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●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
Download all results in tab-seperated text for 903398 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    899001 9bct:M (2.5) BS02 ZN N/A GO:0003677 ... Q5JH24 N/A
    899002 9bct:N (2.5) BS01 ZN N/A GO:0000428 ... Q5JJC9 N/A
    899003 9bct:P (2.5) BS01 ZN N/A GO:0000428 ... Q5JDM8 N/A
    899004 9bcu:A (2.2) BS01 dna N/A GO:0000287 ... Q5JE33 N/A
    899005 9bcu:A (2.2) BS02 dna N/A GO:0000287 ... Q5JE33 N/A
    899006 9bcu:A (2.2) BS03 rna N/A GO:0000287 ... Q5JE33 N/A
    899007 9bcu:A (2.2) BS04 MG N/A GO:0000287 ... Q5JE33 N/A
    899008 9bcu:A (2.2) BS05 ZN N/A GO:0000287 ... Q5JE33 N/A
    899009 9bcu:A (2.2) BS06 ZN N/A GO:0000287 ... Q5JE33 N/A
    899010 9bcu:B (2.2) BS01 dna N/A GO:0000428 ... Q5JE32 N/A
    899011 9bcu:B (2.2) BS02 dna N/A GO:0000428 ... Q5JE32 N/A
    899012 9bcu:B (2.2) BS03 rna N/A GO:0000428 ... Q5JE32 N/A
    899013 9bcu:B (2.2) BS04 ZN N/A GO:0000428 ... Q5JE32 N/A
    899014 9bcu:C (2.2) BS01 dna N/A GO:0000428 ... Q5JE34 N/A
    899015 9bcu:E (2.2) BS01 rna N/A GO:0000428 ... Q5JIY4 N/A
    899016 9bcu:J (2.2) BS01 rna N/A GO:0003677 ... Q5JH24 N/A
    899017 9bcu:J (2.2) BS02 ZN N/A GO:0003677 ... Q5JH24 N/A
    899018 9bcu:M (2.2) BS01 rna N/A GO:0003677 ... Q5JH24 N/A
    899019 9bcu:M (2.2) BS02 ZN N/A GO:0003677 ... Q5JH24 N/A
    899020 9bcu:N (2.2) BS01 ZN N/A GO:0000428 ... Q5JJC9 N/A
    899021 9bcu:P (2.2) BS01 ZN N/A GO:0000428 ... Q5JDM8 N/A
    899022 9bcz:A (1.99) BS01 CA 3.1.4.11 GO:0004435 ... Q2VRL0 N/A
    899023 9bd2:C (2.24) BS01 A1AL3 N/A N/A P43357 39190582
    899024 9bd3:A (2.58) BS01 peptide ? N/A P43358 38907034
    899025 9bd3:C (2.58) BS01 peptide ? N/A P43358 38907034
    899026 9bdc:A (2.54) BS01 dna N/A N/A Q96QE5 39164235
    899027 9bdc:B (2.54) BS01 dna N/A N/A Q96QE5 39164235
    899028 9bdc:E (2.54) BS01 dna N/A N/A O00411 39164235
    899029 9bdc:E (2.54) BS02 rna N/A N/A O00411 39164235
    899030 9bdc:E (2.54) BS03 dna N/A N/A O00411 39164235
    899031 9bdd:A (2.86) BS01 dna N/A N/A Q96QE5 39164235
    899032 9bdd:B (2.86) BS01 dna N/A N/A Q96QE5 39164235
    899033 9bdd:E (2.86) BS01 dna N/A N/A O00411 39164235
    899034 9bdd:E (2.86) BS02 rna N/A N/A O00411 39164235
    899035 9bdd:E (2.86) BS03 dna N/A N/A O00411 39164235
    899036 9bdd:E (2.86) BS04 APC N/A N/A O00411 39164235
    899037 9bdj:A (4.0) BS01 HEM N/A N/A P00432 N/A
    899038 9bdj:A (4.0) BS02 NDP N/A N/A P00432 N/A
    899039 9bdj:B (4.0) BS01 HEM N/A N/A P00432 N/A
    899040 9bdj:B (4.0) BS02 NDP N/A N/A P00432 N/A
    899041 9bdj:C (4.0) BS01 HEM N/A N/A P00432 N/A
    899042 9bdj:C (4.0) BS02 NDP N/A N/A P00432 N/A
    899043 9bdj:D (4.0) BS01 HEM N/A N/A P00432 N/A
    899044 9bdj:D (4.0) BS02 NDP N/A N/A P00432 N/A
    899045 9bdl:AL02 (2.8) BS01 rna N/A GO:0002181 ... G1TT27 38718836
    899046 9bdl:AL02 (2.8) BS02 rna N/A GO:0002181 ... G1TT27 38718836
    899047 9bdl:AL03 (2.8) BS01 rna N/A GO:0003723 ... G1TL06 38718836
    899048 9bdl:AL04 (2.8) BS01 rna N/A GO:0003723 ... A0A5F9DCT1 38718836
    899049 9bdl:AL04 (2.8) BS02 rna N/A GO:0003723 ... A0A5F9DCT1 38718836
    899050 9bdl:AL05 (2.8) BS01 rna N/A GO:0000027 ... P19949 38718836
    899051 9bdl:AL05 (2.8) BS02 rna N/A GO:0000027 ... P19949 38718836
    899052 9bdl:AL06 (2.8) BS01 rna N/A N/A G1SKF7 38718836
    899053 9bdl:AL07 (2.8) BS01 rna N/A GO:0000463 ... G1SV32 38718836
    899054 9bdl:AL07 (2.8) BS02 rna N/A GO:0000463 ... G1SV32 38718836
    899055 9bdl:AL08 (2.8) BS01 rna N/A N/A G1STW0 38718836
    899056 9bdl:AL08 (2.8) BS02 rna N/A N/A G1STW0 38718836
    899057 9bdl:AL09 (2.8) BS01 rna N/A GO:0002181 ... G1SWI6 38718836
    899058 9bdl:AL10 (2.8) BS01 rna N/A GO:0000027 ... B7NZQ2 38718836
    899059 9bdl:AL10 (2.8) BS02 rna N/A GO:0000027 ... B7NZQ2 38718836
    899060 9bdl:AL10 (2.8) BS03 rna N/A GO:0000027 ... B7NZQ2 38718836
    899061 9bdl:AL11 (2.8) BS01 rna N/A GO:0003723 ... G1TUB8 38718836
    899062 9bdl:AL11 (2.8) BS02 rna N/A GO:0003723 ... G1TUB8 38718836
    899063 9bdl:AL11 (2.8) BS03 rna N/A GO:0003723 ... G1TUB8 38718836
    899064 9bdl:AL13 (2.8) BS01 rna N/A GO:0003723 ... G1TKB3 38718836
    899065 9bdl:AL13 (2.8) BS02 rna N/A GO:0003723 ... G1TKB3 38718836
    899066 9bdl:AL14 (2.8) BS01 rna N/A N/A G1SZ12 38718836
    899067 9bdl:AL15 (2.8) BS01 rna N/A GO:0002181 ... G1T0C1 38718836
    899068 9bdl:AL15 (2.8) BS02 rna N/A GO:0002181 ... G1T0C1 38718836
    899069 9bdl:AL16 (2.8) BS01 rna N/A GO:0003729 ... G1TVS8 38718836
    899070 9bdl:AL17 (2.8) BS01 rna N/A N/A G1SCJ6 38718836
    899071 9bdl:AL17 (2.8) BS02 rna N/A N/A G1SCJ6 38718836
    899072 9bdl:AL18 (2.8) BS01 rna N/A GO:0002181 ... G1TFE0 38718836
    899073 9bdl:AL19 (2.8) BS01 rna N/A GO:0003723 ... G1TYL6 38718836
    899074 9bdl:AL19 (2.8) BS02 rna N/A GO:0003723 ... G1TYL6 38718836
    899075 9bdl:AL20 (2.8) BS01 rna N/A N/A G1TTY7 38718836
    899076 9bdl:AL20 (2.8) BS02 rna N/A N/A G1TTY7 38718836
    899077 9bdl:AL21 (2.8) BS01 rna N/A GO:0003735 ... G1SHQ2 38718836
    899078 9bdl:AL21 (2.8) BS02 rna N/A GO:0003735 ... G1SHQ2 38718836
    899079 9bdl:AL22 (2.8) BS01 rna N/A N/A G1TSG1 38718836
    899080 9bdl:AL23 (2.8) BS01 rna N/A GO:0000122 ... G1T6D1 38718836
    899081 9bdl:AL24 (2.8) BS01 rna N/A N/A G1SE28 38718836
    899082 9bdl:AL25 (2.8) BS01 rna N/A N/A G1SE76 38718836
    899083 9bdl:AL25 (2.8) BS02 rna N/A N/A G1SE76 38718836
    899084 9bdl:AL26 (2.8) BS01 rna N/A GO:0002181 ... G1SQH0 38718836
    899085 9bdl:AL26 (2.8) BS02 rna N/A GO:0002181 ... G1SQH0 38718836
    899086 9bdl:AL27 (2.8) BS01 rna N/A GO:0003735 ... G1TXF6 38718836
    899087 9bdl:AL28 (2.8) BS01 rna N/A GO:0003735 ... G1SNY0 38718836
    899088 9bdl:AL29 (2.8) BS01 rna N/A GO:0002181 ... G1SGR6 38718836
    899089 9bdl:AL30 (2.8) BS01 rna N/A N/A G1TDL2 38718836
    899090 9bdl:AL31 (2.8) BS01 rna N/A N/A G1SHG0 38718836
    899091 9bdl:AL32 (2.8) BS01 rna N/A GO:0005737 ... G1TUN8 38718836
    899092 9bdl:AL33 (2.8) BS01 rna N/A GO:0000049 ... G1SF08 38718836
    899093 9bdl:AL34 (2.8) BS01 rna N/A GO:0003735 ... G1TXG5 38718836
    899094 9bdl:AL35 (2.8) BS01 rna N/A GO:0000463 ... G1SIT5 38718836
    899095 9bdl:AL35 (2.8) BS02 rna N/A GO:0000463 ... G1SIT5 38718836
    899096 9bdl:AL36 (2.8) BS01 rna N/A GO:0002181 ... G1TTQ5 38718836
    899097 9bdl:AL37 (2.8) BS01 rna N/A N/A U3KPD5 38718836
    899098 9bdl:AL37 (2.8) BS02 rna N/A N/A U3KPD5 38718836
    899099 9bdl:AL38 (2.8) BS01 rna N/A GO:0003735 ... G1U001 38718836
    899100 9bdl:AL39 (2.8) BS01 rna N/A GO:0005840 ... G1TTN1 38718836
    899101 9bdl:AL39 (2.8) BS02 rna N/A GO:0005840 ... G1TTN1 38718836
    899102 9bdl:AL40 (2.8) BS01 rna N/A N/A P0DXC2 38718836
    899103 9bdl:AL42 (2.8) BS01 rna N/A N/A A0A5F9D391 38718836
    899104 9bdl:AL42 (2.8) BS02 rna N/A N/A A0A5F9D391 38718836
    899105 9bdl:AL42 (2.8) BS03 rna N/A N/A A0A5F9D391 38718836
    899106 9bdl:AL43 (2.8) BS01 rna N/A GO:0005737 ... G1SY53 38718836
    899107 9bdl:ALNW (2.8) BS01 rna N/A GO:0005737 ... G1U7L1 38718836
    899108 9bdl:ANG (2.8) BS01 rna N/A N/A P03950 38718836
    899109 9bdl:ANG (2.8) BS02 rna N/A N/A P03950 38718836
    899110 9bdl:ANG (2.8) BS03 rna N/A N/A P03950 38718836
    899111 9bdl:ANG (2.8) BS04 rna N/A N/A P03950 38718836
    899112 9bdl:ARAC (2.8) BS01 rna N/A GO:0001891 ... G1SJB4 38718836
    899113 9bdl:AS00 (2.8) BS01 rna N/A N/A G1TJH8 38718836
    899114 9bdl:AS01 (2.8) BS01 rna N/A N/A G1SS70 38718836
    899115 9bdl:AS02 (2.8) BS01 rna N/A N/A O18789 38718836
    899116 9bdl:AS03 (2.8) BS01 rna N/A GO:0003677 ... G1TNM3 38718836
    899117 9bdl:AS04 (2.8) BS01 rna N/A GO:0003723 ... G1TA47 38718836
    899118 9bdl:AS05 (2.8) BS01 rna N/A GO:0000028 ... G1TFM5 38718836
    899119 9bdl:AS06 (2.8) BS01 rna N/A GO:0000082 ... G1TM55 38718836
    899120 9bdl:AS07 (2.8) BS01 rna N/A GO:0003735 ... G1SVB0 38718836
    899121 9bdl:AS08 (2.8) BS01 rna N/A GO:0000462 ... G1TJW1 38718836
    899122 9bdl:AS08 (2.8) BS02 rna N/A GO:0000462 ... G1TJW1 38718836
    899123 9bdl:AS09 (2.8) BS01 rna N/A GO:0003735 ... B7NZS8 38718836
    899124 9bdl:AS10 (2.8) BS01 rna N/A N/A G1TPV3 38718836
    899125 9bdl:AS11 (2.8) BS01 rna N/A GO:0003735 ... G1TRM4 38718836
    899126 9bdl:AS12 (2.8) BS01 rna N/A N/A G1SFR8 38718836
    899127 9bdl:AS13 (2.8) BS01 rna N/A GO:0003735 ... G1SP51 38718836
    899128 9bdl:AS13 (2.8) BS02 rna N/A GO:0003735 ... G1SP51 38718836
    899129 9bdl:AS14 (2.8) BS01 rna N/A N/A G1T1F0 38718836
    899130 9bdl:AS15 (2.8) BS01 rna N/A N/A G1U0Q2 38718836
    899131 9bdl:AS16 (2.8) BS01 rna N/A GO:0000462 ... G1SGX4 38718836
    899132 9bdl:AS17 (2.8) BS01 rna N/A GO:0003735 ... G1TU13 38718836
    899133 9bdl:AS18 (2.8) BS01 rna N/A GO:0003735 ... G1TPG3 38718836
    899134 9bdl:AS19 (2.8) BS01 rna N/A GO:0000028 ... G1TN62 38718836
    899135 9bdl:AS20 (2.8) BS01 rna N/A N/A G1SIZ2 38718836
    899136 9bdl:AS22 (2.8) BS01 rna N/A GO:0003735 ... G1TG89 38718836
    899137 9bdl:AS23 (2.8) BS01 rna N/A GO:0003735 ... G1SZ47 38718836
    899138 9bdl:AS24 (2.8) BS01 rna N/A GO:0005840 ... G1T3D8 38718836
    899139 9bdl:AS25 (2.8) BS01 rna N/A N/A G1TDB3 38718836
    899140 9bdl:AS26 (2.8) BS01 rna N/A N/A G1TFE8 38718836
    899141 9bdl:AS27 (2.8) BS01 rna N/A GO:0000028 ... G1TZ76 38718836
    899142 9bdl:AS28 (2.8) BS01 rna N/A GO:0000028 ... G1TIB4 38718836
    899143 9bdl:AS29 (2.8) BS01 rna N/A GO:0003735 ... G1U7M4 38718836
    899144 9bdl:AS30 (2.8) BS01 rna N/A N/A G1T8A2 38718836
    899145 9bdn:AL02 (3.1) BS01 rna N/A GO:0002181 ... G1TT27 38718836
    899146 9bdn:AL02 (3.1) BS02 rna N/A GO:0002181 ... G1TT27 38718836
    899147 9bdn:AL03 (3.1) BS01 rna N/A GO:0003723 ... G1TL06 38718836
    899148 9bdn:AL04 (3.1) BS01 rna N/A GO:0003723 ... A0A5F9DCT1 38718836
    899149 9bdn:AL04 (3.1) BS02 rna N/A GO:0003723 ... A0A5F9DCT1 38718836
    899150 9bdn:AL05 (3.1) BS01 rna N/A GO:0000027 ... P19949 38718836
    899151 9bdn:AL05 (3.1) BS02 rna N/A GO:0000027 ... P19949 38718836
    899152 9bdn:AL06 (3.1) BS01 rna N/A N/A G1SKF7 38718836
    899153 9bdn:AL07 (3.1) BS01 rna N/A GO:0000463 ... G1SV32 38718836
    899154 9bdn:AL07 (3.1) BS02 rna N/A GO:0000463 ... G1SV32 38718836
    899155 9bdn:AL08 (3.1) BS01 rna N/A N/A G1STW0 38718836
    899156 9bdn:AL08 (3.1) BS02 rna N/A N/A G1STW0 38718836
    899157 9bdn:AL09 (3.1) BS01 rna N/A GO:0002181 ... G1SWI6 38718836
    899158 9bdn:AL10 (3.1) BS01 rna N/A GO:0000027 ... B7NZQ2 38718836
    899159 9bdn:AL10 (3.1) BS02 rna N/A GO:0000027 ... B7NZQ2 38718836
    899160 9bdn:AL10 (3.1) BS03 rna N/A GO:0000027 ... B7NZQ2 38718836
    899161 9bdn:AL11 (3.1) BS01 rna N/A GO:0003723 ... G1TUB8 38718836
    899162 9bdn:AL11 (3.1) BS02 rna N/A GO:0003723 ... G1TUB8 38718836
    899163 9bdn:AL11 (3.1) BS03 rna N/A GO:0003723 ... G1TUB8 38718836
    899164 9bdn:AL12 (3.1) BS01 rna N/A GO:0003723 ... G1SMR7 38718836
    899165 9bdn:AL13 (3.1) BS01 rna N/A GO:0003723 ... G1TKB3 38718836
    899166 9bdn:AL13 (3.1) BS02 rna N/A GO:0003723 ... G1TKB3 38718836
    899167 9bdn:AL14 (3.1) BS01 rna N/A N/A G1SZ12 38718836
    899168 9bdn:AL15 (3.1) BS01 rna N/A GO:0002181 ... G1T0C1 38718836
    899169 9bdn:AL15 (3.1) BS02 rna N/A GO:0002181 ... G1T0C1 38718836
    899170 9bdn:AL16 (3.1) BS01 rna N/A GO:0003729 ... G1TVS8 38718836
    899171 9bdn:AL17 (3.1) BS01 rna N/A N/A G1SCJ6 38718836
    899172 9bdn:AL17 (3.1) BS02 rna N/A N/A G1SCJ6 38718836
    899173 9bdn:AL18 (3.1) BS01 rna N/A GO:0002181 ... G1TFE0 38718836
    899174 9bdn:AL19 (3.1) BS01 rna N/A GO:0003723 ... G1TYL6 38718836
    899175 9bdn:AL19 (3.1) BS02 rna N/A GO:0003723 ... G1TYL6 38718836
    899176 9bdn:AL20 (3.1) BS01 rna N/A N/A G1TTY7 38718836
    899177 9bdn:AL20 (3.1) BS02 rna N/A N/A G1TTY7 38718836
    899178 9bdn:AL21 (3.1) BS01 rna N/A GO:0003735 ... G1SHQ2 38718836
    899179 9bdn:AL21 (3.1) BS02 rna N/A GO:0003735 ... G1SHQ2 38718836
    899180 9bdn:AL22 (3.1) BS01 rna N/A N/A G1TSG1 38718836
    899181 9bdn:AL23 (3.1) BS01 rna N/A GO:0000122 ... G1T6D1 38718836
    899182 9bdn:AL24 (3.1) BS01 rna N/A N/A G1SE28 38718836
    899183 9bdn:AL25 (3.1) BS01 rna N/A N/A G1SE76 38718836
    899184 9bdn:AL25 (3.1) BS02 rna N/A N/A G1SE76 38718836
    899185 9bdn:AL26 (3.1) BS01 rna N/A GO:0002181 ... G1SQH0 38718836
    899186 9bdn:AL26 (3.1) BS02 rna N/A GO:0002181 ... G1SQH0 38718836
    899187 9bdn:AL27 (3.1) BS01 rna N/A GO:0003735 ... G1TXF6 38718836
    899188 9bdn:AL28 (3.1) BS01 rna N/A GO:0003735 ... G1SNY0 38718836
    899189 9bdn:AL29 (3.1) BS01 rna N/A GO:0002181 ... G1SGR6 38718836
    899190 9bdn:AL30 (3.1) BS01 rna N/A N/A G1TDL2 38718836
    899191 9bdn:AL31 (3.1) BS01 rna N/A N/A G1SHG0 38718836
    899192 9bdn:AL32 (3.1) BS01 rna N/A GO:0005737 ... G1TUN8 38718836
    899193 9bdn:AL33 (3.1) BS01 rna N/A GO:0000049 ... G1SF08 38718836
    899194 9bdn:AL34 (3.1) BS01 rna N/A GO:0003735 ... G1TXG5 38718836
    899195 9bdn:AL35 (3.1) BS01 rna N/A GO:0000463 ... G1SIT5 38718836
    899196 9bdn:AL35 (3.1) BS02 rna N/A GO:0000463 ... G1SIT5 38718836
    899197 9bdn:AL36 (3.1) BS01 rna N/A GO:0002181 ... G1TTQ5 38718836
    899198 9bdn:AL37 (3.1) BS01 rna N/A N/A U3KPD5 38718836
    899199 9bdn:AL37 (3.1) BS02 rna N/A N/A U3KPD5 38718836
    899200 9bdn:AL38 (3.1) BS01 rna N/A GO:0003735 ... G1U001 38718836
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023)(download the PDF file).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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