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●TM-score ●TM-align ●US-align ●MM-align ●RNA-align ●NW-align ●LS-align ●EDTSurf ●MVP ●MVP-Fit ●SPICKER ●HAAD ●PSSpred ●3DRobot ●MR-REX ●I-TASSER-MR ●SVMSEQ ●NeBcon ●ResPRE ●TripletRes ●DeepPotential ●WDL-RF ●ATPbind ●DockRMSD ●DeepMSA ●FASPR ●EM-Refiner ●GPU-I-TASSER

●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
Download all results in tab-seperated text for 903398 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    902001 9f1d:Bi (3.26) BS01 rna N/A N/A G1TTQ5 39169182
    902002 9f1d:Bj (3.26) BS01 rna N/A N/A U3KPD5 39169182
    902003 9f1d:Bj (3.26) BS02 rna N/A N/A U3KPD5 39169182
    902004 9f1d:Bj (3.26) BS03 ZN N/A N/A U3KPD5 39169182
    902005 9f1d:Bk (3.26) BS01 rna N/A N/A G1U001 39169182
    902006 9f1d:Bl (3.26) BS01 rna N/A N/A G1TTN1 39169182
    902007 9f1d:Bl (3.26) BS02 rna N/A N/A G1TTN1 39169182
    902008 9f1d:Bm (3.26) BS01 rna N/A N/A P0DXC2 39169182
    902009 9f1d:Bm (3.26) BS02 ZN N/A N/A P0DXC2 39169182
    902010 9f1d:Bo (3.26) BS01 rna N/A N/A A0AAA9WX15 39169182
    902011 9f1d:Bo (3.26) BS02 ZN N/A N/A A0AAA9WX15 39169182
    902012 9f1d:Bp (3.26) BS01 rna N/A N/A G1SY53 39169182
    902013 9f1d:Bp (3.26) BS02 ZN N/A N/A G1SY53 39169182
    902014 9f1d:Br (3.26) BS01 rna N/A N/A G1U7L1 39169182
    902015 9f1d:Bs (3.26) BS01 rna N/A N/A G1SPK4 39169182
    902016 9f1d:Bt (3.26) BS01 rna N/A N/A G1SMR7 39169182
    902017 9f1d:Cu (3.26) BS01 rna N/A N/A P20290 39169182
    902018 9f1d:DB (3.26) BS01 rna N/A N/A Q9BXJ9 39169182
    902019 9f1d:DB (3.26) BS02 IHP N/A N/A Q9BXJ9 39169182
    902020 9f1d:EA (3.26) BS01 rna N/A N/A P53582 39169182
    902021 9f1i:H (1.38) BS01 peptide N/A N/A N/A 39020051
    902022 9f1i:H (1.38) BS02 FUC N/A N/A N/A 39020051
    902023 9f1i:H (1.38) BS03 PFX N/A N/A N/A 39020051
    902024 9f1i:I (1.38) BS01 peptide N/A N/A N/A 39020051
    902025 9f1i:I (1.38) BS02 FUC N/A N/A N/A 39020051
    902026 9f1i:I (1.38) BS03 PFX N/A N/A N/A 39020051
    902027 9f1i:L (1.38) BS01 peptide N/A N/A N/A 39020051
    902028 9f1i:M (1.38) BS01 peptide N/A N/A N/A 39020051
    902029 9f1j:A (1.13003) BS01 A1H84 N/A N/A O60885 N/A
    902030 9f1k:A (1.61) BS01 A1H81 N/A N/A O60885 N/A
    902031 9f1l:A (1.30001) BS01 A1H83 N/A N/A O60885 N/A
    902032 9f1m:A (1.90001) BS01 A1H80 N/A N/A O60885 N/A
    902033 9f1m:B (1.90001) BS01 A1H80 N/A N/A O60885 N/A
    902034 9f1m:C (1.90001) BS01 A1H80 N/A N/A O60885 N/A
    902035 9f1m:D (1.90001) BS01 A1H80 N/A N/A O60885 N/A
    902036 9f1n:A (1.71) BS01 A1H9H N/A N/A O60885 N/A
    902037 9f1n:B (1.71) BS01 A1H9H N/A N/A O60885 N/A
    902038 9f1n:C (1.71) BS01 A1H9H N/A N/A O60885 N/A
    902039 9f1n:D (1.71) BS01 A1H9H N/A N/A O60885 N/A
    902040 9f1t:A (3.0) BS01 CU N/A N/A Q04HQ8 39126090
    902041 9f1t:A (3.0) BS02 CU N/A N/A Q04HQ8 39126090
    902042 9f1t:A (3.0) BS03 CU N/A N/A Q04HQ8 39126090
    902043 9f1t:A (3.0) BS04 CU N/A N/A Q04HQ8 39126090
    902044 9f1t:B (3.0) BS01 CU N/A N/A Q04HQ8 39126090
    902045 9f1t:B (3.0) BS02 CU N/A N/A Q04HQ8 39126090
    902046 9f1t:B (3.0) BS03 CU N/A N/A Q04HQ8 39126090
    902047 9f1t:B (3.0) BS04 CU N/A N/A Q04HQ8 39126090
    902048 9f2k:A (2.48) BS01 NAD N/A N/A G0SDP4 39145930
    902049 9f2r:A (1.959) BS01 rna N/A N/A H6QM92 N/A
    902050 9f2r:A (1.959) BS02 rna N/A N/A H6QM92 N/A
    902051 9f2r:B (1.959) BS01 rna N/A N/A H6QM91 N/A
    902052 9f2r:B (1.959) BS02 rna N/A N/A H6QM91 N/A
    902053 9f2r:B (1.959) BS03 MG N/A N/A H6QM91 N/A
    902054 9f2r:C (1.959) BS01 rna N/A N/A H6QM90 N/A
    902055 9f2r:C (1.959) BS02 MGT N/A N/A H6QM90 N/A
    902056 9f33:R (3.05) BS01 A1H9N N/A N/A P35462
    P42212    		 39237617
    902057 9f34:R (3.09) BS01 A1H9N N/A N/A P35462
    P42212    		 39237617
    902058 9f37:A (1.905) BS01 rna N/A N/A H6QM92 N/A
    902059 9f37:A (1.905) BS02 rna N/A N/A H6QM92 N/A
    902060 9f37:B (1.905) BS01 rna N/A N/A H6QM91 N/A
    902061 9f37:B (1.905) BS02 rna N/A N/A H6QM91 N/A
    902062 9f37:B (1.905) BS03 CTP N/A N/A H6QM91 N/A
    902063 9f37:B (1.905) BS04 GTP N/A N/A H6QM91 N/A
    902064 9f37:B (1.905) BS05 MG N/A N/A H6QM91 N/A
    902065 9f37:B (1.905) BS06 MG N/A N/A H6QM91 N/A
    902066 9f37:C (1.905) BS01 rna N/A N/A H6QM90 N/A
    902067 9f37:C (1.905) BS02 MGT N/A N/A H6QM90 N/A
    902068 9f3w:A (2.7) BS01 A1H9I 4.3.99.4 GO:0003824 ... A0A486V7R5 N/A
    902069 9f3w:B (2.7) BS01 A1H9I 4.3.99.4 GO:0003824 ... A0A486V7R5 N/A
    902070 9f3w:C (2.7) BS01 A1H9I 4.3.99.4 GO:0003824 ... A0A486V7R5 N/A
    902071 9f3w:D (2.7) BS01 A1H9I 4.3.99.4 GO:0003824 ... A0A486V7R5 N/A
    902072 9f3w:E (2.7) BS01 A1H9I 4.3.99.4 GO:0003824 ... A0A486V7R5 N/A
    902073 9f3w:F (2.7) BS01 A1H9I 4.3.99.4 GO:0003824 ... A0A486V7R5 N/A
    902074 9f3w:G (2.7) BS01 A1H9I 4.3.99.4 GO:0003824 ... A0A486V7R5 N/A
    902075 9f3w:H (2.7) BS01 A1H9I 4.3.99.4 GO:0003824 ... A0A486V7R5 N/A
    902076 9f3x:A (2.7) BS01 A1H9K 4.3.99.4 GO:0003824 ... A0A486V7R5 N/A
    902077 9f3x:B (2.7) BS01 A1H9K 4.3.99.4 GO:0003824 ... A0A486V7R5 N/A
    902078 9f3x:C (2.7) BS01 A1H9K 4.3.99.4 GO:0003824 ... A0A486V7R5 N/A
    902079 9f3x:D (2.7) BS01 A1H9K 4.3.99.4 GO:0003824 ... A0A486V7R5 N/A
    902080 9f3x:E (2.7) BS01 A1H9K 4.3.99.4 GO:0003824 ... A0A486V7R5 N/A
    902081 9f3x:F (2.7) BS01 A1H9K 4.3.99.4 GO:0003824 ... A0A486V7R5 N/A
    902082 9f3x:G (2.7) BS01 A1H9K 4.3.99.4 GO:0003824 ... A0A486V7R5 N/A
    902083 9f3x:H (2.7) BS01 A1H9K 4.3.99.4 GO:0003824 ... A0A486V7R5 N/A
    902084 9f3y:A (2.9) BS01 A1H9L 4.3.99.4 GO:0003824 ... A0A486V7R5 N/A
    902085 9f3y:B (2.9) BS01 A1H9L 4.3.99.4 GO:0003824 ... A0A486V7R5 N/A
    902086 9f3y:C (2.9) BS01 A1H9L 4.3.99.4 GO:0003824 ... A0A486V7R5 N/A
    902087 9f3y:D (2.9) BS01 A1H9L 4.3.99.4 GO:0003824 ... A0A486V7R5 N/A
    902088 9f3y:E (2.9) BS01 A1H9L 4.3.99.4 GO:0003824 ... A0A486V7R5 N/A
    902089 9f3y:F (2.9) BS01 A1H9L 4.3.99.4 GO:0003824 ... A0A486V7R5 N/A
    902090 9f3y:G (2.9) BS01 A1H9L 4.3.99.4 GO:0003824 ... A0A486V7R5 N/A
    902091 9f3y:H (2.9) BS01 A1H9L 4.3.99.4 GO:0003824 ... A0A486V7R5 N/A
    902092 9f3z:A (3.5) BS01 CU N/A N/A Q04HQ8 39126090
    902093 9f3z:A (3.5) BS02 CU N/A N/A Q04HQ8 39126090
    902094 9f3z:A (3.5) BS03 CU N/A N/A Q04HQ8 39126090
    902095 9f3z:A (3.5) BS04 CU N/A N/A Q04HQ8 39126090
    902096 9f3z:B (3.5) BS01 CU N/A N/A Q04HQ8 39126090
    902097 9f3z:B (3.5) BS02 CU N/A N/A Q04HQ8 39126090
    902098 9f3z:B (3.5) BS03 CU N/A N/A Q04HQ8 39126090
    902099 9f3z:B (3.5) BS04 CU N/A N/A Q04HQ8 39126090
    902100 9f40:A (2.44) BS01 MAN ? N/A Q12200 N/A
    902101 9f40:A (2.44) BS02 ERG ? N/A Q12200 N/A
    902102 9f40:A (2.44) BS03 ZN ? N/A Q12200 N/A
    902103 9f40:A (2.44) BS04 ZN ? N/A Q12200 N/A
    902104 9f40:A (2.44) BS05 ZN ? N/A Q12200 N/A
    902105 9f40:B (2.44) BS01 ZN ? N/A Q12200 N/A
    902106 9f40:B (2.44) BS02 ERG ? N/A Q12200 N/A
    902107 9f40:B (2.44) BS03 ZN ? N/A Q12200 N/A
    902108 9f40:B (2.44) BS04 ZN ? N/A Q12200 N/A
    902109 9f40:B (2.44) BS05 ZN ? N/A Q12200 N/A
    902110 9f40:B (2.44) BS06 ZN ? N/A Q12200 N/A
    902111 9f40:C (2.44) BS01 ERG ? N/A Q12200 N/A
    902112 9f40:C (2.44) BS02 ZN ? N/A Q12200 N/A
    902113 9f40:C (2.44) BS03 ZN ? N/A Q12200 N/A
    902114 9f40:C (2.44) BS04 ZN ? N/A Q12200 N/A
    902115 9f40:C (2.44) BS05 ZN ? N/A Q12200 N/A
    902116 9f40:C (2.44) BS06 ZN ? N/A Q12200 N/A
    902117 9f40:D (2.44) BS01 MAN ? N/A Q12200 N/A
    902118 9f40:D (2.44) BS02 ZN ? N/A Q12200 N/A
    902119 9f40:D (2.44) BS03 ERG ? N/A Q12200 N/A
    902120 9f40:D (2.44) BS04 ZN ? N/A Q12200 N/A
    902121 9f40:D (2.44) BS05 ZN ? N/A Q12200 N/A
    902122 9f41:A (2.64) BS01 CLR ? N/A Q12200 N/A
    902123 9f41:A (2.64) BS02 ZN ? N/A Q12200 N/A
    902124 9f41:A (2.64) BS03 ZN ? N/A Q12200 N/A
    902125 9f41:B (2.64) BS01 CLR ? N/A Q12200 N/A
    902126 9f41:B (2.64) BS02 ZN ? N/A Q12200 N/A
    902127 9f41:B (2.64) BS03 ZN ? N/A Q12200 N/A
    902128 9f41:B (2.64) BS04 ZN ? N/A Q12200 N/A
    902129 9f41:B (2.64) BS05 ZN ? N/A Q12200 N/A
    902130 9f41:B (2.64) BS06 ZN ? N/A Q12200 N/A
    902131 9f41:C (2.64) BS01 MAN ? N/A Q12200 N/A
    902132 9f41:C (2.64) BS02 CLR ? N/A Q12200 N/A
    902133 9f41:C (2.64) BS03 ZN ? N/A Q12200 N/A
    902134 9f41:C (2.64) BS04 ZN ? N/A Q12200 N/A
    902135 9f41:C (2.64) BS05 ZN ? N/A Q12200 N/A
    902136 9f41:C (2.64) BS06 ZN ? N/A Q12200 N/A
    902137 9f41:C (2.64) BS07 ZN ? N/A Q12200 N/A
    902138 9f41:D (2.64) BS01 MAN ? N/A Q12200 N/A
    902139 9f41:D (2.64) BS02 ZN ? N/A Q12200 N/A
    902140 9f41:D (2.64) BS03 CLR ? N/A Q12200 N/A
    902141 9f41:D (2.64) BS04 ZN ? N/A Q12200 N/A
    902142 9f41:D (2.64) BS05 ZN ? N/A Q12200 N/A
    902143 9f42:E (3.27) BS01 peptide N/A N/A Q8N122 39141345
    902144 9f43:E (3.49) BS01 peptide N/A N/A Q8N122 39141345
    902145 9f44:A (3.68) BS01 IHP N/A N/A P42345 39141345
    902146 9f44:B (3.68) BS01 IHP N/A N/A P42345 39141345
    902147 9f44:E (3.68) BS01 peptide N/A N/A Q8N122 39141345
    902148 9f44:F (3.68) BS01 peptide N/A N/A Q8N122 39141345
    902149 9f45:A (3.74) BS01 IHP N/A N/A P42345 39141345
    902150 9f45:B (3.74) BS01 IHP N/A N/A P42345 39141345
    902151 9f45:E (3.74) BS01 peptide N/A N/A Q8N122 39141345
    902152 9f45:F (3.74) BS01 peptide N/A N/A Q8N122 39141345
    902153 9f4d:A (1.5) BS01 JH1 ? GO:0003676 ... P09651 N/A
    902154 9f4e:A (1.57) BS01 VZM ? GO:0003676 ... P09651 N/A
    902155 9f4f:A (1.4) BS01 A1H9T ? GO:0003676 ... P09651 N/A
    902156 9f4g:A (1.4) BS01 SZE ? GO:0003676 ... P09651 N/A
    902157 9f4h:A (1.4) BS01 NUY ? GO:0003676 ... P09651 N/A
    902158 9f4h:A (1.4) BS02 NUY ? GO:0003676 ... P09651 N/A
    902159 9f4j:A (1.4) BS01 NWP ? GO:0003676 ... P09651 N/A
    902160 9f4k:A (1.8) BS01 A1H9R ? GO:0003676 ... P09651 N/A
    902161 9f4l:A (1.4) BS01 WGP ? GO:0003676 ... P09651 N/A
    902162 9f4m:A (1.39) BS01 A1H97 ? GO:0003676 ... P09651 N/A
    902163 9f4n:A (1.4) BS01 O3J ? GO:0003676 ... P09651 N/A
    902164 9f4o:A (1.4) BS01 A1H95 ? GO:0003676 ... P09651 N/A
    902165 9f4p:A (1.4) BS01 Q49 ? GO:0003676 ... P09651 N/A
    902166 9f4q:A (1.4) BS01 A1H9S ? GO:0003676 ... P09651 N/A
    902167 9f4r:A (1.59) BS01 K3J ? GO:0003676 ... P09651 N/A
    902168 9f4s:A (1.4) BS01 JGA ? GO:0003676 ... P09651 N/A
    902169 9f4t:A (1.42) BS01 WZY ? GO:0003676 ... P09651 N/A
    902170 9f4u:A (1.4) BS01 LXA ? GO:0003676 ... P09651 N/A
    902171 9f4v:A (1.4) BS01 UQJ ? GO:0003676 ... P09651 N/A
    902172 9f4w:A (1.6) BS01 O0M ? GO:0003676 ... P09651 N/A
    902173 9f4x:A (1.6) BS01 HWH ? GO:0003676 ... P09651 N/A
    902174 9f4y:A (1.4) BS01 W0S ? GO:0003676 ... P09651 N/A
    902175 9f4z:A (1.6) BS01 9KS ? GO:0003676 ... P09651 N/A
    902176 9f50:A (1.5) BS01 K2G ? GO:0003676 ... P09651 N/A
    902177 9f51:A (1.5) BS01 A1H9V ? GO:0003676 ... P09651 N/A
    902178 9f52:A (1.5) BS01 A1H9W ? GO:0003676 ... P09651 N/A
    902179 9f53:A (1.8) BS01 K3A ? GO:0003676 ... P09651 N/A
    902180 9f54:A (1.7) BS01 K3Y ? GO:0003676 ... P09651 N/A
    902181 9f55:A (1.55) BS01 A1H9U ? GO:0003676 ... P09651 N/A
    902182 9f55:A (1.55) BS02 A1H9U ? GO:0003676 ... P09651 N/A
    902183 9f5c:A (1.45) BS01 LJA ? GO:0003676 ... P09651 N/A
    902184 9f5d:A (1.6) BS01 A1H9X ? GO:0003676 ... P09651 N/A
    902185 9f5e:A (1.45) BS01 JFP ? GO:0003676 ... P09651 N/A
    902186 9f5f:A (1.4) BS01 W0J ? GO:0003676 ... P09651 N/A
    902187 9f5g:A (1.8) BS01 Z9I ? GO:0003676 ... P09651 N/A
    902188 9f5k:A (1.7) BS01 ONQ ? GO:0003676 ... P09651 N/A
    902189 9f5q:A (1.95) BS01 ACO N/A N/A Q38AU6 N/A
    902190 9f5q:B (1.95) BS01 ACO N/A N/A Q38AU6 N/A
    902191 9f6c:A (2.33) BS01 MG N/A N/A Q9BE39 39196032
    902192 9f6c:A (2.33) BS02 6I6 N/A N/A Q9BE39 39196032
    902193 9f6c:A (2.33) BS03 ADP N/A N/A Q9BE39 39196032
    902194 9f6c:B (2.33) BS01 MG N/A N/A Q9BE39 39196032
    902195 9f6c:B (2.33) BS02 6I6 N/A N/A Q9BE39 39196032
    902196 9f6c:B (2.33) BS03 ADP N/A N/A Q9BE39 39196032
    902197 9f6d:A (3.6) BS01 dna N/A N/A Q07864 39112807
    902198 9f6d:A (3.6) BS02 dna N/A N/A Q07864 39112807
    902199 9f6d:A (3.6) BS03 SF4 N/A N/A Q07864 39112807
    902200 9f6d:A (3.6) BS04 DDS N/A N/A Q07864 39112807
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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