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BioLiP
Download all results in tab-seperated text for 903398 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    900001 9c3t:A (2.37) BS02 dna N/A N/A A0A8I1DKW0 39244607
    900002 9c3t:A (2.37) BS03 dna N/A N/A A0A8I1DKW0 39244607
    900003 9c3t:A (2.37) BS04 dna N/A N/A A0A8I1DKW0 39244607
    900004 9c3t:A (2.37) BS05 SFG N/A N/A A0A8I1DKW0 39244607
    900005 9c3t:B (2.37) BS01 dna N/A N/A A0A8I1DKW0 39244607
    900006 9c3t:B (2.37) BS02 dna N/A N/A A0A8I1DKW0 39244607
    900007 9c3t:B (2.37) BS03 dna N/A N/A A0A8I1DKW0 39244607
    900008 9c3t:B (2.37) BS04 dna N/A N/A A0A8I1DKW0 39244607
    900009 9c3t:B (2.37) BS05 SFG N/A N/A A0A8I1DKW0 39244607
    900010 9c3t:C (2.37) BS01 dna N/A N/A A0A8I1DKW0 39244607
    900011 9c3t:C (2.37) BS02 dna N/A N/A A0A8I1DKW0 39244607
    900012 9c3t:C (2.37) BS03 dna N/A N/A A0A8I1DKW0 39244607
    900013 9c3t:C (2.37) BS04 SFG N/A N/A A0A8I1DKW0 39244607
    900014 9c3t:D (2.37) BS01 dna N/A N/A A0A8I1DKW0 39244607
    900015 9c3t:D (2.37) BS02 dna N/A N/A A0A8I1DKW0 39244607
    900016 9c3t:D (2.37) BS03 dna N/A N/A A0A8I1DKW0 39244607
    900017 9c3t:D (2.37) BS04 SFG N/A N/A A0A8I1DKW0 39244607
    900018 9c3u:A (2.77) BS01 dna N/A N/A A0A8I1DKW0 39244607
    900019 9c3u:A (2.77) BS02 dna N/A N/A A0A8I1DKW0 39244607
    900020 9c3u:A (2.77) BS03 dna N/A N/A A0A8I1DKW0 39244607
    900021 9c3u:A (2.77) BS04 FRU N/A N/A A0A8I1DKW0 39244607
    900022 9c3u:A (2.77) BS05 SFG N/A N/A A0A8I1DKW0 39244607
    900023 9c3u:B (2.77) BS01 dna N/A N/A A0A8I1DKW0 39244607
    900024 9c3u:B (2.77) BS02 dna N/A N/A A0A8I1DKW0 39244607
    900025 9c3u:B (2.77) BS03 dna N/A N/A A0A8I1DKW0 39244607
    900026 9c3u:B (2.77) BS04 dna N/A N/A A0A8I1DKW0 39244607
    900027 9c3u:B (2.77) BS05 FRU N/A N/A A0A8I1DKW0 39244607
    900028 9c3u:B (2.77) BS06 SFG N/A N/A A0A8I1DKW0 39244607
    900029 9c3u:C (2.77) BS01 dna N/A N/A A0A8I1DKW0 39244607
    900030 9c3u:C (2.77) BS02 dna N/A N/A A0A8I1DKW0 39244607
    900031 9c3u:C (2.77) BS03 dna N/A N/A A0A8I1DKW0 39244607
    900032 9c3u:C (2.77) BS04 dna N/A N/A A0A8I1DKW0 39244607
    900033 9c3u:C (2.77) BS05 SFG N/A N/A A0A8I1DKW0 39244607
    900034 9c3u:D (2.77) BS01 dna N/A N/A A0A8I1DKW0 39244607
    900035 9c3u:D (2.77) BS02 dna N/A N/A A0A8I1DKW0 39244607
    900036 9c3u:D (2.77) BS03 dna N/A N/A A0A8I1DKW0 39244607
    900037 9c3u:D (2.77) BS04 dna N/A N/A A0A8I1DKW0 39244607
    900038 9c3u:D (2.77) BS05 SFG N/A N/A A0A8I1DKW0 39244607
    900039 9c4c:E (3.09) BS01 dna N/A N/A P54512 N/A
    900040 9c4c:E (3.09) BS02 MN N/A N/A P54512 N/A
    900041 9c4c:E (3.09) BS03 MN N/A N/A P54512 N/A
    900042 9c4c:F (3.09) BS01 dna N/A N/A P54512 N/A
    900043 9c4c:F (3.09) BS02 dna N/A N/A P54512 N/A
    900044 9c4c:F (3.09) BS03 MN N/A N/A P54512 N/A
    900045 9c4c:F (3.09) BS04 MN N/A N/A P54512 N/A
    900046 9c4c:G (3.09) BS01 dna N/A N/A P54512 N/A
    900047 9c4c:G (3.09) BS02 dna N/A N/A P54512 N/A
    900048 9c4c:G (3.09) BS03 MN N/A N/A P54512 N/A
    900049 9c4c:G (3.09) BS04 MN N/A N/A P54512 N/A
    900050 9c4c:H (3.09) BS01 dna N/A N/A P54512 N/A
    900051 9c4c:H (3.09) BS02 MN N/A N/A P54512 N/A
    900052 9c4c:H (3.09) BS03 MN N/A N/A P54512 N/A
    900053 9c4d:C (4.17) BS01 MN N/A N/A P54512 N/A
    900054 9c4d:C (4.17) BS02 MN N/A N/A P54512 N/A
    900055 9c4d:D (4.17) BS01 dna N/A N/A P54512 N/A
    900056 9c4d:D (4.17) BS02 MN N/A N/A P54512 N/A
    900057 9c4d:D (4.17) BS03 MN N/A N/A P54512 N/A
    900058 9c4d:E (4.17) BS01 dna N/A N/A P54512 N/A
    900059 9c4d:E (4.17) BS02 MN N/A N/A P54512 N/A
    900060 9c4d:E (4.17) BS03 MN N/A N/A P54512 N/A
    900061 9c4d:F (4.17) BS01 dna N/A N/A P54512 N/A
    900062 9c4d:F (4.17) BS02 dna N/A N/A P54512 N/A
    900063 9c4d:F (4.17) BS03 MN N/A N/A P54512 N/A
    900064 9c4d:F (4.17) BS04 MN N/A N/A P54512 N/A
    900065 9c4d:G (4.17) BS01 dna N/A N/A P54512 N/A
    900066 9c4d:G (4.17) BS02 MN N/A N/A P54512 N/A
    900067 9c4d:G (4.17) BS03 MN N/A N/A P54512 N/A
    900068 9c4d:H (4.17) BS01 dna N/A N/A P54512 N/A
    900069 9c4d:H (4.17) BS02 MN N/A N/A P54512 N/A
    900070 9c4d:H (4.17) BS03 MN N/A N/A P54512 N/A
    900071 9c4d:I (4.17) BS01 dna N/A N/A P54512 N/A
    900072 9c4d:I (4.17) BS02 MN N/A N/A P54512 N/A
    900073 9c4d:I (4.17) BS03 MN N/A N/A P54512 N/A
    900074 9c4d:J (4.17) BS01 dna N/A N/A P54512 N/A
    900075 9c4d:J (4.17) BS02 MN N/A N/A P54512 N/A
    900076 9c4d:J (4.17) BS03 MN N/A N/A P54512 N/A
    900077 9c4g:0 (2.53) BS01 rna N/A N/A A0A2C6LJM0 39122144
    900078 9c4g:0 (2.53) BS02 ZN N/A N/A A0A2C6LJM0 39122144
    900079 9c4g:1 (2.53) BS01 rna N/A N/A A0A2B7IDI8 39122144
    900080 9c4g:2 (2.53) BS01 rna N/A N/A Q6A7V2 39122144
    900081 9c4g:3 (2.53) BS01 rna N/A N/A A0A2B7JN22 39122144
    900082 9c4g:4 (2.53) BS01 ZN N/A N/A A0A2B7JUW7 39122144
    900083 9c4g:c (2.53) BS01 rna N/A N/A A0A2B7JMV5 39122144
    900084 9c4g:d (2.53) BS01 rna N/A N/A A0A1G9KW65 39122144
    900085 9c4g:e (2.53) BS01 rna N/A N/A A0A2B7I5M5 39122144
    900086 9c4g:f (2.53) BS01 rna N/A N/A A0A3E2DDM1 39122144
    900087 9c4g:f (2.53) BS02 rna N/A N/A A0A3E2DDM1 39122144
    900088 9c4g:g (2.53) BS01 rna N/A N/A A0A2B7I5S3 39122144
    900089 9c4g:i (2.53) BS01 rna N/A N/A A0A2B7I6I7 39122144
    900090 9c4g:j (2.53) BS01 rna N/A N/A A0A2B7JMZ8 39122144
    900091 9c4g:k (2.53) BS01 rna N/A N/A A0A2B7IUA0 39122144
    900092 9c4g:l (2.53) BS01 rna N/A N/A A0A2B7I5M8 39122144
    900093 9c4g:l (2.53) BS02 rna N/A N/A A0A2B7I5M8 39122144
    900094 9c4g:m (2.53) BS01 rna N/A N/A A0A8B2VJI7 39122144
    900095 9c4g:n (2.53) BS01 rna N/A N/A A0A2B7JN02 39122144
    900096 9c4g:n (2.53) BS02 rna N/A N/A A0A2B7JN02 39122144
    900097 9c4g:o (2.53) BS01 rna N/A N/A A0A2C6LKT3 39122144
    900098 9c4g:p (2.53) BS01 rna N/A N/A A0A2B7I6V3 39122144
    900099 9c4g:q (2.53) BS01 rna N/A N/A Q6A9I3 39122144
    900100 9c4g:r (2.53) BS01 rna N/A N/A A0A2B7ITY5 39122144
    900101 9c4g:s (2.53) BS01 rna N/A N/A A0A2C6LEQ5 39122144
    900102 9c4g:t (2.53) BS01 rna N/A N/A Q6A6N7 39122144
    900103 9c4g:u (2.53) BS01 rna N/A N/A A0A2B7IYF8 39122144
    900104 9c4g:u (2.53) BS02 rna N/A N/A A0A2B7IYF8 39122144
    900105 9c4g:v (2.53) BS01 rna N/A N/A A0A2B7IGT1 39122144
    900106 9c4g:v (2.53) BS02 rna N/A N/A A0A2B7IGT1 39122144
    900107 9c4g:w (2.53) BS01 rna N/A N/A A0A2B7I7B7 39122144
    900108 9c4g:w (2.53) BS02 ZN N/A N/A A0A2B7I7B7 39122144
    900109 9c4g:x (2.53) BS01 rna N/A N/A A0A2B7JB12 39122144
    900110 9c4g:y (2.53) BS01 rna N/A N/A A0A2B7I5Y4 39122144
    900111 9c4g:y (2.53) BS02 rna N/A N/A A0A2B7I5Y4 39122144
    900112 9c4g:z (2.53) BS01 rna N/A N/A A0A2B7I771 39122144
    900113 9c4g:z (2.53) BS02 ZN N/A N/A A0A2B7I771 39122144
    900114 9c4i:A (1.3) BS01 MMA N/A GO:0005537 ... C0HK20 N/A
    900115 9c4i:A (1.3) BS02 MAN N/A GO:0005537 ... C0HK20 N/A
    900116 9c4i:A (1.3) BS03 MN N/A GO:0005537 ... C0HK20 N/A
    900117 9c4i:A (1.3) BS04 CA N/A GO:0005537 ... C0HK20 N/A
    900118 9c4i:B (1.3) BS01 MMA N/A GO:0005537 ... C0HK20 N/A
    900119 9c4i:B (1.3) BS02 MAN N/A GO:0005537 ... C0HK20 N/A
    900120 9c4i:B (1.3) BS03 CA N/A GO:0005537 ... C0HK20 N/A
    900121 9c4i:B (1.3) BS04 MN N/A GO:0005537 ... C0HK20 N/A
    900122 9c4m:A (2.48) BS01 IMP N/A N/A P31002 39235234
    900123 9c4m:A (2.48) BS02 A1AUF N/A N/A P31002 39235234
    900124 9c4m:A (2.48) BS03 A1AUF N/A N/A P31002 39235234
    900125 9c4m:B (2.48) BS01 A1AUF N/A N/A P31002 39235234
    900126 9c4m:B (2.48) BS02 IMP N/A N/A P31002 39235234
    900127 9c4m:B (2.48) BS03 A1AUF N/A N/A P31002 39235234
    900128 9c4m:C (2.48) BS01 A1AUF N/A N/A P31002 39235234
    900129 9c4m:C (2.48) BS02 IMP N/A N/A P31002 39235234
    900130 9c4m:C (2.48) BS03 A1AUF N/A N/A P31002 39235234
    900131 9c4m:D (2.48) BS01 A1AUF N/A N/A P31002 39235234
    900132 9c4m:D (2.48) BS02 IMP N/A N/A P31002 39235234
    900133 9c4m:D (2.48) BS03 A1AUF N/A N/A P31002 39235234
    900134 9c4m:E (2.48) BS01 IMP N/A N/A P31002 39235234
    900135 9c4m:E (2.48) BS02 A1AUF N/A N/A P31002 39235234
    900136 9c4m:E (2.48) BS03 A1AUF N/A N/A P31002 39235234
    900137 9c4m:F (2.48) BS01 A1AUF N/A N/A P31002 39235234
    900138 9c4m:F (2.48) BS02 IMP N/A N/A P31002 39235234
    900139 9c4m:F (2.48) BS03 A1AUF N/A N/A P31002 39235234
    900140 9c4m:G (2.48) BS01 A1AUF N/A N/A P31002 39235234
    900141 9c4m:G (2.48) BS02 IMP N/A N/A P31002 39235234
    900142 9c4m:G (2.48) BS03 A1AUF N/A N/A P31002 39235234
    900143 9c4m:H (2.48) BS01 A1AUF N/A N/A P31002 39235234
    900144 9c4m:H (2.48) BS02 IMP N/A N/A P31002 39235234
    900145 9c4m:H (2.48) BS03 A1AUF N/A N/A P31002 39235234
    900146 9c4o:A (1.99) BS01 CA N/A GO:0009279 ... P76115 N/A
    900147 9c4o:A (1.99) BS02 PQQ N/A GO:0009279 ... P76115 N/A
    900148 9c55:A (2.36) BS01 527 N/A N/A P17706 39177701
    900149 9c56:A (2.43) BS01 FRJ N/A N/A P17706 39177701
    900150 9c57:A (2.75) BS01 AGS N/A N/A Q9Y265 39088653
    900151 9c57:B (2.75) BS01 AGS N/A N/A Q9Y230 39088653
    900152 9c57:C (2.75) BS01 AGS N/A N/A Q9Y265 39088653
    900153 9c57:D (2.75) BS01 AGS N/A N/A Q9Y230 39088653
    900154 9c57:E (2.75) BS01 AGS N/A N/A Q9Y265 39088653
    900155 9c57:F (2.75) BS01 AGS N/A N/A Q9Y230 39088653
    900156 9c57:G (2.75) BS01 AGS N/A N/A Q96L91 39088653
    900157 9c57:L (2.75) BS01 ATP N/A N/A O96019 39088653
    900158 9c5e:A (-1.00) BS01 ZN N/A N/A Q7KTX7 39078678
    900159 9c5e:A (-1.00) BS02 ZN N/A N/A Q7KTX7 39078678
    900160 9c5e:A (-1.00) BS03 4LJ N/A N/A Q7KTX7 39078678
    900161 9c5q:A (3.1) BS01 dna N/A N/A O75417 38895274
    900162 9c5q:C (3.1) BS01 dna N/A N/A O75417 38895274
    900163 9c61:A (2.6) BS01 A1AUU N/A N/A Q17RV3 N/A
    900164 9c61:B (2.6) BS01 A1AUU N/A N/A Q17RV3 N/A
    900165 9c62:A (5.28) BS01 ADP N/A N/A Q9Y265 39088653
    900166 9c62:B (5.28) BS01 ADP N/A N/A Q9Y230 39088653
    900167 9c62:C (5.28) BS01 ADP N/A N/A Q9Y265 39088653
    900168 9c62:D (5.28) BS01 ADP N/A N/A Q9Y230 39088653
    900169 9c62:E (5.28) BS01 ADP N/A N/A Q9Y265 39088653
    900170 9c62:F (5.28) BS01 ADP N/A N/A Q9Y230 39088653
    900171 9c66:A (1.4) BS01 peptide N/A N/A Q8N8S7 39138154
    900172 9c6n:J (3.29) BS01 ATP N/A N/A P60709 39088653
    900173 9c6n:L (3.29) BS01 ATP N/A N/A O96019 39088653
    900174 9c6p:A (1.663) BS01 A1AUT N/A N/A P00811 N/A
    900175 9c6p:B (1.663) BS01 A1AUT N/A N/A P00811 N/A
    900176 9c6q:C (3.18) BS01 dna N/A N/A B9TSM3 39173632
    900177 9c81:A (1.7) BS01 A1AU0 N/A N/A P00811 N/A
    900178 9c81:B (1.7) BS01 A1AU0 N/A N/A P00811 N/A
    900179 9c83:A (2.9) BS01 A1AUZ N/A N/A P00811 N/A
    900180 9c83:B (2.9) BS01 A1AUZ N/A N/A P00811 N/A
    900181 9c84:A (1.7) BS01 A1AU1 N/A N/A P00811 N/A
    900182 9c84:B (1.7) BS01 A1AU1 N/A N/A P00811 N/A
    900183 9c8j:A (1.55) BS01 A1AU5 N/A N/A P00811 N/A
    900184 9c8j:B (1.55) BS01 A1AU5 N/A N/A P00811 N/A
    900185 9c8s:A (2.37) BS01 WTA N/A GO:0003987 ... J9VFT1 N/A
    900186 9c8s:B (2.37) BS01 WTA N/A GO:0003987 ... J9VFT1 N/A
    900187 9c8s:C (2.37) BS01 WTA N/A GO:0003987 ... J9VFT1 N/A
    900188 9c8u:A (3.1) BS01 ZN N/A N/A Q15910 N/A
    900189 9c8u:A (3.1) BS02 ZN N/A N/A Q15910 N/A
    900190 9c8u:A (3.1) BS03 ZN N/A N/A Q15910 N/A
    900191 9c8u:A (3.1) BS04 ZN N/A N/A Q15910 N/A
    900192 9c8u:A (3.1) BS05 ZN N/A N/A Q15910 N/A
    900193 9c8u:A (3.1) BS06 ZN N/A N/A Q15910 N/A
    900194 9c8u:A (3.1) BS07 ZN N/A N/A Q15910 N/A
    900195 9c8v:A (3.39) BS01 ZN N/A N/A P49642 N/A
    900196 9c8v:B (3.39) BS01 SF4 N/A N/A P49643 N/A
    900197 9c8v:C (3.39) BS01 ZN N/A N/A P09884 N/A
    900198 9c8v:C (3.39) BS02 ZN N/A N/A P09884 N/A
    900199 9c9m:A (2.01) BS01 dna N/A N/A P12497 39066328
    900200 9c9m:A (2.01) BS02 dna N/A N/A P12497 39066328
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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