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BioLiP Library
Download all results in tab-seperated text for 903398 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    897201 8zle:A (3.35) BS01 CLR N/A N/A N/A 39033175
    897202 8zle:A (3.35) BS02 Y01 N/A N/A N/A 39033175
    897203 8zle:A (3.35) BS03 PT5 N/A N/A N/A 39033175
    897204 8zle:A (3.35) BS04 PT5 N/A N/A N/A 39033175
    897205 8zle:B (3.35) BS01 PT5 N/A N/A N/A 39033175
    897206 8zle:B (3.35) BS02 CLR N/A N/A N/A 39033175
    897207 8zle:B (3.35) BS03 Y01 N/A N/A N/A 39033175
    897208 8zli:A (3.4) BS01 A1L13 N/A N/A P37840 39172784
    897209 8zli:B (3.4) BS01 A1L13 N/A N/A P37840 39172784
    897210 8zli:C (3.4) BS01 A1L13 N/A N/A P37840 39172784
    897211 8zli:D (3.4) BS01 A1L13 N/A N/A P37840 39172784
    897212 8zli:E (3.4) BS01 A1L13 N/A N/A P37840 39172784
    897213 8zli:E (3.4) BS02 A1L13 N/A N/A P37840 39172784
    897214 8zli:E (3.4) BS03 A1L13 N/A N/A P37840 39172784
    897215 8zli:F (3.4) BS01 A1L13 N/A N/A P37840 39172784
    897216 8zli:F (3.4) BS02 A1L13 N/A N/A P37840 39172784
    897217 8zli:F (3.4) BS03 A1L13 N/A N/A P37840 39172784
    897218 8zli:I (3.4) BS01 A1L13 N/A N/A P37840 39172784
    897219 8zli:J (3.4) BS01 A1L13 N/A N/A P37840 39172784
    897220 8zli:J (3.4) BS02 A1L13 N/A N/A P37840 39172784
    897221 8zli:K (3.4) BS01 A1L13 N/A N/A P37840 39172784
    897222 8zli:L (3.4) BS01 A1L13 N/A N/A P37840 39172784
    897223 8zli:L (3.4) BS02 A1L13 N/A N/A P37840 39172784
    897224 8zlo:A (3.1) BS01 1KI N/A N/A P37840 39172784
    897225 8zlo:A (3.1) BS02 1KI N/A N/A P37840 39172784
    897226 8zlo:A (3.1) BS03 1KI N/A N/A P37840 39172784
    897227 8zlo:B (3.1) BS01 1KI N/A N/A P37840 39172784
    897228 8zlo:C (3.1) BS01 1KI N/A N/A P37840 39172784
    897229 8zlo:C (3.1) BS02 1KI N/A N/A P37840 39172784
    897230 8zlo:C (3.1) BS03 1KI N/A N/A P37840 39172784
    897231 8zlo:D (3.1) BS01 1KI N/A N/A P37840 39172784
    897232 8zlo:E (3.1) BS01 1KI N/A N/A P37840 39172784
    897233 8zlo:E (3.1) BS02 1KI N/A N/A P37840 39172784
    897234 8zlo:E (3.1) BS03 1KI N/A N/A P37840 39172784
    897235 8zlo:F (3.1) BS01 1KI N/A N/A P37840 39172784
    897236 8zlo:F (3.1) BS02 1KI N/A N/A P37840 39172784
    897237 8zlo:F (3.1) BS03 1KI N/A N/A P37840 39172784
    897238 8zlo:G (3.1) BS01 1KI N/A N/A P37840 39172784
    897239 8zlo:G (3.1) BS02 1KI N/A N/A P37840 39172784
    897240 8zlo:G (3.1) BS03 1KI N/A N/A P37840 39172784
    897241 8zlo:G (3.1) BS04 1KI N/A N/A P37840 39172784
    897242 8zlo:H (3.1) BS01 1KI N/A N/A P37840 39172784
    897243 8zlo:H (3.1) BS02 1KI N/A N/A P37840 39172784
    897244 8zlo:H (3.1) BS03 1KI N/A N/A P37840 39172784
    897245 8zlo:I (3.1) BS01 1KI N/A N/A P37840 39172784
    897246 8zlo:I (3.1) BS02 1KI N/A N/A P37840 39172784
    897247 8zlo:I (3.1) BS03 1KI N/A N/A P37840 39172784
    897248 8zlo:I (3.1) BS04 1KI N/A N/A P37840 39172784
    897249 8zlo:J (3.1) BS01 1KI N/A N/A P37840 39172784
    897250 8zlo:J (3.1) BS02 1KI N/A N/A P37840 39172784
    897251 8zlo:J (3.1) BS03 1KI N/A N/A P37840 39172784
    897252 8zlo:O (3.1) BS01 1KI N/A N/A P37840 39172784
    897253 8zlo:T (3.1) BS01 1KI N/A N/A P37840 39172784
    897254 8zly:A (1.89) BS01 FBP N/A GO:0004743 ... Q8DQ84 39009072
    897255 8zly:A (1.89) BS02 MG N/A GO:0004743 ... Q8DQ84 39009072
    897256 8zly:A (1.89) BS03 UDP N/A GO:0004743 ... Q8DQ84 39009072
    897257 8zly:A (1.89) BS04 OXL N/A GO:0004743 ... Q8DQ84 39009072
    897258 8zly:B (1.89) BS01 FBP N/A GO:0004743 ... Q8DQ84 39009072
    897259 8zly:B (1.89) BS02 MG N/A GO:0004743 ... Q8DQ84 39009072
    897260 8zly:B (1.89) BS03 UDP N/A GO:0004743 ... Q8DQ84 39009072
    897261 8zly:B (1.89) BS04 OXL N/A GO:0004743 ... Q8DQ84 39009072
    897262 8zly:C (1.89) BS01 FBP N/A GO:0004743 ... Q8DQ84 39009072
    897263 8zly:C (1.89) BS02 MG N/A GO:0004743 ... Q8DQ84 39009072
    897264 8zly:C (1.89) BS03 UDP N/A GO:0004743 ... Q8DQ84 39009072
    897265 8zly:C (1.89) BS04 OXL N/A GO:0004743 ... Q8DQ84 39009072
    897266 8zly:D (1.89) BS01 FBP N/A GO:0004743 ... Q8DQ84 39009072
    897267 8zly:D (1.89) BS02 MG N/A GO:0004743 ... Q8DQ84 39009072
    897268 8zly:D (1.89) BS03 UDP N/A GO:0004743 ... Q8DQ84 39009072
    897269 8zly:D (1.89) BS04 OXL N/A GO:0004743 ... Q8DQ84 39009072
    897270 8zly:E (1.89) BS01 FBP N/A GO:0004743 ... Q8DQ84 39009072
    897271 8zly:E (1.89) BS02 MG N/A GO:0004743 ... Q8DQ84 39009072
    897272 8zly:E (1.89) BS03 UDP N/A GO:0004743 ... Q8DQ84 39009072
    897273 8zly:E (1.89) BS04 OXL N/A GO:0004743 ... Q8DQ84 39009072
    897274 8zly:F (1.89) BS01 FBP N/A GO:0004743 ... Q8DQ84 39009072
    897275 8zly:F (1.89) BS02 MG N/A GO:0004743 ... Q8DQ84 39009072
    897276 8zly:F (1.89) BS03 UDP N/A GO:0004743 ... Q8DQ84 39009072
    897277 8zly:F (1.89) BS04 OXL N/A GO:0004743 ... Q8DQ84 39009072
    897278 8zly:G (1.89) BS01 FBP N/A GO:0004743 ... Q8DQ84 39009072
    897279 8zly:G (1.89) BS02 MG N/A GO:0004743 ... Q8DQ84 39009072
    897280 8zly:G (1.89) BS03 UDP N/A GO:0004743 ... Q8DQ84 39009072
    897281 8zly:G (1.89) BS04 OXL N/A GO:0004743 ... Q8DQ84 39009072
    897282 8zly:H (1.89) BS01 FBP N/A GO:0004743 ... Q8DQ84 39009072
    897283 8zly:H (1.89) BS02 MG N/A GO:0004743 ... Q8DQ84 39009072
    897284 8zly:H (1.89) BS03 OXL N/A GO:0004743 ... Q8DQ84 39009072
    897285 8zlz:B (1.67) BS01 peptide N/A N/A Q8YXC3 39172695
    897286 8zm1:A (2.35) BS01 A1L16 N/A GO:0004672 ... Q15119 38844173
    897287 8zm2:A (2.34) BS01 A1L17 N/A GO:0004672 ... Q15119 38844173
    897288 8zm4:A (1.4) BS01 ZN 3.4.24.27 N/A P00800 N/A
    897289 8zm4:A (1.4) BS02 CA 3.4.24.27 N/A P00800 N/A
    897290 8zm4:A (1.4) BS03 CA 3.4.24.27 N/A P00800 N/A
    897291 8zm4:A (1.4) BS04 CA 3.4.24.27 N/A P00800 N/A
    897292 8zm4:A (1.4) BS05 CA 3.4.24.27 N/A P00800 N/A
    897293 8zm4:A (1.4) BS06 ILE 3.4.24.27 N/A P00800 N/A
    897294 8zm4:A (1.4) BS07 LYS 3.4.24.27 N/A P00800 N/A
    897295 8zm5:A (1.4) BS01 ILE 3.4.24.27 N/A P00800 N/A
    897296 8zm5:A (1.4) BS02 LYS 3.4.24.27 N/A P00800 N/A
    897297 8zm5:A (1.4) BS03 ZN 3.4.24.27 N/A P00800 N/A
    897298 8zm5:A (1.4) BS04 CA 3.4.24.27 N/A P00800 N/A
    897299 8zm5:A (1.4) BS05 CA 3.4.24.27 N/A P00800 N/A
    897300 8zm5:A (1.4) BS06 CA 3.4.24.27 N/A P00800 N/A
    897301 8zm5:A (1.4) BS07 CA 3.4.24.27 N/A P00800 N/A
    897302 8zm6:A (1.4) BS01 ILE 3.4.24.27 N/A P00800 N/A
    897303 8zm6:A (1.4) BS02 LYS 3.4.24.27 N/A P00800 N/A
    897304 8zm6:A (1.4) BS03 ZN 3.4.24.27 N/A P00800 N/A
    897305 8zm6:A (1.4) BS04 CA 3.4.24.27 N/A P00800 N/A
    897306 8zm6:A (1.4) BS05 CA 3.4.24.27 N/A P00800 N/A
    897307 8zm6:A (1.4) BS06 CA 3.4.24.27 N/A P00800 N/A
    897308 8zm6:A (1.4) BS07 CA 3.4.24.27 N/A P00800 N/A
    897309 8zmf:A (3.6) BS01 A1L10 N/A N/A P0ABE7
    P28335    		 39137033
    897310 8zmg:A (3.4) BS01 A1L11 N/A N/A P0ABE7
    P28223    		 39137033
    897311 8zmg:B (3.4) BS01 A1L11 N/A N/A P0ABE7
    P28223    		 39137033
    897312 8zmo:A (1.45) BS01 peptide N/A N/A N/A N/A
    897313 8zmo:A (1.45) BS02 peptide N/A N/A N/A N/A
    897314 8zmo:C (1.45) BS01 peptide N/A N/A N/A N/A
    897315 8zmo:E (1.45) BS01 peptide N/A N/A N/A N/A
    897316 8zmr:A (3.5) BS01 A1LWL N/A GO:0005277 ... P0AEX9
    Q16572    		 38862671
    897317 8zmv:B (1.45) BS01 peptide N/A N/A N/A N/A
    897318 8zmv:B (1.45) BS02 peptide N/A N/A N/A N/A
    897319 8zmy:A (2.9) BS01 1KI N/A N/A P37840 39172784
    897320 8zmy:A (2.9) BS02 1KI N/A N/A P37840 39172784
    897321 8zmy:B (2.9) BS01 1KI N/A N/A P37840 39172784
    897322 8zmy:B (2.9) BS02 1KI N/A N/A P37840 39172784
    897323 8zmy:B (2.9) BS03 1KI N/A N/A P37840 39172784
    897324 8zmy:B (2.9) BS04 1KI N/A N/A P37840 39172784
    897325 8zmy:C (2.9) BS01 1KI N/A N/A P37840 39172784
    897326 8zmy:C (2.9) BS02 1KI N/A N/A P37840 39172784
    897327 8zmy:C (2.9) BS03 1KI N/A N/A P37840 39172784
    897328 8zmy:C (2.9) BS04 1KI N/A N/A P37840 39172784
    897329 8zmy:D (2.9) BS01 1KI N/A N/A P37840 39172784
    897330 8zmy:E (2.9) BS01 1KI N/A N/A P37840 39172784
    897331 8zmy:E (2.9) BS02 1KI N/A N/A P37840 39172784
    897332 8zmy:E (2.9) BS03 1KI N/A N/A P37840 39172784
    897333 8zmy:F (2.9) BS01 1KI N/A N/A P37840 39172784
    897334 8zmy:F (2.9) BS02 1KI N/A N/A P37840 39172784
    897335 8zmy:F (2.9) BS03 1KI N/A N/A P37840 39172784
    897336 8zmy:F (2.9) BS04 1KI N/A N/A P37840 39172784
    897337 8zmy:G (2.9) BS01 1KI N/A N/A P37840 39172784
    897338 8zmy:G (2.9) BS02 1KI N/A N/A P37840 39172784
    897339 8zmy:G (2.9) BS03 1KI N/A N/A P37840 39172784
    897340 8zmy:H (2.9) BS01 1KI N/A N/A P37840 39172784
    897341 8zmy:H (2.9) BS02 1KI N/A N/A P37840 39172784
    897342 8zmy:H (2.9) BS03 1KI N/A N/A P37840 39172784
    897343 8zmy:H (2.9) BS04 1KI N/A N/A P37840 39172784
    897344 8zmy:H (2.9) BS05 1KI N/A N/A P37840 39172784
    897345 8zmy:I (2.9) BS01 1KI N/A N/A P37840 39172784
    897346 8zmy:J (2.9) BS01 1KI N/A N/A P37840 39172784
    897347 8zmy:J (2.9) BS02 1KI N/A N/A P37840 39172784
    897348 8zmy:J (2.9) BS03 1KI N/A N/A P37840 39172784
    897349 8zmy:K (2.9) BS01 1KI N/A N/A P37840 39172784
    897350 8zmy:K (2.9) BS02 1KI N/A N/A P37840 39172784
    897351 8zmy:K (2.9) BS03 1KI N/A N/A P37840 39172784
    897352 8zmy:K (2.9) BS04 1KI N/A N/A P37840 39172784
    897353 8zmy:L (2.9) BS01 1KI N/A N/A P37840 39172784
    897354 8zmy:L (2.9) BS02 1KI N/A N/A P37840 39172784
    897355 8zn1:A (3.0) BS01 NAD 1.2.1.- GO:0000166 ... A0A059ZTK9 N/A
    897356 8zn1:B (3.0) BS01 NAD 1.2.1.- GO:0000166 ... A0A059ZTK9 N/A
    897357 8zn1:C (3.0) BS01 NAD 1.2.1.- GO:0000166 ... A0A059ZTK9 N/A
    897358 8zn1:D (3.0) BS01 NAD 1.2.1.- GO:0000166 ... A0A059ZTK9 N/A
    897359 8zn2:A (2.651) BS01 PAE 2.7.7.3 GO:0004595 ... A4W515 N/A
    897360 8zn2:B (2.651) BS01 PAE 2.7.7.3 GO:0004595 ... A4W515 N/A
    897361 8zn2:C (2.651) BS01 PAE 2.7.7.3 GO:0004595 ... A4W515 N/A
    897362 8zn2:D (2.651) BS01 PAE 2.7.7.3 GO:0004595 ... A4W515 N/A
    897363 8zn2:E (2.651) BS01 PAE 2.7.7.3 GO:0004595 ... A4W515 N/A
    897364 8zn2:F (2.651) BS01 PAE 2.7.7.3 GO:0004595 ... A4W515 N/A
    897365 8zn3:A (2.41) BS01 PAE 2.7.7.3 GO:0004595 ... A4W515 N/A
    897366 8zn3:B (2.41) BS01 PAE 2.7.7.3 GO:0004595 ... A4W515 N/A
    897367 8zn3:C (2.41) BS01 PAE 2.7.7.3 GO:0004595 ... A4W515 N/A
    897368 8zn3:D (2.41) BS01 PAE 2.7.7.3 GO:0004595 ... A4W515 N/A
    897369 8zn3:E (2.41) BS01 PAE 2.7.7.3 GO:0004595 ... A4W515 N/A
    897370 8zn3:F (2.41) BS01 PAE 2.7.7.3 GO:0004595 ... A4W515 N/A
    897371 8zn4:A (2.3) BS01 NAD 1.2.1.- GO:0000166 ... A0A059ZTK9 N/A
    897372 8zn4:B (2.3) BS01 NAD 1.2.1.- GO:0000166 ... A0A059ZTK9 N/A
    897373 8zn4:C (2.3) BS01 NAD 1.2.1.- GO:0000166 ... A0A059ZTK9 N/A
    897374 8zn4:D (2.3) BS01 NAD 1.2.1.- GO:0000166 ... A0A059ZTK9 N/A
    897375 8znb:A (2.53) BS01 NDP 1.4.1.3 GO:0004352 ... O74024 N/A
    897376 8znc:A (2.41) BS01 NDP 1.4.1.3 GO:0004352 ... O74024 N/A
    897377 8znc:A (2.41) BS02 AKG 1.4.1.3 GO:0004352 ... O74024 N/A
    897378 8znd:A (2.53) BS01 NDP 1.4.1.3 GO:0004352 ... O74024 N/A
    897379 8zne:A (2.64) BS01 NAP N/A GO:0004352 ... O74024 N/A
    897380 8zne:A (2.64) BS02 GLU N/A GO:0004352 ... O74024 N/A
    897381 8zng:A (2.5) BS01 NDP 1.4.1.3 GO:0004352 ... O74024 N/A
    897382 8zng:A (2.5) BS02 AKG 1.4.1.3 GO:0004352 ... O74024 N/A
    897383 8zoy:A (2.5) BS01 LNR N/A N/A P23975 39223283
    897384 8zoz:A (3.2) BS01 AMP 1.2.1.- GO:0000166 ... A0A059ZTK9 N/A
    897385 8zoz:B (3.2) BS01 AMP 1.2.1.- GO:0000166 ... A0A059ZTK9 N/A
    897386 8zoz:C (3.2) BS01 AMP 1.2.1.- GO:0000166 ... A0A059ZTK9 N/A
    897387 8zoz:D (3.2) BS01 AMP 1.2.1.- GO:0000166 ... A0A059ZTK9 N/A
    897388 8zp1:A (2.5) BS01 A1D9Y N/A N/A P23975 39223283
    897389 8zp2:A (2.4) BS01 A1LX4 N/A N/A P23975 39223283
    897390 8zpb:A (2.6) BS01 LNR N/A N/A P23975 39223283
    897391 8zps:R (2.97) BS01 peptide N/A N/A P49683 39223120
    897392 8zpt:R (2.96) BS01 peptide N/A N/A P49683 39223120
    897393 8zq3:A (2.43) BS01 GDP N/A GO:0000045 ... P51149 38897042
    897394 8zqe:R (2.9) BS01 peptide N/A N/A P0ABE7
    P0AEX9
    P49685    		 38918398
    897395 8zr5:C (3.31) BS01 A1D8M N/A GO:0004930 ... Q8TDV5 N/A
    897396 8zrk:R (2.82) BS01 A1D8Y N/A GO:0004930 ... Q8TDV5 N/A
    897397 8zrz:A (1.26) BS01 GLC N/A N/A P36924 N/A
    897398 8zrz:A (1.26) BS02 GLC N/A N/A P36924 N/A
    897399 8zrz:A (1.26) BS03 GLC N/A N/A P36924 N/A
    897400 8zrz:A (1.26) BS04 GLC N/A N/A P36924 N/A
    Reference:
    • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023)(download the PDF file).
    • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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