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BioLiP
Download all results in tab-seperated text for 903398 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    899801 9bow:A (1.8) BS01 SER N/A N/A Q5SI56 39148791
    899802 9bow:A (1.8) BS02 KOU N/A N/A Q5SI56 39148791
    899803 9bow:A (1.8) BS03 FFO N/A N/A Q5SI56 39148791
    899804 9bow:B (1.8) BS01 SER N/A N/A Q5SI56 39148791
    899805 9bow:B (1.8) BS02 KOU N/A N/A Q5SI56 39148791
    899806 9bow:B (1.8) BS03 FFO N/A N/A Q5SI56 39148791
    899807 9box:A (2.1) BS01 A1AQW N/A N/A P34897 39148791
    899808 9box:A (2.1) BS02 FFO N/A N/A P34897 39148791
    899809 9box:A (2.1) BS03 A1AQW N/A N/A P34897 39148791
    899810 9box:A (2.1) BS04 FFO N/A N/A P34897 39148791
    899811 9box:B (2.1) BS01 A1AQW N/A N/A P34897 39148791
    899812 9box:B (2.1) BS02 FFO N/A N/A P34897 39148791
    899813 9box:B (2.1) BS03 A1AQW N/A N/A P34897 39148791
    899814 9box:B (2.1) BS04 FFO N/A N/A P34897 39148791
    899815 9box:C (2.1) BS01 A1AQW N/A N/A P34897 39148791
    899816 9box:C (2.1) BS02 FFO N/A N/A P34897 39148791
    899817 9box:C (2.1) BS03 A1AQW N/A N/A P34897 39148791
    899818 9box:C (2.1) BS04 FFO N/A N/A P34897 39148791
    899819 9box:D (2.1) BS01 A1AQW N/A N/A P34897 39148791
    899820 9box:D (2.1) BS02 FFO N/A N/A P34897 39148791
    899821 9box:D (2.1) BS03 A1AQW N/A N/A P34897 39148791
    899822 9box:D (2.1) BS04 FFO N/A N/A P34897 39148791
    899823 9bp6:A (3.1) BS01 GTP 3.6.5.- GO:0000226 ... P68363 N/A
    899824 9bp6:B (3.1) BS01 G2P ? GO:0000226 ... P07437 N/A
    899825 9bp6:I (3.1) BS01 GTP 3.6.5.- GO:0000226 ... P68363 N/A
    899826 9bp6:Q (3.1) BS01 G2P ? GO:0000226 ... P07437 N/A
    899827 9bp9:A (3.21) BS01 WCN N/A N/A O75417 39143110
    899828 9bp9:C (3.21) BS01 WCN N/A N/A O75417 39143110
    899829 9bpa:A (3.21) BS01 WCN N/A N/A O75417 39143110
    899830 9bpa:C (3.21) BS01 WCN N/A N/A O75417 39143110
    899831 9bpa:E (3.21) BS01 WCN N/A N/A O75417 39143110
    899832 9bpa:G (3.21) BS01 WCN N/A N/A O75417 39143110
    899833 9bpe:A (2.0) BS01 FFO N/A N/A Q5SI56 39148791
    899834 9bpe:B (2.0) BS01 FFO N/A N/A Q5SI56 39148791
    899835 9bpf:A (2.0) BS01 YDL N/A N/A P0DTD1 39211604
    899836 9bpf:B (2.0) BS01 YDL N/A N/A P0DTD1 39211604
    899837 9bqe:A (1.98) BS01 TV3 N/A N/A P03372 N/A
    899838 9bqe:B (1.98) BS01 TV3 N/A N/A P03372 N/A
    899839 9bqj:D (3.3) BS01 A1AQ2 N/A N/A P42866 39220695
    899840 9br7:A (2.08) BS01 A1ATL N/A N/A Q9HAC7 38915184
    899841 9br7:C (2.08) BS01 A1ATL N/A N/A Q9HAC7 38915184
    899842 9br7:D (2.08) BS01 A1ATL N/A N/A Q9HAC7 38915184
    899843 9br7:D (2.08) BS02 A1ATL N/A N/A Q9HAC7 38915184
    899844 9brd:A (3.5) BS01 ADP N/A GO:0000221 ... D4A133 38900912
    899845 9brd:a (3.5) BS01 BMA N/A GO:0000220 ... P25286 38900912
    899846 9brd:a (3.5) BS02 MAN N/A GO:0000220 ... P25286 38900912
    899847 9brd:a (3.5) BS03 GLC N/A GO:0000220 ... P25286 38900912
    899848 9brd:a (3.5) BS04 GLC N/A GO:0000220 ... P25286 38900912
    899849 9brd:a (3.5) BS05 WJP N/A GO:0000220 ... P25286 38900912
    899850 9brd:a (3.5) BS06 LP3 N/A GO:0000220 ... P25286 38900912
    899851 9brd:f (3.5) BS01 LP3 N/A N/A A0A8J8YMT9 38900912
    899852 9brd:h (3.5) BS01 CLR N/A GO:0000220 ... P63081 38900912
    899853 9brd:i (3.5) BS01 CLR N/A GO:0000220 ... P63081 38900912
    899854 9brd:i (3.5) BS02 CLR N/A GO:0000220 ... P63081 38900912
    899855 9brd:i (3.5) BS03 CLR N/A GO:0000220 ... P63081 38900912
    899856 9brd:j (3.5) BS01 CLR N/A GO:0000220 ... P63081 38900912
    899857 9brd:j (3.5) BS02 CLR N/A GO:0000220 ... P63081 38900912
    899858 9brd:k (3.5) BS01 CLR N/A GO:0000220 ... P63081 38900912
    899859 9brd:k (3.5) BS02 CLR N/A GO:0000220 ... P63081 38900912
    899860 9brd:l (3.5) BS01 CLR N/A GO:0000220 ... P63081 38900912
    899861 9brd:l (3.5) BS02 CLR N/A GO:0000220 ... P63081 38900912
    899862 9brd:l (3.5) BS03 CLR N/A GO:0000220 ... P63081 38900912
    899863 9brd:m (3.5) BS01 CLR N/A GO:0000220 ... P63081 38900912
    899864 9brd:m (3.5) BS02 CLR N/A GO:0000220 ... P63081 38900912
    899865 9brd:m (3.5) BS03 CLR N/A GO:0000220 ... P63081 38900912
    899866 9brd:n (3.5) BS01 CLR N/A GO:0000220 ... P63081 38900912
    899867 9brd:n (3.5) BS02 CLR N/A GO:0000220 ... P63081 38900912
    899868 9brd:n (3.5) BS03 CLR N/A GO:0000220 ... P63081 38900912
    899869 9brd:n (3.5) BS04 CLR N/A GO:0000220 ... P63081 38900912
    899870 9brd:o (3.5) BS01 CLR N/A GO:0000220 ... P63081 38900912
    899871 9brd:o (3.5) BS02 CLR N/A GO:0000220 ... P63081 38900912
    899872 9brd:o (3.5) BS03 CLR N/A GO:0000220 ... P63081 38900912
    899873 9brd:o (3.5) BS04 CLR N/A GO:0000220 ... P63081 38900912
    899874 9brv:A (2.6) BS01 A1ASK N/A N/A P0DTD1 39140055
    899875 9brv:A (2.6) BS02 ZN N/A N/A P0DTD1 39140055
    899876 9brv:A (2.6) BS03 A1ASK N/A N/A P0DTD1 39140055
    899877 9brv:B (2.6) BS01 A1ASK N/A N/A P0DTD1 39140055
    899878 9brv:B (2.6) BS02 A1ASK N/A N/A P0DTD1 39140055
    899879 9brv:B (2.6) BS03 ZN N/A N/A P0DTD1 39140055
    899880 9brw:A (2.5) BS01 A1ARL N/A N/A P0DTC1 39140055
    899881 9brw:A (2.5) BS02 ZN N/A N/A P0DTC1 39140055
    899882 9brw:B (2.5) BS01 A1ARL N/A N/A P0DTC1 39140055
    899883 9brw:B (2.5) BS02 ZN N/A N/A P0DTC1 39140055
    899884 9brw:C (2.5) BS01 A1ARL N/A N/A P0DTC1 39140055
    899885 9brw:C (2.5) BS02 ZN N/A N/A P0DTC1 39140055
    899886 9brw:D (2.5) BS01 A1ARL N/A N/A P0DTC1 39140055
    899887 9brw:D (2.5) BS02 ZN N/A N/A P0DTC1 39140055
    899888 9brx:AA (1.8) BS01 A1ASL N/A N/A P0DTC1 39140055
    899889 9brx:AA (1.8) BS02 ZN N/A N/A P0DTC1 39140055
    899890 9bry:c (3.6) BS01 BMA N/A N/A Q9R1Q9 38838737
    899891 9bs3:A (2.69) BS01 dna N/A N/A P18858 39159820
    899892 9bs3:A (2.69) BS02 dna N/A N/A P18858 39159820
    899893 9bs3:A (2.69) BS03 dna N/A N/A P18858 39159820
    899894 9bs3:A (2.69) BS04 AMP N/A N/A P18858 39159820
    899895 9bs3:E (2.69) BS01 dna N/A N/A P18858 39159820
    899896 9bs3:E (2.69) BS02 dna N/A N/A P18858 39159820
    899897 9bs3:E (2.69) BS03 dna N/A N/A P18858 39159820
    899898 9bs3:E (2.69) BS04 AMP N/A N/A P18858 39159820
    899899 9bs4:A (2.4) BS01 dna N/A N/A P18858 39159820
    899900 9bs4:A (2.4) BS02 dna N/A N/A P18858 39159820
    899901 9bs4:A (2.4) BS03 dna N/A N/A P18858 39159820
    899902 9bs4:A (2.4) BS04 AMP N/A N/A P18858 39159820
    899903 9bs4:E (2.4) BS01 dna N/A N/A P18858 39159820
    899904 9bs4:E (2.4) BS02 dna N/A N/A P18858 39159820
    899905 9bs4:E (2.4) BS03 dna N/A N/A P18858 39159820
    899906 9bs4:E (2.4) BS04 AMP N/A N/A P18858 39159820
    899907 9bts:A (1.85) BS01 HEM N/A N/A A0A1E3M9R5 39107474
    899908 9bts:B (1.85) BS01 HEM N/A N/A A0A1E3M9R5 39107474
    899909 9bts:C (1.85) BS01 HEM N/A N/A A0A1E3M9R5 39107474
    899910 9bts:D (1.85) BS01 HEM N/A N/A A0A1E3M9R5 39107474
    899911 9bts:E (1.85) BS01 HEM N/A N/A A0A1E3M9R5 39107474
    899912 9bts:F (1.85) BS01 HEM N/A N/A A0A1E3M9R5 39107474
    899913 9bts:G (1.85) BS01 HEM N/A N/A A0A1E3M9R5 39107474
    899914 9bts:H (1.85) BS01 HEM N/A N/A A0A1E3M9R5 39107474
    899915 9bts:a (1.85) BS01 HEM N/A N/A T2HRY3 39107474
    899916 9bts:b (1.85) BS01 HEM N/A N/A T2HRY3 39107474
    899917 9bts:c (1.85) BS01 HEM N/A N/A T2HRY3 39107474
    899918 9bts:d (1.85) BS01 HEM N/A N/A T2HRY3 39107474
    899919 9bts:e (1.85) BS01 HEM N/A N/A T2HRY3 39107474
    899920 9bts:f (1.85) BS01 HEM N/A N/A T2HRY3 39107474
    899921 9bts:g (1.85) BS01 HEM N/A N/A T2HRY3 39107474
    899922 9bts:h (1.85) BS01 HEM N/A N/A T2HRY3 39107474
    899923 9bu1:A (1.75) BS01 A1ASN N/A N/A P03372 N/A
    899924 9bu1:B (1.75) BS01 A1ASN N/A N/A P03372 N/A
    899925 9buj:A (2.19) BS01 CA N/A N/A A0A833EL34 38935515
    899926 9bul:A (2.1) BS01 FE2 N/A GO:0003677 ... Q9X1T8 N/A
    899927 9bul:A (2.1) BS02 NIO N/A GO:0003677 ... Q9X1T8 N/A
    899928 9bul:A (2.1) BS03 PRO N/A GO:0003677 ... Q9X1T8 N/A
    899929 9bvd:C (2.48) BS01 dna N/A N/A Q05066 39168182
    899930 9bvd:C (2.48) BS02 dna N/A N/A Q05066 39168182
    899931 9bvd:F (2.48) BS01 dna N/A N/A Q05066 39168182
    899932 9bvd:F (2.48) BS02 dna N/A N/A Q05066 39168182
    899933 9bvd:I (2.48) BS01 dna N/A N/A Q05066 39168182
    899934 9bvd:I (2.48) BS02 dna N/A N/A Q05066 39168182
    899935 9bwt:A (2.5) BS01 ATP N/A N/A J3QSS1 39143061
    899936 9bwt:A (2.5) BS02 HCZ N/A N/A J3QSS1 39143061
    899937 9bwt:B (2.5) BS01 ATP N/A N/A J3QSS1 39143061
    899938 9bzq:A (1.47) BS01 NXL 3.5.2.6 N/A A0A0H3LUA9 N/A
    899939 9bzr:A (1.4) BS01 TEM 3.5.2.6 N/A A0A0H3LUA9 N/A
    899940 9c0b:H (3.26) BS01 A1AS6 N/A N/A Q548M1 39041457
    899941 9c0b:I (3.26) BS01 A1AS6 N/A N/A Q548M1 39041457
    899942 9c0b:J (3.26) BS01 A1AS6 N/A N/A Q548M1 39041457
    899943 9c0b:K (3.26) BS01 A1AS6 N/A N/A Q548M1 39041457
    899944 9c0b:L (3.26) BS01 A1AS6 N/A N/A Q548M1 39041457
    899945 9c0b:M (3.26) BS01 A1AS6 N/A N/A Q548M1 39041457
    899946 9c0b:N (3.26) BS01 A1AS6 N/A N/A Q548M1 39041457
    899947 9c0b:O (3.26) BS01 A1AS6 N/A N/A Q548M1 39041457
    899948 9c0b:P (3.26) BS01 A1AS6 N/A N/A Q548M1 39041457
    899949 9c0b:Q (3.26) BS01 A1AS6 N/A N/A Q548M1 39041457
    899950 9c0b:R (3.26) BS01 A1AS6 N/A N/A Q548M1 39041457
    899951 9c0b:S (3.26) BS01 A1AS6 N/A N/A Q548M1 39041457
    899952 9c0b:T (3.26) BS01 A1AS6 N/A N/A Q548M1 39041457
    899953 9c0b:U (3.26) BS01 A1AS6 N/A N/A Q548M1 39041457
    899954 9c0i:A (2.91) BS01 dna N/A N/A A0AA43TDM1 39208082
    899955 9c0i:A (2.91) BS02 rna N/A N/A A0AA43TDM1 39208082
    899956 9c0j:A (3.17) BS01 dna N/A N/A A0AA43TDM1 39208082
    899957 9c0j:A (3.17) BS02 rna N/A N/A A0AA43TDM1 39208082
    899958 9c0j:A (3.17) BS03 MG N/A N/A A0AA43TDM1 39208082
    899959 9c0j:A (3.17) BS04 TTP N/A N/A A0AA43TDM1 39208082
    899960 9c0o:A (1.53) BS01 peptide N/A N/A Q9W352 39029460
    899961 9c0o:A (1.53) BS02 ZN N/A N/A Q9W352 39029460
    899962 9c0o:A (1.53) BS03 ZN N/A N/A Q9W352 39029460
    899963 9c0o:A (1.53) BS04 ZN N/A N/A Q9W352 39029460
    899964 9c0y:A (1.4) BS01 A1ATR N/A N/A Q00610 N/A
    899965 9c0z:A (1.51) BS01 A1ATQ N/A N/A Q00610 N/A
    899966 9c11:A (1.95) BS01 THP N/A N/A P00644 N/A
    899967 9c11:B (1.95) BS01 THP N/A N/A P00644 N/A
    899968 9c11:B (1.95) BS02 CA N/A N/A P00644 N/A
    899969 9c1a:A (1.96) BS01 GDP N/A N/A O14807 39196705
    899970 9c1b:A (2.27) BS01 GDP N/A N/A O14807 39196705
    899971 9c1b:B (2.27) BS01 GDP N/A N/A O14807 39196705
    899972 9c1b:C (2.27) BS01 GDP N/A N/A O14807 39196705
    899973 9c1b:D (2.27) BS01 GDP N/A N/A O14807 39196705
    899974 9c1q:A (1.8) BS01 A1ATT N/A N/A Q9Y4B6 N/A
    899975 9c1r:A (1.59) BS01 A1ATS N/A N/A P08581 39088797
    899976 9c1w:A (2.0) BS01 XOO N/A N/A P31751 N/A
    899977 9c20:A (2.699) BS01 5N6 N/A N/A A0A0H2YT71 N/A
    899978 9c3d:A (1.85) BS01 ZN N/A GO:0008800 ... C6W709 N/A
    899979 9c3d:A (1.85) BS02 ZN N/A GO:0008800 ... C6W709 N/A
    899980 9c3s:A (2.16) BS01 dna N/A N/A A0A8I1DKW0 39244607
    899981 9c3s:A (2.16) BS02 dna N/A N/A A0A8I1DKW0 39244607
    899982 9c3s:A (2.16) BS03 dna N/A N/A A0A8I1DKW0 39244607
    899983 9c3s:A (2.16) BS04 FRU N/A N/A A0A8I1DKW0 39244607
    899984 9c3s:A (2.16) BS05 SFG N/A N/A A0A8I1DKW0 39244607
    899985 9c3s:B (2.16) BS01 dna N/A N/A A0A8I1DKW0 39244607
    899986 9c3s:B (2.16) BS02 dna N/A N/A A0A8I1DKW0 39244607
    899987 9c3s:B (2.16) BS03 dna N/A N/A A0A8I1DKW0 39244607
    899988 9c3s:B (2.16) BS04 dna N/A N/A A0A8I1DKW0 39244607
    899989 9c3s:B (2.16) BS05 FRU N/A N/A A0A8I1DKW0 39244607
    899990 9c3s:B (2.16) BS06 SFG N/A N/A A0A8I1DKW0 39244607
    899991 9c3s:C (2.16) BS01 dna N/A N/A A0A8I1DKW0 39244607
    899992 9c3s:C (2.16) BS02 dna N/A N/A A0A8I1DKW0 39244607
    899993 9c3s:C (2.16) BS03 dna N/A N/A A0A8I1DKW0 39244607
    899994 9c3s:C (2.16) BS04 dna N/A N/A A0A8I1DKW0 39244607
    899995 9c3s:C (2.16) BS05 SFG N/A N/A A0A8I1DKW0 39244607
    899996 9c3s:D (2.16) BS01 dna N/A N/A A0A8I1DKW0 39244607
    899997 9c3s:D (2.16) BS02 dna N/A N/A A0A8I1DKW0 39244607
    899998 9c3s:D (2.16) BS03 dna N/A N/A A0A8I1DKW0 39244607
    899999 9c3s:D (2.16) BS04 SFG N/A N/A A0A8I1DKW0 39244607
    900000 9c3t:A (2.37) BS01 dna N/A N/A A0A8I1DKW0 39244607
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023)(download the PDF file).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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