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BioLiP Library
Download all results in tab-seperated text for 903398 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    897601 9at2:A (2.25) BS04 A1AF5 N/A N/A P48775 39106326
    897602 9at2:B (2.25) BS01 A1AF5 N/A N/A P48775 39106326
    897603 9at2:B (2.25) BS02 HEM N/A N/A P48775 39106326
    897604 9at2:B (2.25) BS03 ZIQ N/A N/A P48775 39106326
    897605 9at2:B (2.25) BS04 A1AF5 N/A N/A P48775 39106326
    897606 9at2:C (2.25) BS01 HEM N/A N/A P48775 39106326
    897607 9at2:C (2.25) BS02 ZIQ N/A N/A P48775 39106326
    897608 9at2:C (2.25) BS03 A1AF5 N/A N/A P48775 39106326
    897609 9at2:C (2.25) BS04 A1AF5 N/A N/A P48775 39106326
    897610 9at2:D (2.25) BS01 A1AF5 N/A N/A P48775 39106326
    897611 9at2:D (2.25) BS02 HEM N/A N/A P48775 39106326
    897612 9at2:D (2.25) BS03 ZIQ N/A N/A P48775 39106326
    897613 9at2:D (2.25) BS04 A1AF5 N/A N/A P48775 39106326
    897614 9at3:A (1.7) BS01 A1AGK N/A N/A P0DTD1 38953866
    897615 9at3:A (1.7) BS02 A1AGL N/A N/A P0DTD1 38953866
    897616 9at3:B (1.7) BS01 A1AGK N/A N/A P0DTD1 38953866
    897617 9at3:B (1.7) BS02 A1AGL N/A N/A P0DTD1 38953866
    897618 9at4:A (1.35) BS01 A1AGN N/A N/A P0DTD1 38953866
    897619 9at4:A (1.35) BS02 A1AGM N/A N/A P0DTD1 38953866
    897620 9at4:B (1.35) BS01 A1AGN N/A N/A P0DTD1 38953866
    897621 9at4:B (1.35) BS02 A1AGM N/A N/A P0DTD1 38953866
    897622 9at5:A (1.45) BS01 A1AGO N/A N/A P0DTD1 38953866
    897623 9at5:A (1.45) BS02 A1AGP N/A N/A P0DTD1 38953866
    897624 9at5:B (1.45) BS01 A1AGO N/A N/A P0DTD1 38953866
    897625 9at5:B (1.45) BS02 A1AGP N/A N/A P0DTD1 38953866
    897626 9at6:A (1.4) BS01 A1AGQ N/A N/A P0DTD1 38953866
    897627 9at6:A (1.4) BS02 A1AGR N/A N/A P0DTD1 38953866
    897628 9at6:B (1.4) BS01 A1AGR N/A N/A P0DTD1 38953866
    897629 9at6:B (1.4) BS02 A1AGQ N/A N/A P0DTD1 38953866
    897630 9at7:A (1.7) BS01 A1AGS N/A N/A P0DTD1 38953866
    897631 9at7:A (1.7) BS02 A1AGT N/A N/A P0DTD1 38953866
    897632 9at7:B (1.7) BS01 A1AGS N/A N/A P0DTD1 38953866
    897633 9at7:B (1.7) BS02 A1AGT N/A N/A P0DTD1 38953866
    897634 9at8:F (3.6) BS01 peptide N/A N/A Q786F3 38935733
    897635 9at8:L (3.6) BS01 peptide N/A N/A N/A 38935733
    897636 9at9:B (1.34) BS01 MAN N/A N/A B0LF88 N/A
    897637 9ata:A (1.65) BS01 A1AGG N/A N/A K9N638 38953866
    897638 9ata:A (1.65) BS02 A1AGH N/A N/A K9N638 38953866
    897639 9ata:B (1.65) BS01 A1AGG N/A N/A K9N638 38953866
    897640 9ata:B (1.65) BS02 A1AGH N/A N/A K9N638 38953866
    897641 9atc:B (2.4) BS01 ZN 2.1.3.2 GO:0005515 ... P0A7F3 9829701
    897642 9atd:A (1.8) BS01 A1AGL N/A N/A K9N638 38953866
    897643 9atd:A (1.8) BS02 A1AGK N/A N/A K9N638 38953866
    897644 9ate:A (1.85) BS01 A1AGN N/A N/A K9N638 38953866
    897645 9ate:A (1.85) BS02 A1AGM N/A N/A K9N638 38953866
    897646 9ate:B (1.85) BS01 A1AGN N/A N/A K9N638 38953866
    897647 9ate:B (1.85) BS02 A1AGM N/A N/A K9N638 38953866
    897648 9atf:A (1.5) BS01 A1AGP N/A N/A K9N638 38953866
    897649 9atf:A (1.5) BS02 A1AGO N/A N/A K9N638 38953866
    897650 9atg:A (1.75) BS01 A1AGT N/A N/A K9N638 38953866
    897651 9atg:A (1.75) BS02 A1AGS N/A N/A K9N638 38953866
    897652 9ath:A (1.65) BS01 A1AGR N/A N/A K9N638 38953866
    897653 9ath:A (1.65) BS02 A1AGQ N/A N/A K9N638 38953866
    897654 9ath:B (1.65) BS01 A1AGR N/A N/A K9N638 38953866
    897655 9ath:B (1.65) BS02 A1AGQ N/A N/A K9N638 38953866
    897656 9ati:A (1.6) BS01 A1AGV N/A N/A K9N638 38953866
    897657 9ati:A (1.6) BS02 A1AGU N/A N/A K9N638 38953866
    897658 9atj:A (1.4) BS01 A1AGJ N/A N/A K9N638 38953866
    897659 9atj:A (1.4) BS02 A1AGI N/A N/A K9N638 38953866
    897660 9atk:A (2.11) BS01 FUC 3.4.21.37 GO:0000122 ... P08246 N/A
    897661 9atk:D (2.11) BS01 FUC 3.4.21.37 GO:0000122 ... P08246 N/A
    897662 9atk:G (2.11) BS01 FUC 3.4.21.37 GO:0000122 ... P08246 N/A
    897663 9atk:J (2.11) BS01 FUC 3.4.21.37 GO:0000122 ... P08246 N/A
    897664 9atn:A (-1.00) BS01 peptide N/A N/A O14686 38849395
    897665 9atn:A (-1.00) BS02 ZN N/A N/A O14686 38849395
    897666 9atn:A (-1.00) BS03 ZN N/A N/A O14686 38849395
    897667 9atn:A (-1.00) BS04 ZN N/A N/A O14686 38849395
    897668 9atn:A (-1.00) BS05 ZN N/A N/A O14686 38849395
    897669 9ats:A (2.5) BS01 A1AGX N/A N/A K9N638 38953866
    897670 9att:A (1.7) BS01 A1AGZ N/A N/A K9N638 38953866
    897671 9att:A (1.7) BS02 A1AGY N/A N/A K9N638 38953866
    897672 9att:B (1.7) BS01 A1AGZ N/A N/A K9N638 38953866
    897673 9att:B (1.7) BS02 A1AGY N/A N/A K9N638 38953866
    897674 9atu:A (2.05) BS01 FUC 3.4.21.37 GO:0000122 ... P08246 N/A
    897675 9atu:D (2.05) BS01 FUC 3.4.21.37 GO:0000122 ... P08246 N/A
    897676 9atu:F (2.05) BS01 FUC 3.4.21.37 GO:0000122 ... P08246 N/A
    897677 9au3:A (1.35) BS01 PMP N/A N/A Q70KE6 39207862
    897678 9au3:A (1.35) BS02 GET N/A N/A Q70KE6 39207862
    897679 9auc:R (2.4) BS01 Y01 ? GO:0001503 ... P30988 38603770
    897680 9auc:R (2.4) BS02 Y01 ? GO:0001503 ... P30988 38603770
    897681 9aue:A (1.46) BS01 PMP N/A N/A Q70KE6 39207862
    897682 9auj:A (1.486) BS01 4WI N/A N/A P0DTD1 39047088
    897683 9auk:A (1.88) BS01 4WI N/A N/A P0DTD1 39047088
    897684 9auk:B (1.88) BS01 4WI N/A N/A P0DTD1 39047088
    897685 9aul:A (2.421) BS01 4WI N/A N/A P0DTD1 39047088
    897686 9aum:A (1.539) BS01 4WI N/A N/A P0DTD1 39047088
    897687 9aur:H (1.57) BS01 rna N/A N/A N/A 39178230
    897688 9aur:L (1.57) BS01 rna N/A N/A N/A 39178230
    897689 9aus:A (2.07) BS01 rna N/A N/A N/A 39178230
    897690 9aus:B (2.07) BS01 rna N/A N/A N/A 39178230
    897691 9aus:H (2.07) BS01 rna N/A N/A N/A 39178230
    897692 9aus:L (2.07) BS01 rna N/A N/A N/A 39178230
    897693 9av7:A (2.1) BS01 ANP 2.7.11.1 GO:0004672 ... A2F9N1 N/A
    897694 9ava:A (2.3) BS01 A1AG1 3.1.11.2 GO:0003676 ... Q9NSU2 N/A
    897695 9ava:B (2.3) BS01 A1AG1 3.1.11.2 GO:0003676 ... Q9NSU2 N/A
    897696 9ava:C (2.3) BS01 A1AG1 3.1.11.2 GO:0003676 ... Q9NSU2 N/A
    897697 9ava:D (2.3) BS01 A1AG1 3.1.11.2 GO:0003676 ... Q9NSU2 N/A
    897698 9ava:E (2.3) BS01 A1AG1 3.1.11.2 GO:0003676 ... Q9NSU2 N/A
    897699 9ava:F (2.3) BS01 A1AG1 3.1.11.2 GO:0003676 ... Q9NSU2 N/A
    897700 9ava:F (2.3) BS02 A1AG1 3.1.11.2 GO:0003676 ... Q9NSU2 N/A
    897701 9ava:G (2.3) BS01 A1AG1 3.1.11.2 GO:0003676 ... Q9NSU2 N/A
    897702 9ava:H (2.3) BS01 A1AG1 3.1.11.2 GO:0003676 ... Q9NSU2 N/A
    897703 9ava:I (2.3) BS01 A1AG1 3.1.11.2 GO:0003676 ... Q9NSU2 N/A
    897704 9ava:J (2.3) BS01 A1AG1 3.1.11.2 GO:0003676 ... Q9NSU2 N/A
    897705 9ava:K (2.3) BS01 A1AG1 3.1.11.2 GO:0003676 ... Q9NSU2 N/A
    897706 9ava:L (2.3) BS01 A1AG1 3.1.11.2 GO:0003676 ... Q9NSU2 N/A
    897707 9avg:Q (3.6) BS01 TCR ? GO:0004930 ... P41180 38632411
    897708 9avg:Q (3.6) BS02 CA ? GO:0004930 ... P41180 38632411
    897709 9avg:Q (3.6) BS03 CA ? GO:0004930 ... P41180 38632411
    897710 9avg:Q (3.6) BS04 9IG ? GO:0004930 ... P41180 38632411
    897711 9avg:Q (3.6) BS05 Y01 ? GO:0004930 ... P41180 38632411
    897712 9avg:Q (3.6) BS06 A1AF7 ? GO:0004930 ... P41180 38632411
    897713 9avg:R (3.6) BS01 Y01 ? GO:0004930 ... P41180 38632411
    897714 9avg:R (3.6) BS02 TCR ? GO:0004930 ... P41180 38632411
    897715 9avg:R (3.6) BS03 CA ? GO:0004930 ... P41180 38632411
    897716 9avg:R (3.6) BS04 CA ? GO:0004930 ... P41180 38632411
    897717 9avg:R (3.6) BS05 CA ? GO:0004930 ... P41180 38632411
    897718 9avg:R (3.6) BS06 9IG ? GO:0004930 ... P41180 38632411
    897719 9avg:R (3.6) BS07 A1AF7 ? GO:0004930 ... P41180 38632411
    897720 9avl:Q (3.8) BS01 TCR ? GO:0004930 ... P41180 38632411
    897721 9avl:Q (3.8) BS02 CA ? GO:0004930 ... P41180 38632411
    897722 9avl:Q (3.8) BS03 9IG ? GO:0004930 ... P41180 38632411
    897723 9avl:Q (3.8) BS04 Y01 ? GO:0004930 ... P41180 38632411
    897724 9avl:Q (3.8) BS05 A1AF7 ? GO:0004930 ... P41180 38632411
    897725 9avl:R (3.8) BS01 TCR ? GO:0004930 ... P41180 38632411
    897726 9avl:R (3.8) BS02 CA ? GO:0004930 ... P41180 38632411
    897727 9avl:R (3.8) BS03 CA ? GO:0004930 ... P41180 38632411
    897728 9avl:R (3.8) BS04 9IG ? GO:0004930 ... P41180 38632411
    897729 9avl:R (3.8) BS05 A1AF7 ? GO:0004930 ... P41180 38632411
    897730 9avq:A (2.58) BS01 4WI 2.1.1.56
    2.1.1.57
    2.7.7.48
    2.7.7.50
    3.1.13.-
    3.4.19.12
    3.4.22.-
    3.4.22.69
    3.6.4.12
    3.6.4.13
    4.6.1.-    		 GO:0008233 ... P0DTD1 N/A
    897731 9avt:C (1.5) BS01 ZN N/A N/A Q9NYJ8 N/A
    897732 9avu:A (2.45) BS01 MAN N/A GO:0003009 ... P02709 39085615
    897733 9avu:A (2.45) BS02 ACH N/A GO:0003009 ... P02709 39085615
    897734 9avu:B (2.45) BS01 ACH N/A GO:0005886 ... P13536 39085615
    897735 9avu:C (2.45) BS01 MAN N/A GO:0003009 ... P02709 39085615
    897736 9avu:C (2.45) BS02 ACH N/A GO:0003009 ... P02709 39085615
    897737 9avu:D (2.45) BS01 ACH N/A GO:0005886 ... P04759 39085615
    897738 9avv:C (2.09) BS01 MAN N/A GO:0003009 ... P02709 39085615
    897739 9avv:D (2.09) BS01 MAN N/A GO:0005886 ... P04759 39085615
    897740 9avv:F (2.09) BS01 MAN N/A N/A N/A 39085615
    897741 9avv:G (2.09) BS01 MAN N/A N/A N/A 39085615
    897742 9avw:C (1.747) BS01 ZN N/A N/A Q9NYJ8 N/A
    897743 9awj:A (2.45) BS01 MAN N/A GO:0003009 ... P02709 39085615
    897744 9awj:A (2.45) BS02 ACH N/A GO:0003009 ... P02709 39085615
    897745 9awj:B (2.45) BS01 ACH N/A GO:0005886 ... P02715 39085615
    897746 9awj:C (2.45) BS01 MAN N/A GO:0003009 ... P02709 39085615
    897747 9awj:C (2.45) BS02 ACH N/A GO:0003009 ... P02709 39085615
    897748 9awj:D (2.45) BS01 ACH N/A GO:0005886 ... P04759 39085615
    897749 9awk:A (2.14) BS01 MAN N/A GO:0003009 ... P02709 39085615
    897750 9awk:C (2.14) BS01 MAN N/A GO:0003009 ... P02709 39085615
    897751 9awk:D (2.14) BS01 MAN N/A GO:0005886 ... P04759 39085615
    897752 9awk:F (2.14) BS01 MAN N/A N/A N/A 39085615
    897753 9awk:G (2.14) BS01 MAN N/A N/A N/A 39085615
    897754 9ax6:A (1.65) BS01 GNP 3.6.5.2 GO:0003924 ... P01116 38593348
    897755 9ax6:A (1.65) BS02 MG 3.6.5.2 GO:0003924 ... P01116 38593348
    897756 9ax6:A (1.65) BS03 A1AHB 3.6.5.2 GO:0003924 ... P01116 38593348
    897757 9ax6:B (1.65) BS01 GNP 3.6.5.2 GO:0003924 ... P01116 38593348
    897758 9ax6:B (1.65) BS02 MG 3.6.5.2 GO:0003924 ... P01116 38593348
    897759 9ax6:B (1.65) BS03 A1AHB 3.6.5.2 GO:0003924 ... P01116 38593348
    897760 9ax6:C (1.65) BS01 A1AHB 5.2.1.8 GO:0000413 ... P62937 38593348
    897761 9ax6:D (1.65) BS01 A1AHB 5.2.1.8 GO:0000413 ... P62937 38593348
    897762 9ax7:0 (2.63) BS01 rna N/A N/A C3SME7 39222680
    897763 9ax7:1 (2.63) BS01 rna N/A N/A B7MGC4 39222680
    897764 9ax7:2 (2.63) BS01 rna N/A N/A P0A7Q1 39222680
    897765 9ax7:3 (2.63) BS01 rna N/A N/A A0A0E2L017 39222680
    897766 9ax7:3 (2.63) BS02 ZN N/A N/A A0A0E2L017 39222680
    897767 9ax7:4 (2.63) BS01 rna N/A N/A P0A7N0 39222680
    897768 9ax7:4 (2.63) BS02 ZN N/A N/A P0A7N0 39222680
    897769 9ax7:B (2.63) BS01 rna N/A N/A C3TPN2 39222680
    897770 9ax7:C (2.63) BS01 rna N/A N/A B7MCS9 39222680
    897771 9ax7:D (2.63) BS01 rna N/A N/A P0A7V8 39222680
    897772 9ax7:E (2.63) BS01 rna N/A N/A P0A7W1 39222680
    897773 9ax7:F (2.63) BS01 rna N/A N/A P02358 39222680
    897774 9ax7:G (2.63) BS01 rna N/A N/A P02359 39222680
    897775 9ax7:G (2.63) BS02 rna N/A N/A P02359 39222680
    897776 9ax7:H (2.63) BS01 rna N/A N/A C3SR12 39222680
    897777 9ax7:I (2.63) BS01 rna N/A N/A C3SRY2 39222680
    897778 9ax7:I (2.63) BS02 rna N/A N/A C3SRY2 39222680
    897779 9ax7:J (2.63) BS01 rna N/A N/A C3SQT7 39222680
    897780 9ax7:K (2.63) BS01 rna N/A N/A C3SR57 39222680
    897781 9ax7:K (2.63) BS02 IAS N/A N/A C3SR57 39222680
    897782 9ax7:L (2.63) BS01 rna N/A N/A A0A0F1AUC4 39222680
    897783 9ax7:M (2.63) BS01 rna N/A N/A A0A7U9IV78 39222680
    897784 9ax7:M (2.63) BS02 rna N/A N/A A0A7U9IV78 39222680
    897785 9ax7:N (2.63) BS01 rna N/A N/A A0A2X1PQW4 39222680
    897786 9ax7:O (2.63) BS01 rna N/A N/A C3SSQ7 39222680
    897787 9ax7:O (2.63) BS02 rna N/A N/A C3SSQ7 39222680
    897788 9ax7:P (2.63) BS01 rna N/A N/A C3SYP2 39222680
    897789 9ax7:Q (2.63) BS01 rna N/A N/A C3SQY7 39222680
    897790 9ax7:R (2.63) BS01 rna N/A N/A A0A0E2KXL3 39222680
    897791 9ax7:S (2.63) BS01 rna N/A N/A C3SQW2 39222680
    897792 9ax7:T (2.63) BS01 rna N/A N/A C3TRH7 39222680
    897793 9ax7:U (2.63) BS01 rna N/A N/A A0A0E2L2J1 39222680
    897794 9ax7:c (2.63) BS01 rna N/A N/A P60422 39222680
    897795 9ax7:d (2.63) BS01 rna N/A N/A C3SQU2 39222680
    897796 9ax7:e (2.63) BS01 rna N/A N/A A1AGK6 39222680
    897797 9ax7:f (2.63) BS01 rna N/A N/A A0A140N5A3 39222680
    897798 9ax7:f (2.63) BS02 rna N/A N/A A0A140N5A3 39222680
    897799 9ax7:f (2.63) BS03 rna N/A N/A A0A140N5A3 39222680
    897800 9ax7:g (2.63) BS01 rna N/A N/A C3SR17 39222680
    Reference:
    • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023)(download the PDF file).
    • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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