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BioLiP Library
Download all results in tab-seperated text for 903398 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    898201 9b00:1r (2.8) BS01 rna N/A N/A Q5SLQ0 39019034
    898202 9b00:1s (2.8) BS01 rna N/A N/A Q5SHP2 39019034
    898203 9b00:1t (2.8) BS01 rna N/A N/A P80380 39019034
    898204 9b00:1t (2.8) BS02 MG N/A N/A P80380 39019034
    898205 9b00:20 (2.8) BS01 rna N/A N/A P60493 39019034
    898206 9b00:20 (2.8) BS02 rna N/A N/A P60493 39019034
    898207 9b00:21 (2.8) BS01 rna N/A N/A P60494 39019034
    898208 9b00:21 (2.8) BS02 rna N/A N/A P60494 39019034
    898209 9b00:21 (2.8) BS03 MG N/A N/A P60494 39019034
    898210 9b00:22 (2.8) BS01 rna N/A N/A Q5SHP6 39019034
    898211 9b00:23 (2.8) BS01 rna N/A N/A Q5SHQ6 39019034
    898212 9b00:23 (2.8) BS02 rna N/A N/A Q5SHQ6 39019034
    898213 9b00:23 (2.8) BS03 MG N/A N/A Q5SHQ6 39019034
    898214 9b00:24 (2.8) BS01 rna N/A N/A Q5SJE1 39019034
    898215 9b00:24 (2.8) BS02 ZN N/A N/A Q5SJE1 39019034
    898216 9b00:25 (2.8) BS01 rna N/A N/A P80339 39019034
    898217 9b00:25 (2.8) BS02 ZN N/A N/A P80339 39019034
    898218 9b00:26 (2.8) BS01 rna N/A N/A P35871 39019034
    898219 9b00:26 (2.8) BS02 ZN N/A N/A P35871 39019034
    898220 9b00:27 (2.8) BS01 rna N/A N/A P80340 39019034
    898221 9b00:27 (2.8) BS02 MG N/A N/A P80340 39019034
    898222 9b00:28 (2.8) BS01 rna N/A N/A Q5SKU1 39019034
    898223 9b00:28 (2.8) BS02 MG N/A N/A Q5SKU1 39019034
    898224 9b00:29 (2.8) BS01 rna N/A N/A Q5SHR2 39019034
    898225 9b00:29 (2.8) BS02 ZN N/A N/A Q5SHR2 39019034
    898226 9b00:2D (2.8) BS01 rna N/A N/A P60405 39019034
    898227 9b00:2D (2.8) BS02 rna N/A N/A P60405 39019034
    898228 9b00:2D (2.8) BS03 MG N/A N/A P60405 39019034
    898229 9b00:2D (2.8) BS04 MG N/A N/A P60405 39019034
    898230 9b00:2D (2.8) BS05 MG N/A N/A P60405 39019034
    898231 9b00:2D (2.8) BS06 MG N/A N/A P60405 39019034
    898232 9b00:2E (2.8) BS01 rna N/A N/A Q5SHN8 39019034
    898233 9b00:2E (2.8) BS02 MG N/A N/A Q5SHN8 39019034
    898234 9b00:2E (2.8) BS03 MG N/A N/A Q5SHN8 39019034
    898235 9b00:2F (2.8) BS01 rna N/A N/A Q5SHN9 39019034
    898236 9b00:2F (2.8) BS02 MG N/A N/A Q5SHN9 39019034
    898237 9b00:2F (2.8) BS03 MG N/A N/A Q5SHN9 39019034
    898238 9b00:2F (2.8) BS04 MG N/A N/A Q5SHN9 39019034
    898239 9b00:2G (2.8) BS01 rna N/A N/A Q5SHQ0 39019034
    898240 9b00:2G (2.8) BS02 rna N/A N/A Q5SHQ0 39019034
    898241 9b00:2G (2.8) BS03 rna N/A N/A Q5SHQ0 39019034
    898242 9b00:2H (2.8) BS01 rna N/A N/A P0DOY8 39019034
    898243 9b00:2I (2.8) BS01 rna N/A N/A Q5SLQ1 39019034
    898244 9b00:2N (2.8) BS01 rna N/A N/A P60488 39019034
    898245 9b00:2O (2.8) BS01 rna N/A N/A Q5SHP8 39019034
    898246 9b00:2O (2.8) BS02 rna N/A N/A Q5SHP8 39019034
    898247 9b00:2O (2.8) BS03 MG N/A N/A Q5SHP8 39019034
    898248 9b00:2P (2.8) BS01 rna N/A N/A Q5SHQ7 39019034
    898249 9b00:2P (2.8) BS02 MG N/A N/A Q5SHQ7 39019034
    898250 9b00:2Q (2.8) BS01 rna N/A N/A P60489 39019034
    898251 9b00:2Q (2.8) BS02 rna N/A N/A P60489 39019034
    898252 9b00:2Q (2.8) BS03 rna N/A N/A P60489 39019034
    898253 9b00:2Q (2.8) BS04 MG N/A N/A P60489 39019034
    898254 9b00:2R (2.8) BS01 rna N/A N/A Q9Z9H5 39019034
    898255 9b00:2S (2.8) BS01 rna N/A N/A Q5SHQ4 39019034
    898256 9b00:2S (2.8) BS02 rna N/A N/A Q5SHQ4 39019034
    898257 9b00:2T (2.8) BS01 rna N/A N/A P60490 39019034
    898258 9b00:2T (2.8) BS02 rna N/A N/A P60490 39019034
    898259 9b00:2T (2.8) BS03 MG N/A N/A P60490 39019034
    898260 9b00:2U (2.8) BS01 rna N/A N/A P60491 39019034
    898261 9b00:2V (2.8) BS01 rna N/A N/A P60492 39019034
    898262 9b00:2V (2.8) BS02 MG N/A N/A P60492 39019034
    898263 9b00:2W (2.8) BS01 rna N/A N/A Q5SHP3 39019034
    898264 9b00:2W (2.8) BS02 MG N/A N/A Q5SHP3 39019034
    898265 9b00:2X (2.8) BS01 rna N/A N/A Q5SHP0 39019034
    898266 9b00:2X (2.8) BS02 MG N/A N/A Q5SHP0 39019034
    898267 9b00:2Y (2.8) BS01 rna N/A N/A Q5SHP9 39019034
    898268 9b00:2Y (2.8) BS02 ZN N/A N/A Q5SHP9 39019034
    898269 9b00:2Z (2.8) BS01 rna N/A N/A Q5SHZ1 39019034
    898270 9b00:2Z (2.8) BS02 rna N/A N/A Q5SHZ1 39019034
    898271 9b00:2Z (2.8) BS03 MG N/A N/A Q5SHZ1 39019034
    898272 9b00:2b (2.8) BS01 rna N/A N/A P80371 39019034
    898273 9b00:2c (2.8) BS01 rna N/A N/A P80372 39019034
    898274 9b00:2d (2.8) BS01 rna N/A N/A P80373 39019034
    898275 9b00:2d (2.8) BS02 MG N/A N/A P80373 39019034
    898276 9b00:2d (2.8) BS03 SF4 N/A N/A P80373 39019034
    898277 9b00:2e (2.8) BS01 rna N/A N/A Q5SHQ5 39019034
    898278 9b00:2e (2.8) BS02 MG N/A N/A Q5SHQ5 39019034
    898279 9b00:2f (2.8) BS01 rna N/A N/A Q5SLP8 39019034
    898280 9b00:2f (2.8) BS02 MG N/A N/A Q5SLP8 39019034
    898281 9b00:2g (2.8) BS01 rna N/A N/A P17291 39019034
    898282 9b00:2g (2.8) BS02 rna N/A N/A P17291 39019034
    898283 9b00:2h (2.8) BS01 rna N/A N/A P0DOY9 39019034
    898284 9b00:2i (2.8) BS01 rna N/A N/A P80374 39019034
    898285 9b00:2j (2.8) BS01 rna N/A N/A Q5SHN7 39019034
    898286 9b00:2j (2.8) BS02 MG N/A N/A Q5SHN7 39019034
    898287 9b00:2k (2.8) BS01 rna N/A N/A P80376 39019034
    898288 9b00:2k (2.8) BS02 MG N/A N/A P80376 39019034
    898289 9b00:2l (2.8) BS01 rna N/A N/A Q5SHN3 39019034
    898290 9b00:2l (2.8) BS02 MG N/A N/A Q5SHN3 39019034
    898291 9b00:2l (2.8) BS03 MG N/A N/A Q5SHN3 39019034
    898292 9b00:2m (2.8) BS01 rna N/A N/A P80377 39019034
    898293 9b00:2m (2.8) BS02 rna N/A N/A P80377 39019034
    898294 9b00:2n (2.8) BS01 rna N/A N/A P0DOY6 39019034
    898295 9b00:2n (2.8) BS02 ZN N/A N/A P0DOY6 39019034
    898296 9b00:2o (2.8) BS01 rna N/A N/A Q5SJ76 39019034
    898297 9b00:2o (2.8) BS02 rna N/A N/A Q5SJ76 39019034
    898298 9b00:2p (2.8) BS01 rna N/A N/A Q5SJH3 39019034
    898299 9b00:2q (2.8) BS01 rna N/A N/A P0DOY7 39019034
    898300 9b00:2q (2.8) BS02 MG N/A N/A P0DOY7 39019034
    898301 9b00:2r (2.8) BS01 rna N/A N/A Q5SLQ0 39019034
    898302 9b00:2s (2.8) BS01 rna N/A N/A Q5SHP2 39019034
    898303 9b00:2t (2.8) BS01 rna N/A N/A P80380 39019034
    898304 9b03:A (2.95) BS01 ADP 3.6.4.- GO:0000287 ... P68135 38843827
    898305 9b03:B (2.95) BS01 ADP 3.6.4.- GO:0000287 ... P68135 38843827
    898306 9b03:C (2.95) BS01 ADP 3.6.4.- GO:0000287 ... P68135 38843827
    898307 9b03:C (2.95) BS02 MG 3.6.4.- GO:0000287 ... P68135 38843827
    898308 9b03:D (2.95) BS01 ADP 3.6.4.- GO:0000287 ... P68135 38843827
    898309 9b03:E (2.95) BS01 ADP 3.6.4.- GO:0000287 ... P68135 38843827
    898310 9b03:F (2.95) BS01 ADP 3.6.4.- GO:0000287 ... P68135 38843827
    898311 9b0b:A (1.7) BS01 peptide N/A N/A Q96CV9 N/A
    898312 9b0b:B (1.7) BS01 peptide N/A N/A Q96CV9 N/A
    898313 9b0b:C (1.7) BS01 peptide N/A N/A Q96CV9 N/A
    898314 9b0b:D (1.7) BS01 peptide N/A N/A Q96CV9 N/A
    898315 9b0c:A (1.66) BS01 827 N/A N/A Q70KE6 39207862
    898316 9b0c:A (1.66) BS02 PMP N/A N/A Q70KE6 39207862
    898317 9b0e:A (3.19) BS01 ADP N/A N/A G0S273 38585770
    898318 9b0e:A (3.19) BS02 A1AH4 N/A N/A G0S273 38585770
    898319 9b0e:B (3.19) BS01 ADP N/A N/A G0S273 38585770
    898320 9b0e:B (3.19) BS02 A1AH4 N/A N/A G0S273 38585770
    898321 9b0i:A (3.02) BS01 ADP N/A N/A G0S273 38585770
    898322 9b0i:A (3.02) BS02 A1AH4 N/A N/A G0S273 38585770
    898323 9b0i:B (3.02) BS01 ADP N/A N/A G0S273 38585770
    898324 9b0i:B (3.02) BS02 A1AH4 N/A N/A G0S273 38585770
    898325 9b0k:A (3.03) BS01 ADP 3.6.4.- GO:0000287 ... P68135 38843827
    898326 9b0k:B (3.03) BS01 ADP 3.6.4.- GO:0000287 ... P68135 38843827
    898327 9b0k:C (3.03) BS01 ADP 3.6.4.- GO:0000287 ... P68135 38843827
    898328 9b0k:C (3.03) BS02 MG 3.6.4.- GO:0000287 ... P68135 38843827
    898329 9b0k:D (3.03) BS01 ADP 3.6.4.- GO:0000287 ... P68135 38843827
    898330 9b0k:E (3.03) BS01 ADP 3.6.4.- GO:0000287 ... P68135 38843827
    898331 9b0k:F (3.03) BS01 ADP 3.6.4.- GO:0000287 ... P68135 38843827
    898332 9b0z:A (2.41) BS01 peptide N/A N/A Q96CV9 N/A
    898333 9b0z:A (2.41) BS02 peptide N/A N/A Q96CV9 N/A
    898334 9b0z:B (2.41) BS01 peptide N/A N/A Q96CV9 N/A
    898335 9b0z:B (2.41) BS02 peptide N/A N/A Q96CV9 N/A
    898336 9b0z:G (2.41) BS01 peptide N/A N/A P0CG47 N/A
    898337 9b12:C (1.81) BS01 peptide N/A N/A Q96CV9 N/A
    898338 9b12:C (1.81) BS02 peptide N/A N/A Q96CV9 N/A
    898339 9b12:D (1.81) BS01 peptide N/A N/A Q96CV9 N/A
    898340 9b12:D (1.81) BS02 peptide N/A N/A Q96CV9 N/A
    898341 9b12:E (1.81) BS01 peptide N/A N/A Q96CV9 N/A
    898342 9b12:E (1.81) BS02 peptide N/A N/A Q96CV9 N/A
    898343 9b12:F (1.81) BS01 peptide N/A N/A Q96CV9 N/A
    898344 9b12:F (1.81) BS02 peptide N/A N/A Q96CV9 N/A
    898345 9b17:A (2.65) BS01 HEM N/A N/A P48775 39106326
    898346 9b17:A (2.65) BS02 A1AH9 N/A N/A P48775 39106326
    898347 9b17:A (2.65) BS03 ZIQ N/A N/A P48775 39106326
    898348 9b17:B (2.65) BS01 HEM N/A N/A P48775 39106326
    898349 9b17:B (2.65) BS02 A1AH9 N/A N/A P48775 39106326
    898350 9b17:B (2.65) BS03 ZIQ N/A N/A P48775 39106326
    898351 9b17:C (2.65) BS01 HEM N/A N/A P48775 39106326
    898352 9b17:C (2.65) BS02 A1AH9 N/A N/A P48775 39106326
    898353 9b17:C (2.65) BS03 ZIQ N/A N/A P48775 39106326
    898354 9b17:C (2.65) BS04 A1AH9 N/A N/A P48775 39106326
    898355 9b17:D (2.65) BS01 A1AH9 N/A N/A P48775 39106326
    898356 9b17:D (2.65) BS02 HEM N/A N/A P48775 39106326
    898357 9b17:D (2.65) BS03 A1AH9 N/A N/A P48775 39106326
    898358 9b17:D (2.65) BS04 ZIQ N/A N/A P48775 39106326
    898359 9b1g:A (2.7) BS01 A1AIK N/A N/A Q96S37 39245778
    898360 9b1h:A (2.9) BS01 A1AIL N/A N/A Q96S37 39245778
    898361 9b1i:A (3.7) BS01 A1AIJ N/A N/A Q96S37 39245778
    898362 9b1j:A (3.0) BS01 URC N/A N/A Q96S37 39245778
    898363 9b1k:A (3.3) BS01 URC N/A N/A Q96S37 39245778
    898364 9b1l:A (3.1) BS01 URC N/A N/A Q96S37 39245778
    898365 9b1m:A (3.0) BS01 VGL N/A N/A Q96S37 39245778
    898366 9b1n:A (3.1) BS01 VGL N/A N/A Q96S37 39245778
    898367 9b1o:A (3.1) BS01 VGL N/A N/A Q96S37 39245778
    898368 9b1q:A (2.624) BS01 HEM N/A N/A P48775 39106326
    898369 9b1q:A (2.624) BS02 A1AH8 N/A N/A P48775 39106326
    898370 9b1q:A (2.624) BS03 ZIQ N/A N/A P48775 39106326
    898371 9b1q:A (2.624) BS04 A1AH8 N/A N/A P48775 39106326
    898372 9b1q:B (2.624) BS01 A1AH8 N/A N/A P48775 39106326
    898373 9b1q:B (2.624) BS02 HEM N/A N/A P48775 39106326
    898374 9b1q:B (2.624) BS03 A1AH8 N/A N/A P48775 39106326
    898375 9b1q:B (2.624) BS04 ZIQ N/A N/A P48775 39106326
    898376 9b1q:C (2.624) BS01 HEM N/A N/A P48775 39106326
    898377 9b1q:C (2.624) BS02 A1AH8 N/A N/A P48775 39106326
    898378 9b1q:C (2.624) BS03 ZIQ N/A N/A P48775 39106326
    898379 9b1q:C (2.624) BS04 A1AH8 N/A N/A P48775 39106326
    898380 9b1q:D (2.624) BS01 A1AH8 N/A N/A P48775 39106326
    898381 9b1q:D (2.624) BS02 HEM N/A N/A P48775 39106326
    898382 9b1q:D (2.624) BS03 A1AH8 N/A N/A P48775 39106326
    898383 9b1q:D (2.624) BS04 ZIQ N/A N/A P48775 39106326
    898384 9b1u:A (1.46) BS01 PQQ N/A N/A B7KXB5 39116128
    898385 9b1v:A (1.55) BS01 PQQ N/A N/A B7KXB5 39116128
    898386 9b20:A (1.55) BS01 AMP 3.6.1.13 GO:0000166 ... A0A0H3GVQ7 N/A
    898387 9b20:A (1.55) BS02 MG 3.6.1.13 GO:0000166 ... A0A0H3GVQ7 N/A
    898388 9b20:A (1.55) BS03 AMP 3.6.1.13 GO:0000166 ... A0A0H3GVQ7 N/A
    898389 9b20:B (1.55) BS01 AMP 3.6.1.13 GO:0000166 ... A0A0H3GVQ7 N/A
    898390 9b20:B (1.55) BS02 AMP 3.6.1.13 GO:0000166 ... A0A0H3GVQ7 N/A
    898391 9b20:B (1.55) BS03 MG 3.6.1.13 GO:0000166 ... A0A0H3GVQ7 N/A
    898392 9b20:B (1.55) BS04 MG 3.6.1.13 GO:0000166 ... A0A0H3GVQ7 N/A
    898393 9b21:A (1.6) BS01 AR6 3.6.1.13 GO:0000166 ... A0A0H3GVQ7 N/A
    898394 9b21:A (1.6) BS02 MG 3.6.1.13 GO:0000166 ... A0A0H3GVQ7 N/A
    898395 9b21:A (1.6) BS03 MG 3.6.1.13 GO:0000166 ... A0A0H3GVQ7 N/A
    898396 9b21:A (1.6) BS04 AR6 3.6.1.13 GO:0000166 ... A0A0H3GVQ7 N/A
    898397 9b21:B (1.6) BS01 AR6 3.6.1.13 GO:0000166 ... A0A0H3GVQ7 N/A
    898398 9b21:B (1.6) BS02 AR6 3.6.1.13 GO:0000166 ... A0A0H3GVQ7 N/A
    898399 9b21:B (1.6) BS03 MG 3.6.1.13 GO:0000166 ... A0A0H3GVQ7 N/A
    898400 9b21:B (1.6) BS04 MG 3.6.1.13 GO:0000166 ... A0A0H3GVQ7 N/A
    Reference:
    • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023)(download the PDF file).
    • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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