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BioLiP Library
Download all results in tab-seperated text for 903398 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    896601 8ytr:B (1.8) BS01 CU ? GO:0005507 ... W0DSL1 N/A
    896602 8yts:A (1.15) BS01 HEC ? GO:0009055 ... W0DLP1 N/A
    896603 8yts:B (1.15) BS01 HEC ? GO:0009055 ... W0DLP1 N/A
    896604 8ytx:A (2.53) BS01 GTP 3.6.5.- GO:0000226 ... Q2XVP4 N/A
    896605 8ytx:A (2.53) BS02 CA 3.6.5.- GO:0000226 ... Q2XVP4 N/A
    896606 8ytx:A (2.53) BS03 A1D68 3.6.5.- GO:0000226 ... Q2XVP4 N/A
    896607 8ytx:B (2.53) BS01 GDP 6.3.2.25 GO:0005525 ... A0A8D0VN39 N/A
    896608 8ytx:B (2.53) BS02 A1D68 6.3.2.25 GO:0005525 ... A0A8D0VN39 N/A
    896609 8ytx:C (2.53) BS01 GTP 3.6.5.- GO:0000226 ... Q2XVP4 N/A
    896610 8ytx:C (2.53) BS02 CA 3.6.5.- GO:0000226 ... Q2XVP4 N/A
    896611 8ytx:D (2.53) BS01 GDP 6.3.2.25 GO:0005525 ... A0A8D0VN39 N/A
    896612 8ytx:D (2.53) BS02 A1D68 6.3.2.25 GO:0005525 ... A0A8D0VN39 N/A
    896613 8ytx:F (2.53) BS01 ACP 6.3.2.25 GO:0046872 ... A0A8V0Z8P0 N/A
    896614 8yu5:A (1.45) BS01 CU ? GO:0046872 ... A0A5C7ETD9 N/A
    896615 8yu5:A (1.45) BS02 CU ? GO:0046872 ... A0A5C7ETD9 N/A
    896616 8yu5:A (1.45) BS03 CU ? GO:0046872 ... A0A5C7ETD9 N/A
    896617 8yu5:B (1.45) BS01 CU ? GO:0046872 ... A0A5C7ETD9 N/A
    896618 8yu5:B (1.45) BS02 CU ? GO:0046872 ... A0A5C7ETD9 N/A
    896619 8yu6:A (1.55) BS01 CU ? GO:0046872 ... A0A5C7ETD9 N/A
    896620 8yu6:A (1.55) BS02 CU ? GO:0046872 ... A0A5C7ETD9 N/A
    896621 8yu6:A (1.55) BS03 CU ? GO:0046872 ... A0A5C7ETD9 N/A
    896622 8yu6:A (1.55) BS04 CU ? GO:0046872 ... A0A5C7ETD9 N/A
    896623 8yu6:B (1.55) BS01 CU ? GO:0046872 ... A0A5C7ETD9 N/A
    896624 8yu6:B (1.55) BS02 CU ? GO:0046872 ... A0A5C7ETD9 N/A
    896625 8yu6:B (1.55) BS03 CU ? GO:0046872 ... A0A5C7ETD9 N/A
    896626 8yu9:A (3.25) BS01 GTP 3.6.5.- GO:0000226 ... Q2XVP4 N/A
    896627 8yu9:A (3.25) BS02 CA 3.6.5.- GO:0000226 ... Q2XVP4 N/A
    896628 8yu9:B (3.25) BS01 A1D7A ? GO:0005525 ... A0A8D0VN39 N/A
    896629 8yu9:B (3.25) BS02 GDP ? GO:0005525 ... A0A8D0VN39 N/A
    896630 8yu9:B (3.25) BS03 MG ? GO:0005525 ... A0A8D0VN39 N/A
    896631 8yu9:C (3.25) BS01 GTP 3.6.5.- GO:0000226 ... Q2XVP4 N/A
    896632 8yu9:C (3.25) BS02 CA 3.6.5.- GO:0000226 ... Q2XVP4 N/A
    896633 8yu9:C (3.25) BS03 A1D7A 3.6.5.- GO:0000226 ... Q2XVP4 N/A
    896634 8yu9:D (3.25) BS01 A1D7A ? GO:0005525 ... A0A8D0VN39 N/A
    896635 8yu9:D (3.25) BS02 GDP ? GO:0005525 ... A0A8D0VN39 N/A
    896636 8yu9:F (3.25) BS01 ACP 6.3.2.25 GO:0046872 ... A0A8V0Z8P0 N/A
    896637 8yua:A (2.37) BS01 GTP 3.6.5.- GO:0000226 ... Q2XVP4 N/A
    896638 8yua:A (2.37) BS02 CA 3.6.5.- GO:0000226 ... Q2XVP4 N/A
    896639 8yua:A (2.37) BS03 MG 3.6.5.- GO:0000226 ... Q2XVP4 N/A
    896640 8yua:B (2.37) BS01 GDP ? GO:0005525 ... A0A8D0VN39 N/A
    896641 8yua:B (2.37) BS02 A1D69 ? GO:0005525 ... A0A8D0VN39 N/A
    896642 8yua:C (2.37) BS01 GTP 3.6.5.- GO:0000226 ... Q2XVP4 N/A
    896643 8yua:C (2.37) BS02 CA 3.6.5.- GO:0000226 ... Q2XVP4 N/A
    896644 8yua:D (2.37) BS01 GDP ? GO:0005525 ... A0A8D0VN39 N/A
    896645 8yua:D (2.37) BS02 A1D69 ? GO:0005525 ... A0A8D0VN39 N/A
    896646 8yua:F (2.37) BS01 ACP 6.3.2.25 GO:0046872 ... A0A8V0Z8P0 N/A
    896647 8yud:A (2.81) BS01 MG 5.3.1.5 GO:0000287 ... Q93HF3 N/A
    896648 8yud:A (2.81) BS02 MG 5.3.1.5 GO:0000287 ... Q93HF3 N/A
    896649 8yud:B (2.81) BS01 MG 5.3.1.5 GO:0000287 ... Q93HF3 N/A
    896650 8yud:B (2.81) BS02 MG 5.3.1.5 GO:0000287 ... Q93HF3 N/A
    896651 8yud:C (2.81) BS01 MG 5.3.1.5 GO:0000287 ... Q93HF3 N/A
    896652 8yud:C (2.81) BS02 MG 5.3.1.5 GO:0000287 ... Q93HF3 N/A
    896653 8yud:D (2.81) BS01 MG 5.3.1.5 GO:0000287 ... Q93HF3 N/A
    896654 8yud:D (2.81) BS02 MG 5.3.1.5 GO:0000287 ... Q93HF3 N/A
    896655 8yud:E (2.81) BS01 MG 5.3.1.5 GO:0000287 ... Q93HF3 N/A
    896656 8yud:E (2.81) BS02 MG 5.3.1.5 GO:0000287 ... Q93HF3 N/A
    896657 8yud:F (2.81) BS01 MG 5.3.1.5 GO:0000287 ... Q93HF3 N/A
    896658 8yud:F (2.81) BS02 MG 5.3.1.5 GO:0000287 ... Q93HF3 N/A
    896659 8yut:R (2.7) BS01 A1D67 ? GO:0004930 ... P25021 38647423
    896660 8yut:R (2.7) BS02 CLR ? GO:0004930 ... P25021 38647423
    896661 8yuu:R (2.7) BS01 HSM ? GO:0004930 ... Q9Y5N1 38647423
    896662 8yuu:R (2.7) BS02 CLR ? GO:0004930 ... Q9Y5N1 38647423
    896663 8yuv:R (3.0) BS01 A1LY4 ? GO:0004930 ... Q9Y5N1 38647423
    896664 8yuv:R (3.0) BS02 CLR ? GO:0004930 ... Q9Y5N1 38647423
    896665 8yv8:A (3.0) BS01 dna N/A GO:0000786 ... P68431 N/A
    896666 8yv8:A (3.0) BS02 dna N/A GO:0000786 ... P68431 N/A
    896667 8yv8:B (3.0) BS01 dna N/A GO:0000781 ... P62805 N/A
    896668 8yv8:B (3.0) BS02 dna N/A GO:0000781 ... P62805 N/A
    896669 8yv8:C (3.0) BS01 dna N/A GO:0000786 ... P04908 N/A
    896670 8yv8:C (3.0) BS02 dna N/A GO:0000786 ... P04908 N/A
    896671 8yv8:D (3.0) BS01 dna N/A GO:0000786 ... O60814 N/A
    896672 8yv8:D (3.0) BS02 dna N/A GO:0000786 ... O60814 N/A
    896673 8yv8:E (3.0) BS01 dna N/A GO:0000786 ... P68431 N/A
    896674 8yv8:E (3.0) BS02 dna N/A GO:0000786 ... P68431 N/A
    896675 8yv8:F (3.0) BS01 dna N/A GO:0000781 ... P62805 N/A
    896676 8yv8:F (3.0) BS02 dna N/A GO:0000781 ... P62805 N/A
    896677 8yv8:G (3.0) BS01 dna N/A GO:0000786 ... P04908 N/A
    896678 8yv8:G (3.0) BS02 dna N/A GO:0000786 ... P04908 N/A
    896679 8yv8:H (3.0) BS01 dna N/A GO:0000786 ... O60814 N/A
    896680 8yv8:H (3.0) BS02 dna N/A GO:0000786 ... O60814 N/A
    896681 8yv8:K (3.0) BS01 dna N/A N/A Q9BWT1 N/A
    896682 8yv8:K (3.0) BS02 dna N/A N/A Q9BWT1 N/A
    896683 8yv8:K (3.0) BS03 ZN N/A N/A Q9BWT1 N/A
    896684 8yv8:K (3.0) BS04 ZN N/A N/A Q9BWT1 N/A
    896685 8yv8:K (3.0) BS05 ZN N/A N/A Q9BWT1 N/A
    896686 8yvg:A (2.0) BS01 A1L0C N/A GO:0000502 ... A0A8C0T7K4 38906067
    896687 8yvg:C (2.0) BS01 A1L0C N/A N/A Q5W416 38906067
    896688 8yvg:D (2.0) BS01 A1L0C N/A N/A Q5W416 38906067
    896689 8yvg:F (2.0) BS01 A1L0C N/A GO:0000502 ... A0A8C0T7K4 38906067
    896690 8yvp:A (2.5) BS01 A1L0D N/A N/A Q60692 38906067
    896691 8yvp:C (2.5) BS01 A1L0D N/A N/A O55234 38906067
    896692 8yvp:C (2.5) BS02 A1L0D N/A N/A O55234 38906067
    896693 8yvp:D (2.5) BS01 A1L0D N/A N/A O55234 38906067
    896694 8yvp:D (2.5) BS02 A1L0D N/A N/A O55234 38906067
    896695 8yvp:F (2.5) BS01 A1L0D N/A N/A Q60692 38906067
    896696 8yvp:M (2.5) BS01 A1L0D N/A GO:0000502 ... Q9Z2U1 38906067
    896697 8yvp:S (2.5) BS01 A1L0D N/A GO:0000502 ... O09061 38906067
    896698 8yvp:X (2.5) BS01 A1L0D N/A GO:0000502 ... O09061 38906067
    896699 8yw4:R (3.26) BS01 peptide N/A N/A P48546 39019866
    896700 8ywo:A (1.58) BS01 02A 3.8.1.2 GO:0009636 ... B2Z3V8 N/A
    896701 8yxa:A (2.5) BS01 X56 N/A N/A P02768 39083648
    896702 8yxa:B (2.5) BS01 X56 N/A N/A P02768 39083648
    896703 8yxb:A (2.2) BS01 9F2 N/A N/A P02768 39083648
    896704 8yxb:B (2.2) BS01 9F2 N/A N/A P02768 39083648
    896705 8yxm:A (2.93) BS01 ZN 2.1.1.-
    2.1.1.375
    2.7.7.48
    2.7.7.88
    3.6.1.-    		 GO:0001172 ... C0JJA4 38760379
    896706 8yxm:A (2.93) BS02 ZN 2.1.1.-
    2.1.1.375
    2.7.7.48
    2.7.7.88
    3.6.1.-    		 GO:0001172 ... C0JJA4 38760379
    896707 8yxp:A (3.01) BS01 ZN 2.1.1.-
    2.1.1.375
    2.7.7.48
    2.7.7.88
    3.6.1.-    		 GO:0001172 ... C0JJA4 38760379
    896708 8yxp:A (3.01) BS02 ZN 2.1.1.-
    2.1.1.375
    2.7.7.48
    2.7.7.88
    3.6.1.-    		 GO:0001172 ... C0JJA4 38760379
    896709 8yxw:A (2.1) BS01 dna N/A N/A Q15650 38870938
    896710 8yxw:C (2.1) BS01 dna N/A N/A Q15650 38870938
    896711 8yxx:A (2.65) BS01 dna N/A N/A Q15650 38870938
    896712 8yxx:C (2.65) BS01 dna N/A N/A Q15650 38870938
    896713 8yyn:A (1.9) BS01 XYP 3.2.1.8 GO:0004553 ... I3VTR8 N/A
    896714 8yyn:B (1.9) BS01 XYP 3.2.1.8 GO:0004553 ... I3VTR8 N/A
    896715 8yyo:A (1.7) BS01 XYP 3.2.1.8 GO:0004553 ... I3VTR8 N/A
    896716 8yyo:B (1.7) BS01 XYP 3.2.1.8 GO:0004553 ... I3VTR8 N/A
    896717 8yyq:A (1.95) BS01 A1L0G ? GO:0000166 ... A0A0F7R6G7 38805007
    896718 8yyr:A (1.8) BS01 A1L0H ? GO:0000166 ... A0A0F7R6G7 38805007
    896719 8yzs:A (2.31) BS01 dna N/A N/A Q96RE7 39225042
    896720 8yzs:A (2.31) BS02 dna N/A N/A Q96RE7 39225042
    896721 8yzs:B (2.31) BS01 dna N/A N/A Q96RE7 39225042
    896722 8yzs:B (2.31) BS02 dna N/A N/A Q96RE7 39225042
    896723 8yzt:A (2.58) BS01 dna N/A N/A Q8N9N5 39225042
    896724 8yzt:C (2.58) BS01 dna N/A N/A Q8N9N5 39225042
    896725 8yzt:C (2.58) BS02 dna N/A N/A Q8N9N5 39225042
    896726 8yzt:D (2.58) BS01 dna N/A N/A Q8N9N5 39225042
    896727 8yzt:D (2.58) BS02 dna N/A N/A Q8N9N5 39225042
    896728 8z0f:A (3.27) BS01 ATP N/A N/A P28288 N/A
    896729 8z0f:A (3.27) BS02 ATP N/A N/A P28288 N/A
    896730 8z0f:B (3.27) BS01 ATP N/A N/A P28288 N/A
    896731 8z0f:B (3.27) BS02 ATP N/A N/A P28288 N/A
    896732 8z10:A (2.35) BS01 PRO ? N/A P35222 N/A
    896733 8z1l:A (3.4) BS01 A1LX4 N/A GO:0003779 ... P23975 39048818
    896734 8z1r:A (1.82) BS01 MG N/A N/A G5EH03 N/A
    896735 8z1r:B (1.82) BS01 MG N/A N/A G5EH03 N/A
    896736 8z38:A (2.17) BS01 CPI N/A GO:0000413 ... A0A4P7N8E2 N/A
    896737 8z38:B (2.17) BS01 CPI N/A GO:0000413 ... A0A4P7N8E2 N/A
    896738 8z3s:A (3.9) BS01 A1L04 N/A GO:0001666 ... Q12791 39089879
    896739 8z3s:A (3.9) BS02 Y01 N/A GO:0001666 ... Q12791 39089879
    896740 8z3s:A (3.9) BS03 CA N/A GO:0001666 ... Q12791 39089879
    896741 8z3s:A (3.9) BS04 CA N/A GO:0001666 ... Q12791 39089879
    896742 8z3s:B (3.9) BS01 A1L04 N/A GO:0001666 ... Q12791 39089879
    896743 8z3s:B (3.9) BS02 CA N/A GO:0001666 ... Q12791 39089879
    896744 8z3s:B (3.9) BS03 CA N/A GO:0001666 ... Q12791 39089879
    896745 8z3s:C (3.9) BS01 A1L04 N/A GO:0001666 ... Q12791 39089879
    896746 8z3s:C (3.9) BS02 CA N/A GO:0001666 ... Q12791 39089879
    896747 8z3s:C (3.9) BS03 CA N/A GO:0001666 ... Q12791 39089879
    896748 8z3s:D (3.9) BS01 A1L04 N/A GO:0001666 ... Q12791 39089879
    896749 8z3s:D (3.9) BS02 Y01 N/A GO:0001666 ... Q12791 39089879
    896750 8z3s:D (3.9) BS03 CA N/A GO:0001666 ... Q12791 39089879
    896751 8z3s:D (3.9) BS04 CA N/A GO:0001666 ... Q12791 39089879
    896752 8z4b:B (2.5) BS01 peptide ? N/A P01308 N/A
    896753 8z4b:D (2.5) BS01 peptide ? N/A P01308 N/A
    896754 8z4j:B (2.97) BS01 rna N/A N/A N/A 39143216
    896755 8z4j:B (2.97) BS02 ZN N/A N/A N/A 39143216
    896756 8z4j:C (2.97) BS01 rna N/A N/A N/A 39143216
    896757 8z4j:C (2.97) BS02 rna N/A N/A N/A 39143216
    896758 8z4j:C (2.97) BS03 ZN N/A N/A N/A 39143216
    896759 8z4j:D (2.97) BS01 rna N/A N/A N/A 39143216
    896760 8z4j:D (2.97) BS02 rna N/A N/A N/A 39143216
    896761 8z4j:D (2.97) BS03 ZN N/A N/A N/A 39143216
    896762 8z4j:E (2.97) BS01 rna N/A N/A N/A 39143216
    896763 8z4j:E (2.97) BS02 rna N/A N/A N/A 39143216
    896764 8z4j:E (2.97) BS03 ZN N/A N/A N/A 39143216
    896765 8z4j:F (2.97) BS01 rna N/A N/A N/A 39143216
    896766 8z4j:F (2.97) BS02 rna N/A N/A N/A 39143216
    896767 8z4j:G (2.97) BS01 rna N/A N/A N/A 39143216
    896768 8z4j:H (2.97) BS01 rna N/A N/A N/A 39143216
    896769 8z4j:H (2.97) BS02 ZN N/A N/A N/A 39143216
    896770 8z4j:I (2.97) BS01 rna N/A N/A N/A 39143216
    896771 8z4j:J (2.97) BS01 rna N/A N/A N/A 39143216
    896772 8z4j:J (2.97) BS02 rna N/A N/A N/A 39143216
    896773 8z4j:K (2.97) BS01 rna N/A N/A N/A 39143216
    896774 8z4j:L (2.97) BS01 rna N/A N/A N/A 39143216
    896775 8z4l:A (2.85) BS01 rna N/A N/A N/A 39143216
    896776 8z4l:A (2.85) BS02 rna N/A N/A N/A 39143216
    896777 8z4l:A (2.85) BS03 ZN N/A N/A N/A 39143216
    896778 8z4l:B (2.85) BS01 rna N/A N/A N/A 39143216
    896779 8z4l:B (2.85) BS02 rna N/A N/A N/A 39143216
    896780 8z4l:B (2.85) BS03 ZN N/A N/A N/A 39143216
    896781 8z4l:C (2.85) BS01 rna N/A N/A N/A 39143216
    896782 8z4l:C (2.85) BS02 rna N/A N/A N/A 39143216
    896783 8z4l:C (2.85) BS03 ZN N/A N/A N/A 39143216
    896784 8z4l:D (2.85) BS01 rna N/A N/A N/A 39143216
    896785 8z4l:D (2.85) BS02 rna N/A N/A N/A 39143216
    896786 8z4l:E (2.85) BS01 rna N/A N/A N/A 39143216
    896787 8z4l:E (2.85) BS02 rna N/A N/A N/A 39143216
    896788 8z4l:E (2.85) BS03 ZN N/A N/A N/A 39143216
    896789 8z4l:F (2.85) BS01 rna N/A N/A N/A 39143216
    896790 8z4l:F (2.85) BS02 rna N/A N/A N/A 39143216
    896791 8z4l:F (2.85) BS03 ZN N/A N/A N/A 39143216
    896792 8z4l:G (2.85) BS01 rna N/A N/A N/A 39143216
    896793 8z4l:G (2.85) BS02 ZN N/A N/A N/A 39143216
    896794 8z4l:H (2.85) BS01 rna N/A N/A N/A 39143216
    896795 8z4l:H (2.85) BS02 ZN N/A N/A N/A 39143216
    896796 8z4l:I (2.85) BS01 rna N/A N/A N/A 39143216
    896797 8z4l:J (2.85) BS01 rna N/A N/A N/A 39143216
    896798 8z4l:J (2.85) BS02 rna N/A N/A N/A 39143216
    896799 8z4l:J (2.85) BS03 ZN N/A N/A N/A 39143216
    896800 8z4l:K (2.85) BS01 rna N/A N/A N/A 39143216
    Reference:
    • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023)(download the PDF file).
    • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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