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BioLiP Library
Download all results in tab-seperated text for 903398 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    898401 9b22:A (1.3) BS01 MG 3.6.1.13 GO:0000166 ... A0A0H3GVQ7 N/A
    898402 9b22:A (1.3) BS02 MG 3.6.1.13 GO:0000166 ... A0A0H3GVQ7 N/A
    898403 9b22:A (1.3) BS03 AR6 3.6.1.13 GO:0000166 ... A0A0H3GVQ7 N/A
    898404 9b22:A (1.3) BS04 AR6 3.6.1.13 GO:0000166 ... A0A0H3GVQ7 N/A
    898405 9b22:A (1.3) BS05 AMP 3.6.1.13 GO:0000166 ... A0A0H3GVQ7 N/A
    898406 9b22:B (1.3) BS01 AR6 3.6.1.13 GO:0000166 ... A0A0H3GVQ7 N/A
    898407 9b22:B (1.3) BS02 MG 3.6.1.13 GO:0000166 ... A0A0H3GVQ7 N/A
    898408 9b22:B (1.3) BS03 MG 3.6.1.13 GO:0000166 ... A0A0H3GVQ7 N/A
    898409 9b22:B (1.3) BS04 AR6 3.6.1.13 GO:0000166 ... A0A0H3GVQ7 N/A
    898410 9b22:B (1.3) BS05 AMP 3.6.1.13 GO:0000166 ... A0A0H3GVQ7 N/A
    898411 9b27:A (3.51) BS01 ADP 3.6.4.- GO:0000287 ... P68135 38843827
    898412 9b27:B (3.51) BS01 ADP 3.6.4.- GO:0000287 ... P68135 38843827
    898413 9b27:C (3.51) BS01 ADP 3.6.4.- GO:0000287 ... P68135 38843827
    898414 9b27:C (3.51) BS02 MG 3.6.4.- GO:0000287 ... P68135 38843827
    898415 9b27:D (3.51) BS01 ADP 3.6.4.- GO:0000287 ... P68135 38843827
    898416 9b27:E (3.51) BS01 ADP 3.6.4.- GO:0000287 ... P68135 38843827
    898417 9b27:F (3.51) BS01 ADP 3.6.4.- GO:0000287 ... P68135 38843827
    898418 9b2h:A (1.32) BS01 A1AIH N/A GO:0004190 ... Q5RZ08 38973505
    898419 9b2h:B (1.32) BS01 A1AIH N/A GO:0004190 ... Q5RZ08 38973505
    898420 9b33:E (4.07) BS01 ZN ? GO:0005509 ... C0HJY1 38778115
    898421 9b33:E (4.07) BS02 CA ? GO:0005509 ... C0HJY1 38778115
    898422 9b33:F (4.07) BS01 ZN ? GO:0005509 ... C0HJY1 38778115
    898423 9b33:F (4.07) BS02 CA ? GO:0005509 ... C0HJY1 38778115
    898424 9b34:E (3.58) BS01 ZN ? N/A P02866 38778115
    898425 9b34:E (3.58) BS02 CA ? N/A P02866 38778115
    898426 9b34:F (3.58) BS01 ZN ? N/A P02866 38778115
    898427 9b34:F (3.58) BS02 CA ? N/A P02866 38778115
    898428 9b35:A (3.4) BS01 GLU ? N/A P42260 38778115
    898429 9b35:B (3.4) BS01 GLU ? N/A P42260 38778115
    898430 9b35:C (3.4) BS01 GLU ? N/A P42260 38778115
    898431 9b35:D (3.4) BS01 GLU ? N/A P42260 38778115
    898432 9b36:A (4.29) BS01 GAL ? N/A P42260 38778115
    898433 9b36:A (4.29) BS02 2J9 ? N/A P42260 38778115
    898434 9b36:A (4.29) BS03 GLU ? N/A P42260 38778115
    898435 9b36:A (4.29) BS04 CLR ? N/A P42260 38778115
    898436 9b36:A (4.29) BS05 CLR ? N/A P42260 38778115
    898437 9b36:A (4.29) BS06 2J9 ? N/A P42260 38778115
    898438 9b36:B (4.29) BS01 2J9 ? N/A P42260 38778115
    898439 9b36:B (4.29) BS02 GLU ? N/A P42260 38778115
    898440 9b36:B (4.29) BS03 2J9 ? N/A P42260 38778115
    898441 9b36:C (4.29) BS01 MAN ? N/A P42260 38778115
    898442 9b36:C (4.29) BS02 2J9 ? N/A P42260 38778115
    898443 9b36:C (4.29) BS03 CLR ? N/A P42260 38778115
    898444 9b36:C (4.29) BS04 2J9 ? N/A P42260 38778115
    898445 9b36:C (4.29) BS05 GLU ? N/A P42260 38778115
    898446 9b36:C (4.29) BS06 CLR ? N/A P42260 38778115
    898447 9b36:D (4.29) BS01 2J9 ? N/A P42260 38778115
    898448 9b36:D (4.29) BS02 2J9 ? N/A P42260 38778115
    898449 9b36:D (4.29) BS03 GLU ? N/A P42260 38778115
    898450 9b36:E (4.29) BS01 MAN ? GO:0005509 ... C0HJY1 38778115
    898451 9b36:E (4.29) BS02 ZN ? GO:0005509 ... C0HJY1 38778115
    898452 9b36:E (4.29) BS03 CA ? GO:0005509 ... C0HJY1 38778115
    898453 9b36:F (4.29) BS01 MAN ? GO:0005509 ... C0HJY1 38778115
    898454 9b36:F (4.29) BS02 ZN ? GO:0005509 ... C0HJY1 38778115
    898455 9b36:F (4.29) BS03 CA ? GO:0005509 ... C0HJY1 38778115
    898456 9b36:G (4.29) BS01 MAN ? GO:0005509 ... C0HJY1 38778115
    898457 9b36:G (4.29) BS02 ZN ? GO:0005509 ... C0HJY1 38778115
    898458 9b36:G (4.29) BS03 CA ? GO:0005509 ... C0HJY1 38778115
    898459 9b36:H (4.29) BS01 MAN ? GO:0005509 ... C0HJY1 38778115
    898460 9b36:H (4.29) BS02 ZN ? GO:0005509 ... C0HJY1 38778115
    898461 9b36:H (4.29) BS03 CA ? GO:0005509 ... C0HJY1 38778115
    898462 9b37:A (6.66) BS01 2J9 ? N/A P42260 38778115
    898463 9b37:A (6.66) BS02 GLU ? N/A P42260 38778115
    898464 9b37:A (6.66) BS03 CLR ? N/A P42260 38778115
    898465 9b37:A (6.66) BS04 CLR ? N/A P42260 38778115
    898466 9b37:A (6.66) BS05 2J9 ? N/A P42260 38778115
    898467 9b37:B (6.66) BS01 2J9 ? N/A P42260 38778115
    898468 9b37:B (6.66) BS02 GLU ? N/A P42260 38778115
    898469 9b37:B (6.66) BS03 2J9 ? N/A P42260 38778115
    898470 9b37:C (6.66) BS01 2J9 ? N/A P42260 38778115
    898471 9b37:C (6.66) BS02 CLR ? N/A P42260 38778115
    898472 9b37:C (6.66) BS03 2J9 ? N/A P42260 38778115
    898473 9b37:C (6.66) BS04 GLU ? N/A P42260 38778115
    898474 9b37:C (6.66) BS05 CLR ? N/A P42260 38778115
    898475 9b37:D (6.66) BS01 2J9 ? N/A P42260 38778115
    898476 9b37:D (6.66) BS02 CLR ? N/A P42260 38778115
    898477 9b37:D (6.66) BS03 2J9 ? N/A P42260 38778115
    898478 9b37:D (6.66) BS04 GLU ? N/A P42260 38778115
    898479 9b37:E (6.66) BS01 ZN ? GO:0005509 ... C0HJY1 38778115
    898480 9b37:E (6.66) BS02 CA ? GO:0005509 ... C0HJY1 38778115
    898481 9b37:F (6.66) BS01 MAN ? GO:0005509 ... C0HJY1 38778115
    898482 9b37:F (6.66) BS02 ZN ? GO:0005509 ... C0HJY1 38778115
    898483 9b37:F (6.66) BS03 CA ? GO:0005509 ... C0HJY1 38778115
    898484 9b38:A (3.36) BS01 GLU ? N/A P42260 38778115
    898485 9b38:A (3.36) BS02 MAN ? N/A P42260 38778115
    898486 9b38:B (3.36) BS01 GLU ? N/A P42260 38778115
    898487 9b38:C (3.36) BS01 GLU ? N/A P42260 38778115
    898488 9b38:C (3.36) BS02 MAN ? N/A P42260 38778115
    898489 9b38:D (3.36) BS01 GLU ? N/A P42260 38778115
    898490 9b39:A (3.84) BS01 MAN ? N/A P42260 38778115
    898491 9b39:A (3.84) BS02 GLU ? N/A P42260 38778115
    898492 9b39:B (3.84) BS01 GLU ? N/A P42260 38778115
    898493 9b39:C (3.84) BS01 GLU ? N/A P42260 38778115
    898494 9b39:D (3.84) BS01 GLU ? N/A P42260 38778115
    898495 9b3b:A (1.62) BS01 A1AIM N/A N/A Q9NUW8 N/A
    898496 9b3b:B (1.62) BS01 A1AIM N/A N/A Q9NUW8 N/A
    898497 9b3d:A (3.41) BS01 ADP 3.6.4.- GO:0000287 ... P68135 38843827
    898498 9b3d:B (3.41) BS01 ADP 3.6.4.- GO:0000287 ... P68135 38843827
    898499 9b3d:C (3.41) BS01 ADP 3.6.4.- GO:0000287 ... P68135 38843827
    898500 9b3d:C (3.41) BS02 MG 3.6.4.- GO:0000287 ... P68135 38843827
    898501 9b3d:D (3.41) BS01 ADP 3.6.4.- GO:0000287 ... P68135 38843827
    898502 9b3d:E (3.41) BS01 ADP 3.6.4.- GO:0000287 ... P68135 38843827
    898503 9b3d:F (3.41) BS01 ADP 3.6.4.- GO:0000287 ... P68135 38843827
    898504 9b3p:A (3.0) BS01 dna ? GO:0000775 ... P84243 38920622
    898505 9b3p:A (3.0) BS02 dna ? GO:0000775 ... P84243 38920622
    898506 9b3p:B (3.0) BS01 dna ? GO:0000786 ... P62799 38920622
    898507 9b3p:B (3.0) BS02 dna ? GO:0000786 ... P62799 38920622
    898508 9b3p:C (3.0) BS01 dna ? GO:0000786 ... P0C0S6 38920622
    898509 9b3p:C (3.0) BS02 dna ? GO:0000786 ... P0C0S6 38920622
    898510 9b3p:D (3.0) BS01 dna ? GO:0000786 ... P02281 38920622
    898511 9b3p:D (3.0) BS02 dna ? GO:0000786 ... P02281 38920622
    898512 9b3p:E (3.0) BS01 dna ? GO:0000775 ... P84243 38920622
    898513 9b3p:E (3.0) BS02 dna ? GO:0000775 ... P84243 38920622
    898514 9b3p:F (3.0) BS01 dna ? GO:0000786 ... P62799 38920622
    898515 9b3p:F (3.0) BS02 dna ? GO:0000786 ... P62799 38920622
    898516 9b3p:G (3.0) BS01 dna ? GO:0000786 ... P0C0S6 38920622
    898517 9b3p:G (3.0) BS02 dna ? GO:0000786 ... P0C0S6 38920622
    898518 9b3p:H (3.0) BS01 dna ? GO:0000786 ... P02281 38920622
    898519 9b3p:H (3.0) BS02 dna ? GO:0000786 ... P02281 38920622
    898520 9b3q:A (3.6) BS01 ADP 3.6.4.- GO:0000146 ... P68032 N/A
    898521 9b3q:D (3.6) BS01 ADP 3.6.4.- GO:0000146 ... P68032 N/A
    898522 9b3q:E (3.6) BS01 ADP 3.6.4.- GO:0000146 ... P68032 N/A
    898523 9b3r:A (3.5) BS01 ADP 3.6.4.- GO:0000146 ... P68032 N/A
    898524 9b3r:D (3.5) BS01 ADP 3.6.4.- GO:0000146 ... P68032 N/A
    898525 9b3r:E (3.5) BS01 ADP 3.6.4.- GO:0000146 ... P68032 N/A
    898526 9b4e:A (2.7) BS01 P5S N/A N/A P48651 39208797
    898527 9b4e:A (2.7) BS02 P5S N/A N/A P48651 39208797
    898528 9b4e:A (2.7) BS03 LBN N/A N/A P48651 39208797
    898529 9b4e:A (2.7) BS04 A1AIS N/A N/A P48651 39208797
    898530 9b4e:A (2.7) BS05 6OU N/A N/A P48651 39208797
    898531 9b4e:A (2.7) BS06 CA N/A N/A P48651 39208797
    898532 9b4e:A (2.7) BS07 LBN N/A N/A P48651 39208797
    898533 9b4e:A (2.7) BS08 LBN N/A N/A P48651 39208797
    898534 9b4e:B (2.7) BS01 LBN N/A N/A P48651 39208797
    898535 9b4e:B (2.7) BS02 LBN N/A N/A P48651 39208797
    898536 9b4e:B (2.7) BS03 P5S N/A N/A P48651 39208797
    898537 9b4e:B (2.7) BS04 P5S N/A N/A P48651 39208797
    898538 9b4e:B (2.7) BS05 LBN N/A N/A P48651 39208797
    898539 9b4e:B (2.7) BS06 A1AIS N/A N/A P48651 39208797
    898540 9b4e:B (2.7) BS07 6OU N/A N/A P48651 39208797
    898541 9b4e:B (2.7) BS08 CA N/A N/A P48651 39208797
    898542 9b4f:A (3.27) BS01 CA N/A N/A P48651 39208797
    898543 9b4f:B (3.27) BS01 CA N/A N/A P48651 39208797
    898544 9b4g:A (2.87) BS01 P5S N/A N/A P48651 39208797
    898545 9b4g:A (2.87) BS02 P5S N/A N/A P48651 39208797
    898546 9b4g:A (2.87) BS03 LBN N/A N/A P48651 39208797
    898547 9b4g:A (2.87) BS04 A1AIS N/A N/A P48651 39208797
    898548 9b4g:A (2.87) BS05 6OU N/A N/A P48651 39208797
    898549 9b4g:A (2.87) BS06 CA N/A N/A P48651 39208797
    898550 9b4g:A (2.87) BS07 A1AIT N/A N/A P48651 39208797
    898551 9b4g:A (2.87) BS08 LBN N/A N/A P48651 39208797
    898552 9b4g:A (2.87) BS09 LBN N/A N/A P48651 39208797
    898553 9b4g:B (2.87) BS01 LBN N/A N/A P48651 39208797
    898554 9b4g:B (2.87) BS02 LBN N/A N/A P48651 39208797
    898555 9b4g:B (2.87) BS03 P5S N/A N/A P48651 39208797
    898556 9b4g:B (2.87) BS04 P5S N/A N/A P48651 39208797
    898557 9b4g:B (2.87) BS05 LBN N/A N/A P48651 39208797
    898558 9b4g:B (2.87) BS06 A1AIS N/A N/A P48651 39208797
    898559 9b4g:B (2.87) BS07 6OU N/A N/A P48651 39208797
    898560 9b4g:B (2.87) BS08 CA N/A N/A P48651 39208797
    898561 9b4g:B (2.87) BS09 A1AIT N/A N/A P48651 39208797
    898562 9b4h:A (3.1) BS01 FUB ? N/A A8J9H7 38552624
    898563 9b4h:A (3.1) BS02 FUB ? N/A A8J9H7 38552624
    898564 9b4h:A (3.1) BS03 FUB ? N/A A8J9H7 38552624
    898565 9b4h:A (3.1) BS04 FUB ? N/A A8J9H7 38552624
    898566 9b4h:A (3.1) BS05 FUB ? N/A A8J9H7 38552624
    898567 9b4h:A (3.1) BS06 FUB ? N/A A8J9H7 38552624
    898568 9b4h:A (3.1) BS07 FUB ? N/A A8J9H7 38552624
    898569 9b4h:A (3.1) BS08 FUB ? N/A A8J9H7 38552624
    898570 9b4h:A (3.1) BS09 FUB ? N/A A8J9H7 38552624
    898571 9b4h:A (3.1) BS10 FUB ? N/A A8J9H7 38552624
    898572 9b4h:A (3.1) BS11 FUB ? N/A A8J9H7 38552624
    898573 9b4h:A (3.1) BS12 FUB ? N/A A8J9H7 38552624
    898574 9b4h:A (3.1) BS13 FUB ? N/A A8J9H7 38552624
    898575 9b4h:A (3.1) BS14 FUB ? N/A A8J9H7 38552624
    898576 9b4h:A (3.1) BS15 FUB ? N/A A8J9H7 38552624
    898577 9b4h:A (3.1) BS16 FUB ? N/A A8J9H7 38552624
    898578 9b4h:A (3.1) BS17 FUB ? N/A A8J9H7 38552624
    898579 9b4h:A (3.1) BS18 FUB ? N/A A8J9H7 38552624
    898580 9b4h:A (3.1) BS19 FUB ? N/A A8J9H7 38552624
    898581 9b4h:A (3.1) BS20 A1AIO ? N/A A8J9H7 38552624
    898582 9b4h:A (3.1) BS21 A1AIO ? N/A A8J9H7 38552624
    898583 9b4h:A (3.1) BS22 A1AIO ? N/A A8J9H7 38552624
    898584 9b4h:A (3.1) BS23 A1AIO ? N/A A8J9H7 38552624
    898585 9b4h:A (3.1) BS24 A1AIO ? N/A A8J9H7 38552624
    898586 9b4h:A (3.1) BS25 A1AIO ? N/A A8J9H7 38552624
    898587 9b4h:A (3.1) BS26 A1AIO ? N/A A8J9H7 38552624
    898588 9b4h:A (3.1) BS27 A1AIO ? N/A A8J9H7 38552624
    898589 9b4h:A (3.1) BS28 GLA ? N/A A8J9H7 38552624
    898590 9b4h:A (3.1) BS29 GLA ? N/A A8J9H7 38552624
    898591 9b4h:A (3.1) BS30 GLA ? N/A A8J9H7 38552624
    898592 9b4h:A (3.1) BS31 GLA ? N/A A8J9H7 38552624
    898593 9b4h:A (3.1) BS32 GLA ? N/A A8J9H7 38552624
    898594 9b4h:A (3.1) BS33 GLA ? N/A A8J9H7 38552624
    898595 9b4h:A (3.1) BS34 GLA ? N/A A8J9H7 38552624
    898596 9b4h:A (3.1) BS35 GLA ? N/A A8J9H7 38552624
    898597 9b4h:A (3.1) BS36 GLA ? N/A A8J9H7 38552624
    898598 9b4h:A (3.1) BS37 GLA ? N/A A8J9H7 38552624
    898599 9b4h:A (3.1) BS38 GLA ? N/A A8J9H7 38552624
    898600 9b4h:B (3.1) BS01 34V ? N/A A8J9H7 38552624
    Reference:
    • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023)(download the PDF file).
    • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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