Home Research COVID-19 Services Publications People Teaching Job Opening News Forum --> -->
Online Services

●I-TASSER ●I-TASSER-MTD ●C-I-TASSER ●CR-I-TASSER ●QUARK ●C-QUARK ●LOMETS ●MUSTER ●CEthreader ●SEGMER ●DeepFold ●DeepFoldRNA ●FoldDesign ●COFACTOR ●COACH ●MetaGO ●TripletGO ●IonCom ●FG-MD ●ModRefiner ●REMO ●DEMO ●DEMO-EM ●DMFold ●SPRING ●COTH ●Threpp ●PEPPI ●BSpred ●ANGLOR ●EDock ●BSP-SLIM ●SAXSTER ●FUpred ●ThreaDom ●ThreaDomEx ●EvoDesign ●BindProf ●BindProfX ●SSIPe ●GPCR-I-TASSER ●MAGELLAN ●ResQ ●STRUM ●DAMpred

●TM-score ●TM-align ●US-align ●MM-align ●RNA-align ●NW-align ●LS-align ●EDTSurf ●MVP ●MVP-Fit ●SPICKER ●HAAD ●PSSpred ●3DRobot ●MR-REX ●I-TASSER-MR ●SVMSEQ ●NeBcon ●ResPRE ●TripletRes ●DeepPotential ●WDL-RF ●ATPbind ●DockRMSD ●DeepMSA ●FASPR ●EM-Refiner ●GPU-I-TASSER

●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
Download all results in tab-seperated text for 903398 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

    • Sort results by
    << < 4488 4489 4490 4491 4492 4493 4494 4495 4496 4497 4498 4499 4500 4501 4502 4503 4504 4505 4506 4507 4508 > >>
    Go to page

    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    899401 9bed:F (2.02) BS02 MOO N/A N/A A0A0U3FVB3 N/A
    899402 9bed:F (2.02) BS03 MOO N/A N/A A0A0U3FVB3 N/A
    899403 9bel:A (2.68) BS01 WO4 N/A N/A A0A0U3FVB3 N/A
    899404 9bel:A (2.68) BS02 WO4 N/A N/A A0A0U3FVB3 N/A
    899405 9bel:B (2.68) BS01 WO4 N/A N/A A0A0U3FVB3 N/A
    899406 9bel:C (2.68) BS01 WO4 N/A N/A A0A0U3FVB3 N/A
    899407 9bel:D (2.68) BS01 WO4 N/A N/A A0A0U3FVB3 N/A
    899408 9bel:D (2.68) BS02 WO4 N/A N/A A0A0U3FVB3 N/A
    899409 9bel:E (2.68) BS01 WO4 N/A N/A A0A0U3FVB3 N/A
    899410 9bel:E (2.68) BS02 WO4 N/A N/A A0A0U3FVB3 N/A
    899411 9bel:F (2.68) BS01 WO4 N/A N/A A0A0U3FVB3 N/A
    899412 9bel:F (2.68) BS02 WO4 N/A N/A A0A0U3FVB3 N/A
    899413 9bem:A (2.26) BS01 WO4 N/A N/A A0A0U3FVB3 N/A
    899414 9bem:A (2.26) BS02 WO4 N/A N/A A0A0U3FVB3 N/A
    899415 9bem:B (2.26) BS01 WO4 N/A N/A A0A0U3FVB3 N/A
    899416 9bem:B (2.26) BS02 WO4 N/A N/A A0A0U3FVB3 N/A
    899417 9bem:B (2.26) BS03 WO4 N/A N/A A0A0U3FVB3 N/A
    899418 9bem:C (2.26) BS01 WO4 N/A N/A A0A0U3FVB3 N/A
    899419 9bem:C (2.26) BS02 WO4 N/A N/A A0A0U3FVB3 N/A
    899420 9bem:C (2.26) BS03 WO4 N/A N/A A0A0U3FVB3 N/A
    899421 9bem:D (2.26) BS01 WO4 N/A N/A A0A0U3FVB3 N/A
    899422 9bem:D (2.26) BS02 WO4 N/A N/A A0A0U3FVB3 N/A
    899423 9bem:E (2.26) BS01 WO4 N/A N/A A0A0U3FVB3 N/A
    899424 9bem:E (2.26) BS02 WO4 N/A N/A A0A0U3FVB3 N/A
    899425 9bem:E (2.26) BS03 WO4 N/A N/A A0A0U3FVB3 N/A
    899426 9bem:F (2.26) BS01 WO4 N/A N/A A0A0U3FVB3 N/A
    899427 9bem:F (2.26) BS02 WO4 N/A N/A A0A0U3FVB3 N/A
    899428 9beo:A (1.78) BS01 WO4 N/A N/A A0A0U3FVB3 N/A
    899429 9beo:A (1.78) BS02 WO4 N/A N/A A0A0U3FVB3 N/A
    899430 9beo:A (1.78) BS03 WO4 N/A N/A A0A0U3FVB3 N/A
    899431 9beo:B (1.78) BS01 WO4 N/A N/A A0A0U3FVB3 N/A
    899432 9beo:B (1.78) BS02 WO4 N/A N/A A0A0U3FVB3 N/A
    899433 9beo:B (1.78) BS03 WO4 N/A N/A A0A0U3FVB3 N/A
    899434 9beo:C (1.78) BS01 WO4 N/A N/A A0A0U3FVB3 N/A
    899435 9beo:C (1.78) BS02 WO4 N/A N/A A0A0U3FVB3 N/A
    899436 9beo:C (1.78) BS03 WO4 N/A N/A A0A0U3FVB3 N/A
    899437 9beo:D (1.78) BS01 WO4 N/A N/A A0A0U3FVB3 N/A
    899438 9beo:D (1.78) BS02 WO4 N/A N/A A0A0U3FVB3 N/A
    899439 9beo:D (1.78) BS03 WO4 N/A N/A A0A0U3FVB3 N/A
    899440 9beo:E (1.78) BS01 WO4 N/A N/A A0A0U3FVB3 N/A
    899441 9beo:E (1.78) BS02 WO4 N/A N/A A0A0U3FVB3 N/A
    899442 9beo:E (1.78) BS03 WO4 N/A N/A A0A0U3FVB3 N/A
    899443 9beo:F (1.78) BS01 WO4 N/A N/A A0A0U3FVB3 N/A
    899444 9beo:F (1.78) BS02 WO4 N/A N/A A0A0U3FVB3 N/A
    899445 9ber:H (4.1) BS01 BMA N/A N/A N/A 39028623
    899446 9bew:K (3.3) BS01 MAN N/A N/A N/A 39028623
    899447 9bew:K (3.3) BS02 MAN N/A N/A N/A 39028623
    899448 9bew:L (3.3) BS01 MAN N/A N/A N/A 39028623
    899449 9bew:R (3.3) BS01 MAN N/A N/A N/A 39028623
    899450 9bez:A (1.9) BS01 A1ANT N/A N/A Q9UKV8 38923271
    899451 9bez:B (1.9) BS01 A1ANT N/A N/A Q9UKV8 38923271
    899452 9bez:C (1.9) BS01 A1ANT N/A N/A Q9UKV8 38923271
    899453 9bf0:A (1.78) BS01 UTP N/A N/A Q9UKV8 38923271
    899454 9bf0:B (1.78) BS01 UTP N/A N/A Q9UKV8 38923271
    899455 9bf0:C (1.78) BS01 UTP N/A N/A Q9UKV8 38923271
    899456 9bf2:A (1.59) BS01 U N/A N/A Q9UKV8 38923271
    899457 9bf2:B (1.59) BS01 U N/A N/A Q9UKV8 38923271
    899458 9bf2:C (1.59) BS01 U N/A N/A Q9UKV8 38923271
    899459 9bf5:C (3.07) BS01 dna N/A N/A B9TSM3 39173632
    899460 9bf5:D (3.07) BS01 dna N/A N/A B9TSM3 39173632
    899461 9bfb:A (1.92) BS01 A1AN9 N/A N/A P15056 39077892
    899462 9bfh:A (2.62) BS01 A1AN8 ? GO:0005515 ... P31224 37921493
    899463 9bfm:A (2.71) BS01 A1AON ? GO:0005515 ... P31224 37921493
    899464 9bfn:A (2.71) BS01 A1AOE ? GO:0005515 ... P31224 37921493
    899465 9bft:A (2.44) BS01 A1AOF ? GO:0005515 ... P31224 37921493
    899466 9bfy:A (1.26) BS01 GNP 3.6.5.2 N/A P01116 N/A
    899467 9bfy:A (1.26) BS02 A1AOL 3.6.5.2 N/A P01116 N/A
    899468 9bfy:B (1.26) BS01 GNP 3.6.5.2 N/A P01116 N/A
    899469 9bfy:B (1.26) BS02 MG 3.6.5.2 N/A P01116 N/A
    899470 9bfy:B (1.26) BS03 A1AOL 3.6.5.2 N/A P01116 N/A
    899471 9bfy:C (1.26) BS01 A1AOL 5.2.1.8 GO:0000413 ... P62937 N/A
    899472 9bfy:D (1.26) BS01 A1AOL 5.2.1.8 GO:0000413 ... P62937 N/A
    899473 9bg1:A (1.51) BS01 GNP 3.6.5.2 N/A P01116 N/A
    899474 9bg1:A (1.51) BS02 MG 3.6.5.2 N/A P01116 N/A
    899475 9bg1:A (1.51) BS03 A1AOH 3.6.5.2 N/A P01116 N/A
    899476 9bg1:B (1.51) BS01 GNP 3.6.5.2 N/A P01116 N/A
    899477 9bg1:B (1.51) BS02 MG 3.6.5.2 N/A P01116 N/A
    899478 9bg1:B (1.51) BS03 A1AOH 3.6.5.2 N/A P01116 N/A
    899479 9bg1:C (1.51) BS01 A1AOH 5.2.1.8 GO:0000413 ... P62937 N/A
    899480 9bg1:D (1.51) BS01 A1AOH 5.2.1.8 GO:0000413 ... P62937 N/A
    899481 9bge:D (4.2) BS01 MAN N/A N/A N/A 39240111
    899482 9bge:F (4.2) BS01 MAN N/A N/A N/A 39240111
    899483 9bge:H (4.2) BS01 MAN N/A N/A N/A 39240111
    899484 9bgr:A (1.05) BS01 A1APE N/A N/A N/A N/A
    899485 9bgr:A (1.05) BS02 A1APE N/A N/A N/A N/A
    899486 9bgr:B (1.05) BS01 A1APE N/A N/A N/A N/A
    899487 9bgr:B (1.05) BS02 A1APE N/A N/A N/A N/A
    899488 9bh5:AA (2.63) BS01 rna N/A N/A P46769 39209556
    899489 9bh5:AB (2.63) BS01 rna N/A N/A P48154 39209556
    899490 9bh5:AC (2.63) BS01 rna N/A N/A P51403 39209556
    899491 9bh5:AD (2.63) BS01 rna N/A N/A P48152 39209556
    899492 9bh5:AE (2.63) BS01 rna N/A N/A Q9N3X2 39209556
    899493 9bh5:AF (2.63) BS01 rna N/A N/A P49041 39209556
    899494 9bh5:AG (2.63) BS01 rna N/A N/A Q9NEN6 39209556
    899495 9bh5:AH (2.63) BS01 rna N/A N/A Q23312 39209556
    899496 9bh5:AI (2.63) BS01 rna N/A N/A P48156 39209556
    899497 9bh5:AI (2.63) BS02 rna N/A N/A P48156 39209556
    899498 9bh5:AJ (2.63) BS01 rna N/A N/A Q20228 39209556
    899499 9bh5:AK (2.63) BS01 rna N/A N/A O01869 39209556
    899500 9bh5:AL (2.63) BS01 rna N/A N/A Q20206 39209556
    899501 9bh5:AM (2.63) BS01 rna N/A N/A P49196 39209556
    899502 9bh5:AN (2.63) BS01 rna N/A N/A P51404 39209556
    899503 9bh5:AO (2.63) BS01 rna N/A N/A P48150 39209556
    899504 9bh5:AP (2.63) BS01 rna N/A N/A Q9XVP0 39209556
    899505 9bh5:AP (2.63) BS02 rna N/A N/A Q9XVP0 39209556
    899506 9bh5:AP (2.63) BS03 rna N/A N/A Q9XVP0 39209556
    899507 9bh5:AQ (2.63) BS01 rna N/A N/A Q22054 39209556
    899508 9bh5:AR (2.63) BS01 rna N/A N/A O01692 39209556
    899509 9bh5:AS (2.63) BS01 rna N/A N/A O18240 39209556
    899510 9bh5:AT (2.63) BS01 rna N/A N/A O18650 39209556
    899511 9bh5:AU (2.63) BS01 rna N/A N/A Q8WQA8 39209556
    899512 9bh5:AW (2.63) BS01 rna N/A N/A O17218 39209556
    899513 9bh5:AX (2.63) BS01 rna N/A N/A Q19877 39209556
    899514 9bh5:AY (2.63) BS01 rna N/A N/A Q1XFY9 39209556
    899515 9bh5:AZ (2.63) BS01 rna N/A N/A P52821 39209556
    899516 9bh5:Aa (2.63) BS01 rna N/A N/A O45499 39209556
    899517 9bh5:Ab (2.63) BS01 rna N/A N/A Q9TXP0 39209556
    899518 9bh5:Ac (2.63) BS01 rna N/A N/A Q95Y04 39209556
    899519 9bh5:Ad (2.63) BS01 rna N/A N/A P90983 39209556
    899520 9bh5:Ae (2.63) BS01 rna N/A N/A Q18231 39209556
    899521 9bh5:Af (2.63) BS01 rna N/A N/A P37165 39209556
    899522 9bh5:CA (2.63) BS01 rna N/A N/A Q9XVF7 39209556
    899523 9bh5:CA (2.63) BS02 rna N/A N/A Q9XVF7 39209556
    899524 9bh5:CB (2.63) BS01 rna N/A N/A P50880 39209556
    899525 9bh5:CC (2.63) BS01 rna N/A N/A O02056 39209556
    899526 9bh5:CC (2.63) BS02 rna N/A N/A O02056 39209556
    899527 9bh5:CD (2.63) BS01 rna N/A N/A P49405 39209556
    899528 9bh5:CD (2.63) BS02 rna N/A N/A P49405 39209556
    899529 9bh5:CE (2.63) BS01 rna N/A N/A P47991 39209556
    899530 9bh5:CF (2.63) BS01 rna N/A N/A O01802 39209556
    899531 9bh5:CF (2.63) BS02 rna N/A N/A O01802 39209556
    899532 9bh5:CG (2.63) BS01 rna N/A N/A Q966C6 39209556
    899533 9bh5:CG (2.63) BS02 rna N/A N/A Q966C6 39209556
    899534 9bh5:CH (2.63) BS01 rna N/A N/A Q95Y90 39209556
    899535 9bh5:CI (2.63) BS01 rna N/A N/A Q09533 39209556
    899536 9bh5:CI (2.63) BS02 rna N/A N/A Q09533 39209556
    899537 9bh5:CI (2.63) BS03 rna N/A N/A Q09533 39209556
    899538 9bh5:CJ (2.63) BS01 rna N/A N/A Q19162 39209556
    899539 9bh5:CJ (2.63) BS02 rna N/A N/A Q19162 39209556
    899540 9bh5:CJ (2.63) BS03 rna N/A N/A Q19162 39209556
    899541 9bh5:CL (2.63) BS01 rna N/A N/A P91128 39209556
    899542 9bh5:CL (2.63) BS02 rna N/A N/A P91128 39209556
    899543 9bh5:CM (2.63) BS01 rna N/A N/A Q9XVE9 39209556
    899544 9bh5:CN (2.63) BS01 rna N/A N/A P91374 39209556
    899545 9bh5:CN (2.63) BS02 rna N/A N/A P91374 39209556
    899546 9bh5:CO (2.63) BS01 rna N/A N/A Q27389 39209556
    899547 9bh5:CP (2.63) BS01 rna N/A N/A Q9BL19 39209556
    899548 9bh5:CP (2.63) BS02 rna N/A N/A Q9BL19 39209556
    899549 9bh5:CQ (2.63) BS01 rna N/A N/A O45946 39209556
    899550 9bh5:CR (2.63) BS01 rna N/A N/A O02639 39209556
    899551 9bh5:CR (2.63) BS02 rna N/A N/A O02639 39209556
    899552 9bh5:CS (2.63) BS01 rna N/A N/A O44480 39209556
    899553 9bh5:CS (2.63) BS02 rna N/A N/A O44480 39209556
    899554 9bh5:CT (2.63) BS01 rna N/A N/A P34334 39209556
    899555 9bh5:CT (2.63) BS02 rna N/A N/A P34334 39209556
    899556 9bh5:CU (2.63) BS01 rna N/A N/A P52819 39209556
    899557 9bh5:CV (2.63) BS01 rna N/A N/A P48158 39209556
    899558 9bh5:CW (2.63) BS01 rna N/A N/A O01868 39209556
    899559 9bh5:CX (2.63) BS01 rna N/A N/A Q20647 39209556
    899560 9bh5:CX (2.63) BS02 rna N/A N/A Q20647 39209556
    899561 9bh5:CY (2.63) BS01 rna N/A N/A Q19869 39209556
    899562 9bh5:CY (2.63) BS02 rna N/A N/A Q19869 39209556
    899563 9bh5:CZ (2.63) BS01 rna N/A N/A P91914 39209556
    899564 9bh5:Ca (2.63) BS01 rna N/A N/A Q9BKU5 39209556
    899565 9bh5:Cb (2.63) BS01 rna N/A N/A O45226 39209556
    899566 9bh5:Cc (2.63) BS01 rna N/A N/A Q9XWS4 39209556
    899567 9bh5:Cd (2.63) BS01 rna N/A N/A Q9U332 39209556
    899568 9bh5:Ce (2.63) BS01 rna N/A N/A Q22716 39209556
    899569 9bh5:Cf (2.63) BS01 rna N/A N/A P49180 39209556
    899570 9bh5:Cg (2.63) BS01 rna N/A N/A A3QMC5 39209556
    899571 9bh5:Ch (2.63) BS01 rna N/A N/A P34662 39209556
    899572 9bh5:Ch (2.63) BS02 rna N/A N/A P34662 39209556
    899573 9bh5:Ci (2.63) BS01 rna N/A N/A P49181 39209556
    899574 9bh5:Cj (2.63) BS01 rna N/A N/A O62388 39209556
    899575 9bh5:Cj (2.63) BS02 rna N/A N/A O62388 39209556
    899576 9bh5:Ck (2.63) BS01 rna N/A N/A O17570 39209556
    899577 9bh5:Cl (2.63) BS01 rna N/A N/A P52814 39209556
    899578 9bh5:Cl (2.63) BS02 rna N/A N/A P52814 39209556
    899579 9bh5:Cm (2.63) BS01 rna N/A N/A P49632 39209556
    899580 9bh5:Co (2.63) BS01 rna N/A N/A P48166 39209556
    899581 9bh5:Cp (2.63) BS01 rna N/A N/A Q9U2A8 39209556
    899582 9bh8:A (3.6) BS01 dna 2.7.7.49
    2.7.7.7
    3.6.4.12    		 GO:0003676 ... O75417 N/A
    899583 9bh8:B (3.6) BS01 dna 2.7.7.49
    2.7.7.7
    3.6.4.12    		 GO:0003676 ... O75417 N/A
    899584 9bh9:A (3.5) BS01 dna 2.7.7.49
    2.7.7.7
    3.6.4.12    		 GO:0003676 ... O75417 N/A
    899585 9bh9:A (3.5) BS02 dna 2.7.7.49
    2.7.7.7
    3.6.4.12    		 GO:0003676 ... O75417 N/A
    899586 9bh9:B (3.5) BS01 dna 2.7.7.49
    2.7.7.7
    3.6.4.12    		 GO:0003676 ... O75417 N/A
    899587 9bha:A (3.5) BS01 dna 2.7.7.49
    2.7.7.7
    3.6.4.12    		 GO:0003676 ... O75417 N/A
    899588 9bha:B (3.5) BS01 dna 2.7.7.49
    2.7.7.7
    3.6.4.12    		 GO:0003676 ... O75417 N/A
    899589 9bhr:A (1.62) BS01 A1API 2.7.11.1 GO:0016567 ... Q9Y4B6 N/A
    899590 9bhr:B (1.62) BS01 A1API 2.7.11.1 GO:0016567 ... Q9Y4B6 N/A
    899591 9bhs:A (1.43) BS01 A1APJ 2.7.11.1 GO:0016567 ... Q9Y4B6 N/A
    899592 9bhs:B (1.43) BS01 A1APJ 2.7.11.1 GO:0016567 ... Q9Y4B6 N/A
    899593 9bht:A (3.26) BS01 GDP N/A N/A N/A 38960133
    899594 9bht:A (3.26) BS02 GTP N/A N/A N/A 38960133
    899595 9bht:B (3.26) BS01 GDP N/A GO:0003924 ... F6V5P8 38960133
    899596 9bht:B (3.26) BS02 GTP N/A GO:0003924 ... F6V5P8 38960133
    899597 9bht:C (3.26) BS01 GDP N/A GO:0000775 ... H2Y169 38960133
    899598 9bht:C (3.26) BS02 GDP N/A GO:0000775 ... H2Y169 38960133
    899599 9bht:D (3.26) BS01 GDP N/A GO:0000775 ... H2Y169 38960133
    899600 9bht:D (3.26) BS02 GDP N/A GO:0000775 ... H2Y169 38960133
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

    • yangzhanglabumich.edu | (734) 647-1549 | 100 Washtenaw Avenue, Ann Arbor, MI 48109-2218