902665 9fmd:O (3.3) BS02 rna N/A GO:0000398 ... Q9NW64 38925148
    902666 9fmd:O (3.3) BS03 ZN N/A GO:0000398 ... Q9NW64 38925148
    902667 9fmd:O (3.3) BS04 ZN N/A GO:0000398 ... Q9NW64 38925148
    902668 9fmd:O (3.3) BS05 ZN N/A GO:0000398 ... Q9NW64 38925148
    902669 9fmd:P (3.3) BS01 rna N/A GO:0000398 ... Q9P013 38925148
    902670 9fmd:P (3.3) BS02 rna N/A GO:0000398 ... Q9P013 38925148
    902671 9fmd:P (3.3) BS03 rna N/A GO:0000398 ... Q9P013 38925148
    902672 9fmd:R (3.3) BS01 rna N/A GO:0000122 ... Q13573 38925148
    902673 9fmd:R (3.3) BS02 rna N/A GO:0000122 ... Q13573 38925148
    902674 9fmd:SR (3.3) BS01 rna N/A GO:0000398 ... Q9UQ35 38925148
    902675 9fmd:SR (3.3) BS02 rna N/A GO:0000398 ... Q9UQ35 38925148
    902676 9fmd:T (3.3) BS01 rna N/A GO:0000398 ... O43660 38925148
    902677 9fmd:U (3.3) BS01 IHP N/A GO:0000375 ... O95391 38925148
    902678 9fmd:W (3.3) BS01 rna N/A GO:0000398 ... O60508 38925148
    902679 9fmd:W (3.3) BS02 rna N/A GO:0000398 ... O60508 38925148
    902680 9fmd:a (3.3) BS01 rna N/A GO:0000243 ... P62318 38925148
    902681 9fmd:b (3.3) BS01 rna N/A GO:0000387 ... P14678 38925148
    902682 9fmd:c (3.3) BS01 rna N/A GO:0000243 ... P62314 38925148
    902683 9fmd:d (3.3) BS01 rna N/A GO:0000245 ... P62316 38925148
    902684 9fmd:e (3.3) BS01 rna N/A GO:0000245 ... P62304 38925148
    902685 9fmd:f (3.3) BS01 rna N/A GO:0000387 ... P62306 38925148
    902686 9fmd:g (3.3) BS01 rna N/A GO:0000245 ... P62308 38925148
    902687 9fmd:h (3.3) BS01 rna N/A GO:0000243 ... P62318 38925148
    902688 9fmd:i (3.3) BS01 rna N/A GO:0000387 ... P14678 38925148
    902689 9fmd:j (3.3) BS01 rna N/A GO:0000243 ... P62314 38925148
    902690 9fmd:k (3.3) BS01 rna N/A GO:0000245 ... P62316 38925148
    902691 9fmd:l (3.3) BS01 rna N/A GO:0000245 ... P62304 38925148
    902692 9fmd:m (3.3) BS01 rna N/A GO:0000387 ... P62306 38925148
    902693 9fmd:n (3.3) BS01 rna N/A GO:0000245 ... P62308 38925148
    902694 9fmd:o (3.3) BS01 rna N/A GO:0000398 ... P09661 38925148
    902695 9fmd:p (3.3) BS01 rna N/A GO:0000398 ... P08579 38925148
    902696 9fmm:A (2.5) BS01 A1IDX N/A GO:0001618 ... Q9BYF1 39066808
    902697 9fmm:A (2.5) BS02 ZN N/A GO:0001618 ... Q9BYF1 39066808
    902698 9fmm:B (2.5) BS01 A1IDX N/A GO:0001618 ... Q9BYF1 39066808
    902699 9fmm:B (2.5) BS02 ZN N/A GO:0001618 ... Q9BYF1 39066808
    902700 9foy:A (2.8) BS01 dna N/A N/A P9WG45
    P9WG47    		 N/A
    902701 9foy:A (2.8) BS02 dna N/A N/A P9WG45
    P9WG47    		 N/A
    902702 9foy:A (2.8) BS03 dna N/A N/A P9WG45
    P9WG47    		 N/A
    902703 9foy:A (2.8) BS04 A1ID8 N/A N/A P9WG45
    P9WG47    		 N/A
    902704 9foy:A (2.8) BS05 A1ID9 N/A N/A P9WG45
    P9WG47    		 N/A
    902705 9foy:B (2.8) BS01 dna N/A N/A P9WG45
    P9WG47    		 N/A
    902706 9foy:B (2.8) BS02 dna N/A N/A P9WG45
    P9WG47    		 N/A
    902707 9foy:B (2.8) BS03 dna N/A N/A P9WG45
    P9WG47    		 N/A
    902708 9foy:B (2.8) BS04 A1ID8 N/A N/A P9WG45
    P9WG47    		 N/A
    902709 9foy:B (2.8) BS05 A1ID9 N/A N/A P9WG45
    P9WG47    		 N/A
    902710 9fp6:A (2.9) BS01 ATP N/A GO:0006952 ... A0A0S3ANR1 N/A
    902711 9fp6:B (2.9) BS01 ATP N/A GO:0006952 ... A0A0S3ANR1 N/A
    902712 9fp6:C (2.9) BS01 ATP N/A GO:0006952 ... A0A0S3ANR1 N/A
    902713 9fp6:D (2.9) BS01 ATP N/A GO:0006952 ... A0A0S3ANR1 N/A
    902714 9fp6:E (2.9) BS01 ATP N/A GO:0006952 ... A0A0S3ANR1 N/A
    902715 9fp6:F (2.9) BS01 ATP N/A GO:0006952 ... A0A0S3ANR1 N/A
    902716 9fpz:A (2.69) BS01 rna N/A GO:0003723 ... P50579 N/A
    902717 9fpz:A (2.69) BS02 CO N/A GO:0003723 ... P50579 N/A
    902718 9fpz:A (2.69) BS03 CO N/A GO:0003723 ... P50579 N/A
    902719 9fpz:B (2.69) BS01 rna N/A GO:0001525 ... Q9BXJ9 N/A
    902720 9fpz:B (2.69) BS02 IHP N/A GO:0001525 ... Q9BXJ9 N/A
    902721 9fpz:LC (2.69) BS01 rna N/A GO:0002181 ... P36578 N/A
    902722 9fpz:LE (2.69) BS01 rna N/A GO:0000027 ... Q02878 N/A
    902723 9fpz:LR (2.69) BS01 rna N/A GO:0002181 ... P84098 N/A
    902724 9fpz:LX (2.69) BS01 rna N/A GO:0000027 ... P62750 N/A
    902725 9fpz:LX (2.69) BS02 rna N/A GO:0000027 ... P62750 N/A
    902726 9fpz:LY (2.69) BS01 rna N/A GO:0002181 ... P61254 N/A
    902727 9fpz:LY (2.69) BS02 rna N/A GO:0002181 ... P61254 N/A
    902728 9fpz:Lh (2.69) BS01 rna N/A GO:0000463 ... P42766 N/A
    902729 9fpz:Lk (2.69) BS01 rna N/A GO:0001501 ... P63173 N/A
    902730 9fpz:Lr (2.69) BS01 rna N/A GO:0002181 ... P46779 N/A
    902731 9fq0:B (4.67) BS01 rna N/A GO:0005737 ... A0A0B4J1W3 N/A
    902732 9fq0:B (4.67) BS02 IHP N/A GO:0005737 ... A0A0B4J1W3 N/A
    902733 9fq0:D (4.67) BS01 rna N/A GO:0001701 ... P20290 N/A
    902734 9fq0:LC (4.67) BS01 rna N/A GO:0002181 ... P36578 N/A
    902735 9fq0:LE (4.67) BS01 rna N/A GO:0000027 ... Q02878 N/A
    902736 9fq0:LR (4.67) BS01 rna N/A GO:0002181 ... P84098 N/A
    902737 9fq0:LU (4.67) BS01 rna N/A GO:0002181 ... P35268 N/A
    902738 9fq0:LX (4.67) BS01 rna N/A GO:0000027 ... P62750 N/A
    902739 9fq0:LX (4.67) BS02 rna N/A GO:0000027 ... P62750 N/A
    902740 9fq0:LY (4.67) BS01 rna N/A N/A Q6IBH6 N/A
    902741 9fq0:LY (4.67) BS02 rna N/A N/A Q6IBH6 N/A
    902742 9fq0:Lh (4.67) BS01 rna N/A GO:0000463 ... P42766 N/A
    902743 9fq0:Lk (4.67) BS01 rna N/A GO:0001501 ... P63173 N/A
    902744 9fq0:Lr (4.67) BS01 rna N/A GO:0002181 ... P46779 N/A
    902745 9fq9:A (1.25) BS01 A1IF1 N/A N/A P0DTC1 39146284
    902746 9fqa:A (1.47) BS01 A1IEY N/A N/A P0DTC1 39146284
    902747 9fqa:A (1.47) BS02 MG N/A N/A P0DTC1 39146284
    902748 9fqh:A (1.786) BS01 A1IEW N/A N/A Q13191 39132828
    902749 9fqh:A (1.786) BS02 ZN N/A N/A Q13191 39132828
    902750 9fqh:A (1.786) BS03 ZN N/A N/A Q13191 39132828
    902751 9fqi:A (1.954) BS01 A1IEV N/A N/A Q13191 39132828
    902752 9fqi:A (1.954) BS02 ZN N/A N/A Q13191 39132828
    902753 9fqi:A (1.954) BS03 ZN N/A N/A Q13191 39132828
    902754 9fqj:A (1.563) BS01 A1IE5 N/A N/A Q13191 39132828
    902755 9fqj:A (1.563) BS02 ZN N/A N/A Q13191 39132828
    902756 9fqj:A (1.563) BS03 ZN N/A N/A Q13191 39132828
    902757 9fqj:B (1.563) BS01 A1IE5 N/A N/A Q13191 39132828
    902758 9fqj:B (1.563) BS02 ZN N/A N/A Q13191 39132828
    902759 9fqj:B (1.563) BS03 ZN N/A N/A Q13191 39132828
    902760 9fr2:A (1.6) BS01 A1IE9 N/A N/A P24941 N/A
    902761 9fst:G (2.75) BS01 MG N/A GO:0000502 ... P21243 N/A
    902762 9fst:I (2.75) BS01 MG N/A GO:0000502 ... P25451 N/A
    902763 9fst:K (2.75) BS01 A1IF8 N/A N/A P30656 N/A
    902764 9fst:K (2.75) BS02 MG N/A N/A P30656 N/A
    902765 9fst:N (2.75) BS01 A1IF8 N/A N/A P28065
    P38624    		 N/A
    902766 9fst:N (2.75) BS02 MG N/A N/A P28065
    P38624    		 N/A
    902767 9fst:W (2.75) BS01 MG N/A GO:0000502 ... P25451 N/A
    902768 9fst:Y (2.75) BS01 A1IF8 N/A N/A P30656 N/A
    902769 9fst:Y (2.75) BS02 MG N/A N/A P30656 N/A
    902770 9fst:Z (2.75) BS01 MG N/A GO:0000502 ... P23724 N/A
    902771 9fst:b (2.75) BS01 A1IF8 N/A N/A P28065
    P38624    		 N/A
    902772 9fsv:G (2.75) BS01 MG N/A GO:0000502 ... P21243 N/A
    902773 9fsv:H (2.75) BS01 A1IFL N/A N/A P25043
    P40306    		 N/A
    902774 9fsv:I (2.75) BS01 MG N/A GO:0000502 ... P25451 N/A
    902775 9fsv:K (2.75) BS01 MG N/A N/A P30656 N/A
    902776 9fsv:K (2.75) BS02 A1IFL N/A N/A P30656 N/A
    902777 9fsv:N (2.75) BS01 MG N/A GO:0000502 ... P38624 N/A
    902778 9fsv:V (2.75) BS01 MG N/A N/A P25043
    P40306    		 N/A
    902779 9fsv:V (2.75) BS02 A1IFL N/A N/A P25043
    P40306    		 N/A
    902780 9fsv:W (2.75) BS01 MG N/A GO:0000502 ... P25451 N/A
    902781 9fsv:Y (2.75) BS01 MG N/A N/A P30656 N/A
    902782 9fsv:Y (2.75) BS02 A1IFL N/A N/A P30656 N/A
    902783 9fsv:Z (2.75) BS01 MG N/A GO:0000502 ... P23724 N/A
    902784 9ft0:G (2.75) BS01 MG N/A GO:0000502 ... P21243 N/A
    902785 9ft0:H (2.75) BS01 A1IFL N/A N/A P25043 N/A
    902786 9ft0:I (2.75) BS01 MG N/A GO:0000502 ... P25451 N/A
    902787 9ft0:K (2.75) BS01 MG N/A N/A P30656 N/A
    902788 9ft0:K (2.75) BS02 A1IFL N/A N/A P30656 N/A
    902789 9ft0:N (2.75) BS01 MG N/A GO:0000502 ... P38624 N/A
    902790 9ft0:V (2.75) BS01 MG N/A N/A P25043 N/A
    902791 9ft0:V (2.75) BS02 A1IFL N/A N/A P25043 N/A
    902792 9ft0:Y (2.75) BS01 MG N/A N/A P30656 N/A
    902793 9ft0:Y (2.75) BS02 A1IFL N/A N/A P30656 N/A
    902794 9ft1:G (2.6) BS01 MG N/A GO:0000502 ... P21243 N/A
    902795 9ft1:H (2.6) BS01 A1IFK N/A N/A P25043 N/A
    902796 9ft1:I (2.6) BS01 A1IFK N/A GO:0000502 ... P25451 N/A
    902797 9ft1:K (2.6) BS01 MG N/A N/A P30656 N/A
    902798 9ft1:K (2.6) BS02 A1IFK N/A N/A P30656 N/A
    902799 9ft1:L (2.6) BS01 A1IFK N/A GO:0000502 ... P23724 N/A
    902800 9ft1:V (2.6) BS01 A1IFK N/A N/A P25043 N/A
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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