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BioLiP Library
Download all results in tab-seperated text for 903398 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    896401 8yop:Lj (2.2) BS01 rna N/A GO:0002181 ... P61927 38942792
    896402 8yop:Lj (2.2) BS02 rna N/A GO:0002181 ... P61927 38942792
    896403 8yop:Lj (2.2) BS03 ZN N/A GO:0002181 ... P61927 38942792
    896404 8yop:Lk (2.2) BS01 rna N/A GO:0001501 ... P63173 38942792
    896405 8yop:Ll (2.2) BS01 rna N/A GO:0002181 ... P62891 38942792
    896406 8yop:Ll (2.2) BS02 rna N/A GO:0002181 ... P62891 38942792
    896407 8yop:Lm (2.2) BS01 rna N/A GO:0002181 ... P62987 38942792
    896408 8yop:Lm (2.2) BS02 ZN N/A GO:0002181 ... P62987 38942792
    896409 8yop:Lo (2.2) BS01 rna N/A GO:0002181 ... P83881 38942792
    896410 8yop:Lo (2.2) BS02 ZN N/A GO:0002181 ... P83881 38942792
    896411 8yop:Lp (2.2) BS01 rna N/A GO:0002181 ... P61513 38942792
    896412 8yop:Lp (2.2) BS02 ZN N/A GO:0002181 ... P61513 38942792
    896413 8yop:Lr (2.2) BS01 rna N/A GO:0002181 ... P46779 38942792
    896414 8yop:Ls (2.2) BS01 rna N/A GO:0000027 ... P05388 38942792
    896415 8yop:Lt (2.2) BS01 rna N/A GO:0002181 ... P30050 38942792
    896416 8yop:SA (2.2) BS01 rna N/A GO:0000028 ... P08865 38942792
    896417 8yop:SB (2.2) BS01 rna N/A GO:0002181 ... P61247 38942792
    896418 8yop:SC (2.2) BS01 rna N/A GO:0002181 ... P15880 38942792
    896419 8yop:SD (2.2) BS01 rna N/A GO:0000977 ... P23396 38942792
    896420 8yop:SE (2.2) BS01 rna N/A GO:0002181 ... P62701 38942792
    896421 8yop:SF (2.2) BS01 rna N/A GO:0000028 ... P46782 38942792
    896422 8yop:SG (2.2) BS01 rna N/A GO:0000082 ... P62753 38942792
    896423 8yop:SH (2.2) BS01 rna N/A GO:0001843 ... P62081 38942792
    896424 8yop:SI (2.2) BS01 rna N/A GO:0000462 ... P62241 38942792
    896425 8yop:SI (2.2) BS02 rna N/A GO:0000462 ... P62241 38942792
    896426 8yop:SJ (2.2) BS01 rna N/A GO:0002181 ... P46781 38942792
    896427 8yop:SK (2.2) BS01 rna N/A GO:0002181 ... P46783 38942792
    896428 8yop:SL (2.2) BS01 rna N/A GO:0002181 ... P62280 38942792
    896429 8yop:SL (2.2) BS02 rna N/A GO:0002181 ... P62280 38942792
    896430 8yop:SM (2.2) BS01 rna N/A GO:0002181 ... P25398 38942792
    896431 8yop:SN (2.2) BS01 rna N/A GO:0002181 ... P62277 38942792
    896432 8yop:SN (2.2) BS02 rna N/A GO:0002181 ... P62277 38942792
    896433 8yop:SO (2.2) BS01 rna N/A GO:0000028 ... P62263 38942792
    896434 8yop:SP (2.2) BS01 rna N/A GO:0000028 ... P62841 38942792
    896435 8yop:SQ (2.2) BS01 rna N/A GO:0000462 ... P62249 38942792
    896436 8yop:SR (2.2) BS01 rna N/A GO:0002181 ... P08708 38942792
    896437 8yop:SS (2.2) BS01 rna N/A GO:0002181 ... P62269 38942792
    896438 8yop:ST (2.2) BS01 rna N/A GO:0000028 ... P39019 38942792
    896439 8yop:SU (2.2) BS01 rna N/A GO:0002181 ... P60866 38942792
    896440 8yop:SW (2.2) BS01 rna N/A GO:0002181 ... P62244 38942792
    896441 8yop:SX (2.2) BS01 rna N/A GO:0002181 ... P62266 38942792
    896442 8yop:SY (2.2) BS01 rna N/A GO:0002181 ... P62847 38942792
    896443 8yop:SZ (2.2) BS01 rna N/A GO:0002181 ... P62851 38942792
    896444 8yop:Sa (2.2) BS01 rna N/A GO:0002181 ... P62854 38942792
    896445 8yop:Sa (2.2) BS02 ZN N/A GO:0002181 ... P62854 38942792
    896446 8yop:Sb (2.2) BS01 rna N/A GO:0000028 ... P42677 38942792
    896447 8yop:Sc (2.2) BS01 rna N/A GO:0000028 ... P62857 38942792
    896448 8yop:Sd (2.2) BS01 rna N/A GO:0002181 ... P62273 38942792
    896449 8yop:Sd (2.2) BS02 ZN N/A GO:0002181 ... P62273 38942792
    896450 8yop:Se (2.2) BS01 rna N/A N/A P62861 38942792
    896451 8yop:Sf (2.2) BS01 rna N/A GO:0002181 ... P62979 38942792
    896452 8yop:Sg (2.2) BS01 rna N/A GO:0001891 ... P63244 38942792
    896453 8you:A (1.8) BS01 SEK ? GO:0046872 ... A0A5C7ETD9 N/A
    896454 8you:A (1.8) BS02 CU ? GO:0046872 ... A0A5C7ETD9 N/A
    896455 8you:A (1.8) BS03 CU ? GO:0046872 ... A0A5C7ETD9 N/A
    896456 8you:A (1.8) BS04 CU ? GO:0046872 ... A0A5C7ETD9 N/A
    896457 8you:A (1.8) BS05 CU ? GO:0046872 ... A0A5C7ETD9 N/A
    896458 8you:B (1.8) BS01 CU ? GO:0046872 ... A0A5C7ETD9 N/A
    896459 8you:B (1.8) BS02 CU ? GO:0046872 ... A0A5C7ETD9 N/A
    896460 8you:B (1.8) BS03 CU ? GO:0046872 ... A0A5C7ETD9 N/A
    896461 8you:B (1.8) BS04 SE ? GO:0046872 ... A0A5C7ETD9 N/A
    896462 8yp3:A (2.12) BS01 UD1 N/A N/A A0A2H1VI03 39039661
    896463 8yp3:A (2.12) BS02 MG N/A N/A A0A2H1VI03 39039661
    896464 8yp3:B (2.12) BS01 UD1 N/A N/A A0A2H1VI03 39039661
    896465 8yp3:B (2.12) BS02 MG N/A N/A A0A2H1VI03 39039661
    896466 8yp3:C (2.12) BS01 UD1 N/A N/A A0A2H1VI03 39039661
    896467 8yp3:C (2.12) BS02 MG N/A N/A A0A2H1VI03 39039661
    896468 8yp3:D (2.12) BS01 UD1 N/A N/A A0A2H1VI03 39039661
    896469 8yp3:D (2.12) BS02 MG N/A N/A A0A2H1VI03 39039661
    896470 8ypk:A (2.7) BS01 A1L0C N/A N/A Q60692 38906067
    896471 8ypk:C (2.7) BS01 A1L0C N/A N/A O55234 38906067
    896472 8ypk:D (2.7) BS01 A1L0C N/A N/A O55234 38906067
    896473 8ypk:F (2.7) BS01 A1L0C N/A N/A Q60692 38906067
    896474 8yq8:A (2.1) BS01 A1LZS N/A N/A D9N170 39026651
    896475 8yq8:A (2.1) BS02 NDP N/A N/A D9N170 39026651
    896476 8yq8:A (2.1) BS03 UMP N/A N/A D9N170 39026651
    896477 8yq8:A (2.1) BS04 UMP N/A N/A D9N170 39026651
    896478 8yq8:B (2.1) BS01 UMP N/A N/A D9N170 39026651
    896479 8yq8:B (2.1) BS02 A1LZS N/A N/A D9N170 39026651
    896480 8yq8:B (2.1) BS03 NDP N/A N/A D9N170 39026651
    896481 8yq8:B (2.1) BS04 UMP N/A N/A D9N170 39026651
    896482 8yq9:A (2.4) BS01 NDP N/A N/A D9N170 39026651
    896483 8yq9:A (2.4) BS02 A1LZT N/A N/A D9N170 39026651
    896484 8yq9:A (2.4) BS03 UMP N/A N/A D9N170 39026651
    896485 8yq9:A (2.4) BS04 UMP N/A N/A D9N170 39026651
    896486 8yq9:B (2.4) BS01 UMP N/A N/A D9N170 39026651
    896487 8yq9:B (2.4) BS02 NDP N/A N/A D9N170 39026651
    896488 8yq9:B (2.4) BS03 A1LZT N/A N/A D9N170 39026651
    896489 8yq9:B (2.4) BS04 UMP N/A N/A D9N170 39026651
    896490 8yqp:A (1.76) BS01 A1D6Y N/A N/A N/A 39013318
    896491 8yr2:A (2.89) BS01 41U ? GO:0003779 ... P23975 38750358
    896492 8yr2:A (2.89) BS02 PIO ? GO:0003779 ... P23975 38750358
    896493 8yr2:A (2.89) BS03 CLR ? GO:0003779 ... P23975 38750358
    896494 8yr2:A (2.89) BS04 CLR ? GO:0003779 ... P23975 38750358
    896495 8yr2:A (2.89) BS05 CLR ? GO:0003779 ... P23975 38750358
    896496 8yr2:A (2.89) BS06 CLR ? GO:0003779 ... P23975 38750358
    896497 8yr2:A (2.89) BS07 A1LX7 ? GO:0003779 ... P23975 38750358
    896498 8yr2:A (2.89) BS08 A1LX7 ? GO:0003779 ... P23975 38750358
    896499 8yr2:A (2.89) BS09 CLR ? GO:0003779 ... P23975 38750358
    896500 8yr2:A (2.89) BS10 CLR ? GO:0003779 ... P23975 38750358
    896501 8yr2:A (2.89) BS11 CLR ? GO:0003779 ... P23975 38750358
    896502 8yr2:A (2.89) BS12 CLR ? GO:0003779 ... P23975 38750358
    896503 8yr2:B (2.89) BS01 41U ? GO:0003779 ... P23975 38750358
    896504 8yr2:B (2.89) BS02 PIO ? GO:0003779 ... P23975 38750358
    896505 8yr2:B (2.89) BS03 CLR ? GO:0003779 ... P23975 38750358
    896506 8yr2:B (2.89) BS04 CLR ? GO:0003779 ... P23975 38750358
    896507 8yr2:B (2.89) BS05 CLR ? GO:0003779 ... P23975 38750358
    896508 8yr2:B (2.89) BS06 CLR ? GO:0003779 ... P23975 38750358
    896509 8yr2:B (2.89) BS07 A1LX7 ? GO:0003779 ... P23975 38750358
    896510 8yr2:B (2.89) BS08 A1LX7 ? GO:0003779 ... P23975 38750358
    896511 8yr2:B (2.89) BS09 CLR ? GO:0003779 ... P23975 38750358
    896512 8yr2:B (2.89) BS10 CLR ? GO:0003779 ... P23975 38750358
    896513 8yr2:B (2.89) BS11 CLR ? GO:0003779 ... P23975 38750358
    896514 8yr2:B (2.89) BS12 CLR ? GO:0003779 ... P23975 38750358
    896515 8yr3:A (3.2) BS01 GSH N/A N/A Q9NP58 38822018
    896516 8yr3:B (3.2) BS01 GSH N/A N/A Q9NP58 38822018
    896517 8yr4:A (3.1) BS01 FGA N/A N/A Q9NP58 38822018
    896518 8yr4:B (3.1) BS01 FGA N/A N/A Q9NP58 38822018
    896519 8yrc:A (1.7) BS01 CL ? GO:0005829 ... A0A0H3JTJ5 38581951
    896520 8yrg:R (3.14) BS01 A1LZU ? GO:0004930 ... P0ABE7
    Q96LA9    		 38718132
    896521 8yrh:A (1.841) BS01 ROA N/A N/A P0DTD1 38865813
    896522 8yrs:A (2.43) BS01 dna N/A N/A P46063 N/A
    896523 8yrs:A (2.43) BS02 dna N/A N/A P46063 N/A
    896524 8yrs:A (2.43) BS03 ZN N/A N/A P46063 N/A
    896525 8yrs:B (2.43) BS01 dna N/A N/A P46063 N/A
    896526 8yrs:B (2.43) BS02 dna N/A N/A P46063 N/A
    896527 8yrs:B (2.43) BS03 ZN N/A N/A P46063 N/A
    896528 8yrt:A (2.0) BS01 PLP ? GO:0003824 ... F4KWH0 N/A
    896529 8yru:A (2.0) BS01 ZXN ? GO:0003824 ... F4KWH0 N/A
    896530 8yrv:A (1.7) BS01 OCF ? GO:0003824 ... F4KWH0 N/A
    896531 8ys2:M (5.2) BS01 CA N/A N/A P98155 39127734
    896532 8ys2:M (5.2) BS02 CA N/A N/A P98155 39127734
    896533 8ys2:N (5.2) BS01 CA N/A N/A P98155 39127734
    896534 8ys2:N (5.2) BS02 CA N/A N/A P98155 39127734
    896535 8ys2:O (5.2) BS01 CA N/A N/A P98155 39127734
    896536 8ys2:O (5.2) BS02 CA N/A N/A P98155 39127734
    896537 8ys2:P (5.2) BS01 CA N/A N/A P98155 39127734
    896538 8ys2:P (5.2) BS02 CA N/A N/A P98155 39127734
    896539 8ys4:M (4.8) BS01 CA N/A N/A P98155 39127734
    896540 8ys4:N (4.8) BS01 CA N/A N/A P98155 39127734
    896541 8ys4:O (4.8) BS01 CA N/A N/A P98155 39127734
    896542 8ys4:P (4.8) BS01 CA N/A N/A P98155 39127734
    896543 8ys4:Q (4.8) BS01 CA N/A N/A P98155 39127734
    896544 8ys4:R (4.8) BS01 CA N/A N/A P98155 39127734
    896545 8ys4:S (4.8) BS01 CA N/A N/A P98155 39127734
    896546 8ys4:T (4.8) BS01 CA N/A N/A P98155 39127734
    896547 8ysa:A (1.5) BS01 peptide 2.7.7.50
    3.4.19.12
    3.4.22.-
    3.4.22.69    		 GO:0008233 ... P0DTD1 N/A
    896548 8ysx:A (2.2) BS01 A1L0D N/A GO:0000502 ... A0A8C0T7K4 38906067
    896549 8ysx:C (2.2) BS01 A1L0D N/A N/A Q5W416 38906067
    896550 8ysx:D (2.2) BS01 A1L0D N/A N/A Q5W416 38906067
    896551 8ysx:F (2.2) BS01 A1L0D N/A GO:0000502 ... A0A8C0T7K4 38906067
    896552 8yt5:A (1.6) BS01 ADP 3.6.1.41 GO:0000166 ... A0A0H2URF8 38701795
    896553 8yt5:A (1.6) BS02 FE 3.6.1.41 GO:0000166 ... A0A0H2URF8 38701795
    896554 8yt5:A (1.6) BS03 FE 3.6.1.41 GO:0000166 ... A0A0H2URF8 38701795
    896555 8ytd:A (2.34) BS01 peptide N/A N/A P04629 38950284
    896556 8ytd:A (2.34) BS02 peptide N/A N/A P04629 38950284
    896557 8yte:A (2.26) BS01 peptide N/A N/A P04629 38950284
    896558 8yte:C (2.26) BS01 peptide N/A N/A P04629 38950284
    896559 8yte:C (2.26) BS02 GM1 N/A N/A P04629 38950284
    896560 8yti:A (2.7) BS01 dna ? GO:0000786 ... P68431 N/A
    896561 8yti:A (2.7) BS02 dna ? GO:0000786 ... P68431 N/A
    896562 8yti:B (2.7) BS01 dna ? GO:0000781 ... P62805 N/A
    896563 8yti:B (2.7) BS02 dna ? GO:0000781 ... P62805 N/A
    896564 8yti:C (2.7) BS01 dna ? GO:0000786 ... P04908 N/A
    896565 8yti:C (2.7) BS02 dna ? GO:0000786 ... P04908 N/A
    896566 8yti:D (2.7) BS01 dna ? GO:0000786 ... P06899 N/A
    896567 8yti:D (2.7) BS02 dna ? GO:0000786 ... P06899 N/A
    896568 8yti:E (2.7) BS01 dna ? GO:0000786 ... P68431 N/A
    896569 8yti:E (2.7) BS02 dna ? GO:0000786 ... P68431 N/A
    896570 8yti:F (2.7) BS01 dna ? GO:0000781 ... P62805 N/A
    896571 8yti:F (2.7) BS02 dna ? GO:0000781 ... P62805 N/A
    896572 8yti:G (2.7) BS01 dna ? GO:0000786 ... P04908 N/A
    896573 8yti:G (2.7) BS02 dna ? GO:0000786 ... P04908 N/A
    896574 8yti:G (2.7) BS03 CA ? GO:0000786 ... P04908 N/A
    896575 8yti:H (2.7) BS01 dna ? GO:0000786 ... P06899 N/A
    896576 8yti:H (2.7) BS02 dna ? GO:0000786 ... P06899 N/A
    896577 8yti:K (2.7) BS01 dna ? GO:0000786 ... P68431 N/A
    896578 8yti:K (2.7) BS02 dna ? GO:0000786 ... P68431 N/A
    896579 8yti:L (2.7) BS01 dna ? GO:0000781 ... P62805 N/A
    896580 8yti:L (2.7) BS02 dna ? GO:0000781 ... P62805 N/A
    896581 8yti:M (2.7) BS01 dna ? GO:0000786 ... P04908 N/A
    896582 8yti:M (2.7) BS02 dna ? GO:0000786 ... P04908 N/A
    896583 8yti:N (2.7) BS01 dna ? GO:0000786 ... P06899 N/A
    896584 8yti:N (2.7) BS02 dna ? GO:0000786 ... P06899 N/A
    896585 8yti:O (2.7) BS01 dna ? GO:0000786 ... P68431 N/A
    896586 8yti:O (2.7) BS02 dna ? GO:0000786 ... P68431 N/A
    896587 8yti:P (2.7) BS01 dna ? GO:0000781 ... P62805 N/A
    896588 8yti:P (2.7) BS02 dna ? GO:0000781 ... P62805 N/A
    896589 8yti:Q (2.7) BS01 dna ? GO:0000786 ... P04908 N/A
    896590 8yti:Q (2.7) BS02 dna ? GO:0000786 ... P04908 N/A
    896591 8yti:Q (2.7) BS03 CA ? GO:0000786 ... P04908 N/A
    896592 8yti:R (2.7) BS01 dna ? GO:0000786 ... P06899 N/A
    896593 8yti:R (2.7) BS02 dna ? GO:0000786 ... P06899 N/A
    896594 8yti:U (2.7) BS01 dna ? GO:0000786 ... Q92522 N/A
    896595 8yto:A (1.04) BS01 A1LZO N/A N/A N/A 38909835
    896596 8ytp:A (1.36) BS01 A1LZO N/A N/A N/A 38909835
    896597 8ytq:A (1.7) BS01 CU ? GO:0005507 ... W0DSL1 N/A
    896598 8ytq:C (1.7) BS01 CU ? GO:0005507 ... W0DSL1 N/A
    896599 8ytq:D (1.7) BS01 CU ? GO:0005507 ... W0DSL1 N/A
    896600 8ytr:A (1.8) BS01 CU ? GO:0005507 ... W0DSL1 N/A
    Reference:
    • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023)(download the PDF file).
    • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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