Home Research COVID-19 Services Publications People Teaching Job Opening News Forum Lab Only
Online Services

●I-TASSER ●D-I-TASSER ●I-TASSER-MTD ●C-I-TASSER ●CR-I-TASSER ●QUARK ●C-QUARK ●D-QUARK ●DRfold ●DRfold2 ●LOMETS ●MUSTER ●CEthreader ●SEGMER ●DeepFold ●DeepFoldRNA ●FoldDesign ●COFACTOR ●COACH ●MetaGO ●TripletGO ●IonCom ●FG-MD ●ModRefiner ●REMO ●DEMO ●DEMO-EM ●DMFold ●SPRING ●COTH ●Threpp ●PEPPI ●BSpred ●ANGLOR ●EDock ●BSP-SLIM ●SAXSTER ●FUpred ●ThreaDom ●ThreaDomEx ●EvoDesign ●BindProf ●BindProfX ●SSIPe ●GPCR-I-TASSER ●MAGELLAN ●ResQ ●STRUM ●DAMpred ●TCRfinder

●TM-score ●TM-align ●US-align ●MM-align ●RNA-align ●NW-align ●LS-align ●EDTSurf ●MVP ●MVP-Fit ●SPICKER ●HAAD ●PSSpred ●3DRobot ●MR-REX ●I-TASSER-MR ●SVMSEQ ●NeBcon ●ResPRE ●TripletRes ●DeepPotential ●WDL-RF ●ATPbind ●DockRMSD ●DeepMSA ●DeepMSA2 ●FASPR ●EM-Refiner ●GPU-I-TASSER

●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP Library
Download all results in tab-seperated text for 903398 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

    • Sort results by
    << < 4472 4473 4474 4475 4476 4477 4478 4479 4480 4481 4482 4483 4484 4485 4486 4487 4488 4489 4490 4491 4492 > >>
    Go to page

    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    896201 8ym2:A (2.0) BS01 peptide ? N/A Q8BIZ1 38759928
    896202 8ym7:A (2.83) BS01 FAD 1.14.99.66 N/A O60341 N/A
    896203 8ym7:A (2.83) BS02 A1LZJ 1.14.99.66 N/A O60341 N/A
    896204 8yo1:C (3.55) BS01 ANP N/A N/A A0A346FJ89 N/A
    896205 8yo1:D (3.55) BS01 ANP N/A N/A A0A346FJ89 N/A
    896206 8yo4:A (3.2) BS01 dna N/A N/A P07065 N/A
    896207 8yo4:A (3.2) BS02 dna N/A N/A P07065 N/A
    896208 8yo4:B (3.2) BS01 dna N/A N/A P07065 N/A
    896209 8yo4:B (3.2) BS02 dna N/A N/A P07065 N/A
    896210 8yo4:C (3.2) BS01 dna N/A N/A N/A N/A
    896211 8yo4:C (3.2) BS02 dna N/A N/A N/A N/A
    896212 8yo4:C (3.2) BS03 MG N/A N/A N/A N/A
    896213 8yo4:D (3.2) BS01 dna N/A N/A N/A N/A
    896214 8yo4:D (3.2) BS02 dna N/A N/A N/A N/A
    896215 8yo4:D (3.2) BS03 MG N/A N/A N/A N/A
    896216 8yo7:A (3.16) BS01 dna N/A N/A P07065 N/A
    896217 8yo7:A (3.16) BS02 dna N/A N/A P07065 N/A
    896218 8yo7:B (3.16) BS01 dna N/A N/A P07065 N/A
    896219 8yo7:B (3.16) BS02 dna N/A N/A P07065 N/A
    896220 8yo7:C (3.16) BS01 dna N/A N/A A0A346FJ89 N/A
    896221 8yo7:C (3.16) BS02 dna N/A N/A A0A346FJ89 N/A
    896222 8yo7:C (3.16) BS03 ASW N/A N/A A0A346FJ89 N/A
    896223 8yo7:D (3.16) BS01 dna N/A N/A A0A346FJ89 N/A
    896224 8yo7:D (3.16) BS02 dna N/A N/A A0A346FJ89 N/A
    896225 8yo7:D (3.16) BS03 ASW N/A N/A A0A346FJ89 N/A
    896226 8yod:C (6.8) BS01 ANP N/A N/A A0A346FJ89 N/A
    896227 8yod:D (6.8) BS01 ANP N/A N/A A0A346FJ89 N/A
    896228 8yon:A (6.73) BS01 dna N/A N/A P07065 N/A
    896229 8yon:A (6.73) BS02 dna N/A N/A P07065 N/A
    896230 8yon:B (6.73) BS01 dna N/A N/A P07065 N/A
    896231 8yon:B (6.73) BS02 dna N/A N/A P07065 N/A
    896232 8yon:C (6.73) BS01 dna N/A N/A A0A346FJ89 N/A
    896233 8yon:C (6.73) BS02 dna N/A N/A A0A346FJ89 N/A
    896234 8yon:C (6.73) BS03 ANP N/A N/A A0A346FJ89 N/A
    896235 8yon:D (6.73) BS01 dna N/A N/A A0A346FJ89 N/A
    896236 8yon:D (6.73) BS02 dna N/A N/A A0A346FJ89 N/A
    896237 8yon:D (6.73) BS03 ANP N/A N/A A0A346FJ89 N/A
    896238 8yoo:LA (2.0) BS01 rna N/A GO:0002181 ... P62917 38942792
    896239 8yoo:LA (2.0) BS02 rna N/A GO:0002181 ... P62917 38942792
    896240 8yoo:LA (2.0) BS03 MG N/A GO:0002181 ... P62917 38942792
    896241 8yoo:LB (2.0) BS01 rna N/A GO:0002181 ... P39023 38942792
    896242 8yoo:LC (2.0) BS01 rna N/A GO:0002181 ... P36578 38942792
    896243 8yoo:LC (2.0) BS02 rna N/A GO:0002181 ... P36578 38942792
    896244 8yoo:LD (2.0) BS01 rna N/A GO:0000027 ... P46777 38942792
    896245 8yoo:LD (2.0) BS02 rna N/A GO:0000027 ... P46777 38942792
    896246 8yoo:LE (2.0) BS01 rna N/A GO:0000027 ... Q02878 38942792
    896247 8yoo:LF (2.0) BS01 rna N/A GO:0000463 ... P18124 38942792
    896248 8yoo:LF (2.0) BS02 rna N/A GO:0000463 ... P18124 38942792
    896249 8yoo:LG (2.0) BS01 rna N/A GO:0000470 ... P62424 38942792
    896250 8yoo:LG (2.0) BS02 rna N/A GO:0000470 ... P62424 38942792
    896251 8yoo:LH (2.0) BS01 rna N/A GO:0002181 ... P32969 38942792
    896252 8yoo:LI (2.0) BS01 rna N/A GO:0000027 ... P27635 38942792
    896253 8yoo:LI (2.0) BS02 rna N/A GO:0000027 ... P27635 38942792
    896254 8yoo:LJ (2.0) BS01 rna N/A GO:0000027 ... P62913 38942792
    896255 8yoo:LJ (2.0) BS02 rna N/A GO:0000027 ... P62913 38942792
    896256 8yoo:LL (2.0) BS01 rna N/A GO:0001824 ... P26373 38942792
    896257 8yoo:LL (2.0) BS02 rna N/A GO:0001824 ... P26373 38942792
    896258 8yoo:LM (2.0) BS01 rna N/A GO:0002181 ... P50914 38942792
    896259 8yoo:LN (2.0) BS01 rna N/A GO:0002181 ... P61313 38942792
    896260 8yoo:LN (2.0) BS02 rna N/A GO:0002181 ... P61313 38942792
    896261 8yoo:LO (2.0) BS01 rna N/A GO:0002181 ... P40429 38942792
    896262 8yoo:LP (2.0) BS01 rna N/A GO:0002181 ... P18621 38942792
    896263 8yoo:LP (2.0) BS02 rna N/A GO:0002181 ... P18621 38942792
    896264 8yoo:LQ (2.0) BS01 rna N/A GO:0002181 ... Q07020 38942792
    896265 8yoo:LR (2.0) BS01 rna N/A GO:0002181 ... P84098 38942792
    896266 8yoo:LR (2.0) BS02 rna N/A GO:0002181 ... P84098 38942792
    896267 8yoo:LS (2.0) BS01 rna N/A GO:0002181 ... Q02543 38942792
    896268 8yoo:LS (2.0) BS02 rna N/A GO:0002181 ... Q02543 38942792
    896269 8yoo:LT (2.0) BS01 rna N/A GO:0002181 ... P46778 38942792
    896270 8yoo:LT (2.0) BS02 rna N/A GO:0002181 ... P46778 38942792
    896271 8yoo:LU (2.0) BS01 rna N/A GO:0002181 ... P35268 38942792
    896272 8yoo:LV (2.0) BS01 rna N/A GO:0000122 ... P62829 38942792
    896273 8yoo:LW (2.0) BS01 rna N/A GO:0000027 ... P83731 38942792
    896274 8yoo:LW (2.0) BS02 rna N/A GO:0000027 ... P83731 38942792
    896275 8yoo:LX (2.0) BS01 rna N/A GO:0000027 ... P62750 38942792
    896276 8yoo:LX (2.0) BS02 rna N/A GO:0000027 ... P62750 38942792
    896277 8yoo:LY (2.0) BS01 rna N/A GO:0002181 ... P61254 38942792
    896278 8yoo:LY (2.0) BS02 rna N/A GO:0002181 ... P61254 38942792
    896279 8yoo:LZ (2.0) BS01 rna N/A GO:0002181 ... P61353 38942792
    896280 8yoo:La (2.0) BS01 rna N/A GO:0002181 ... P46776 38942792
    896281 8yoo:Lb (2.0) BS01 rna N/A GO:0002181 ... P47914 38942792
    896282 8yoo:Lc (2.0) BS01 rna N/A GO:0002181 ... P62888 38942792
    896283 8yoo:Ld (2.0) BS01 rna N/A GO:0002181 ... P62899 38942792
    896284 8yoo:Le (2.0) BS01 rna N/A GO:0002181 ... P62910 38942792
    896285 8yoo:Le (2.0) BS02 MG N/A GO:0002181 ... P62910 38942792
    896286 8yoo:Lf (2.0) BS01 rna N/A GO:0000049 ... P18077 38942792
    896287 8yoo:Lg (2.0) BS01 rna N/A GO:0002181 ... P49207 38942792
    896288 8yoo:Lg (2.0) BS02 MG N/A GO:0002181 ... P49207 38942792
    896289 8yoo:Lg (2.0) BS03 ZN N/A GO:0002181 ... P49207 38942792
    896290 8yoo:Lh (2.0) BS01 rna N/A GO:0000463 ... P42766 38942792
    896291 8yoo:Lh (2.0) BS02 rna N/A GO:0000463 ... P42766 38942792
    896292 8yoo:Li (2.0) BS01 rna N/A GO:0002181 ... Q9Y3U8 38942792
    896293 8yoo:Lj (2.0) BS01 rna N/A GO:0002181 ... P61927 38942792
    896294 8yoo:Lj (2.0) BS02 rna N/A GO:0002181 ... P61927 38942792
    896295 8yoo:Lj (2.0) BS03 ZN N/A GO:0002181 ... P61927 38942792
    896296 8yoo:Lk (2.0) BS01 rna N/A GO:0001501 ... P63173 38942792
    896297 8yoo:Ll (2.0) BS01 rna N/A GO:0002181 ... P62891 38942792
    896298 8yoo:Ll (2.0) BS02 rna N/A GO:0002181 ... P62891 38942792
    896299 8yoo:Lm (2.0) BS01 rna N/A GO:0002181 ... P62987 38942792
    896300 8yoo:Lm (2.0) BS02 ZN N/A GO:0002181 ... P62987 38942792
    896301 8yoo:Lo (2.0) BS01 rna N/A GO:0002181 ... P83881 38942792
    896302 8yoo:Lo (2.0) BS02 ZN N/A GO:0002181 ... P83881 38942792
    896303 8yoo:Lp (2.0) BS01 rna N/A GO:0002181 ... P61513 38942792
    896304 8yoo:Lp (2.0) BS02 ZN N/A GO:0002181 ... P61513 38942792
    896305 8yoo:Lr (2.0) BS01 rna N/A GO:0002181 ... P46779 38942792
    896306 8yoo:Ls (2.0) BS01 rna N/A GO:0000027 ... P05388 38942792
    896307 8yoo:Lt (2.0) BS01 rna N/A GO:0002181 ... P30050 38942792
    896308 8yoo:SA (2.0) BS01 rna N/A GO:0000028 ... P08865 38942792
    896309 8yoo:SB (2.0) BS01 rna N/A GO:0002181 ... P61247 38942792
    896310 8yoo:SC (2.0) BS01 rna N/A GO:0002181 ... P15880 38942792
    896311 8yoo:SD (2.0) BS01 rna N/A GO:0000977 ... P23396 38942792
    896312 8yoo:SE (2.0) BS01 rna N/A GO:0002181 ... P62701 38942792
    896313 8yoo:SF (2.0) BS01 rna N/A GO:0000028 ... P46782 38942792
    896314 8yoo:SG (2.0) BS01 rna N/A GO:0000082 ... P62753 38942792
    896315 8yoo:SH (2.0) BS01 rna N/A GO:0001843 ... P62081 38942792
    896316 8yoo:SI (2.0) BS01 rna N/A GO:0000462 ... P62241 38942792
    896317 8yoo:SI (2.0) BS02 rna N/A GO:0000462 ... P62241 38942792
    896318 8yoo:SJ (2.0) BS01 rna N/A GO:0002181 ... P46781 38942792
    896319 8yoo:SK (2.0) BS01 rna N/A GO:0002181 ... P46783 38942792
    896320 8yoo:SL (2.0) BS01 rna N/A GO:0002181 ... P62280 38942792
    896321 8yoo:SL (2.0) BS02 rna N/A GO:0002181 ... P62280 38942792
    896322 8yoo:SM (2.0) BS01 rna N/A GO:0002181 ... P25398 38942792
    896323 8yoo:SN (2.0) BS01 rna N/A GO:0002181 ... P62277 38942792
    896324 8yoo:SN (2.0) BS02 rna N/A GO:0002181 ... P62277 38942792
    896325 8yoo:SO (2.0) BS01 rna N/A GO:0000028 ... P62263 38942792
    896326 8yoo:SP (2.0) BS01 rna N/A GO:0000028 ... P62841 38942792
    896327 8yoo:SQ (2.0) BS01 rna N/A GO:0000462 ... P62249 38942792
    896328 8yoo:SR (2.0) BS01 rna N/A GO:0002181 ... P08708 38942792
    896329 8yoo:SS (2.0) BS01 rna N/A GO:0002181 ... P62269 38942792
    896330 8yoo:ST (2.0) BS01 rna N/A GO:0000028 ... P39019 38942792
    896331 8yoo:SU (2.0) BS01 rna N/A GO:0002181 ... P60866 38942792
    896332 8yoo:SW (2.0) BS01 rna N/A GO:0002181 ... P62244 38942792
    896333 8yoo:SX (2.0) BS01 rna N/A GO:0002181 ... P62266 38942792
    896334 8yoo:SY (2.0) BS01 rna N/A GO:0002181 ... P62847 38942792
    896335 8yoo:SZ (2.0) BS01 rna N/A GO:0002181 ... P62851 38942792
    896336 8yoo:Sa (2.0) BS01 rna N/A GO:0002181 ... P62854 38942792
    896337 8yoo:Sa (2.0) BS02 ZN N/A GO:0002181 ... P62854 38942792
    896338 8yoo:Sb (2.0) BS01 rna N/A GO:0000028 ... P42677 38942792
    896339 8yoo:Sc (2.0) BS01 rna N/A GO:0000028 ... P62857 38942792
    896340 8yoo:Sd (2.0) BS01 rna N/A GO:0002181 ... P62273 38942792
    896341 8yoo:Sd (2.0) BS02 ZN N/A GO:0002181 ... P62273 38942792
    896342 8yoo:Se (2.0) BS01 rna N/A N/A P62861 38942792
    896343 8yoo:Sf (2.0) BS01 rna N/A GO:0002181 ... P62979 38942792
    896344 8yoo:Sf (2.0) BS02 ZN N/A GO:0002181 ... P62979 38942792
    896345 8yoo:Sg (2.0) BS01 rna N/A GO:0001891 ... P63244 38942792
    896346 8yop:LA (2.2) BS01 rna N/A GO:0002181 ... P62917 38942792
    896347 8yop:LA (2.2) BS02 rna N/A GO:0002181 ... P62917 38942792
    896348 8yop:LA (2.2) BS03 MG N/A GO:0002181 ... P62917 38942792
    896349 8yop:LB (2.2) BS01 rna N/A GO:0002181 ... P39023 38942792
    896350 8yop:LC (2.2) BS01 rna N/A GO:0002181 ... P36578 38942792
    896351 8yop:LC (2.2) BS02 rna N/A GO:0002181 ... P36578 38942792
    896352 8yop:LD (2.2) BS01 rna N/A GO:0000027 ... P46777 38942792
    896353 8yop:LD (2.2) BS02 rna N/A GO:0000027 ... P46777 38942792
    896354 8yop:LE (2.2) BS01 rna N/A GO:0000027 ... Q02878 38942792
    896355 8yop:LF (2.2) BS01 rna N/A GO:0000463 ... P18124 38942792
    896356 8yop:LF (2.2) BS02 rna N/A GO:0000463 ... P18124 38942792
    896357 8yop:LG (2.2) BS01 rna N/A GO:0000470 ... P62424 38942792
    896358 8yop:LG (2.2) BS02 rna N/A GO:0000470 ... P62424 38942792
    896359 8yop:LH (2.2) BS01 rna N/A GO:0002181 ... P32969 38942792
    896360 8yop:LI (2.2) BS01 rna N/A GO:0000027 ... P27635 38942792
    896361 8yop:LI (2.2) BS02 rna N/A GO:0000027 ... P27635 38942792
    896362 8yop:LJ (2.2) BS01 rna N/A GO:0000027 ... P62913 38942792
    896363 8yop:LJ (2.2) BS02 rna N/A GO:0000027 ... P62913 38942792
    896364 8yop:LL (2.2) BS01 rna N/A GO:0001824 ... P26373 38942792
    896365 8yop:LL (2.2) BS02 rna N/A GO:0001824 ... P26373 38942792
    896366 8yop:LM (2.2) BS01 rna N/A GO:0002181 ... P50914 38942792
    896367 8yop:LN (2.2) BS01 rna N/A GO:0002181 ... P61313 38942792
    896368 8yop:LN (2.2) BS02 rna N/A GO:0002181 ... P61313 38942792
    896369 8yop:LO (2.2) BS01 rna N/A GO:0002181 ... P40429 38942792
    896370 8yop:LP (2.2) BS01 rna N/A GO:0002181 ... P18621 38942792
    896371 8yop:LP (2.2) BS02 rna N/A GO:0002181 ... P18621 38942792
    896372 8yop:LQ (2.2) BS01 rna N/A GO:0002181 ... Q07020 38942792
    896373 8yop:LR (2.2) BS01 rna N/A GO:0002181 ... P84098 38942792
    896374 8yop:LR (2.2) BS02 rna N/A GO:0002181 ... P84098 38942792
    896375 8yop:LS (2.2) BS01 rna N/A GO:0002181 ... Q02543 38942792
    896376 8yop:LS (2.2) BS02 rna N/A GO:0002181 ... Q02543 38942792
    896377 8yop:LT (2.2) BS01 rna N/A GO:0002181 ... P46778 38942792
    896378 8yop:LT (2.2) BS02 rna N/A GO:0002181 ... P46778 38942792
    896379 8yop:LU (2.2) BS01 rna N/A GO:0002181 ... P35268 38942792
    896380 8yop:LV (2.2) BS01 rna N/A GO:0000122 ... P62829 38942792
    896381 8yop:LW (2.2) BS01 rna N/A GO:0000027 ... P83731 38942792
    896382 8yop:LW (2.2) BS02 rna N/A GO:0000027 ... P83731 38942792
    896383 8yop:LX (2.2) BS01 rna N/A GO:0000027 ... P62750 38942792
    896384 8yop:LX (2.2) BS02 rna N/A GO:0000027 ... P62750 38942792
    896385 8yop:LY (2.2) BS01 rna N/A GO:0002181 ... P61254 38942792
    896386 8yop:LY (2.2) BS02 rna N/A GO:0002181 ... P61254 38942792
    896387 8yop:LZ (2.2) BS01 rna N/A GO:0002181 ... P61353 38942792
    896388 8yop:La (2.2) BS01 rna N/A GO:0002181 ... P46776 38942792
    896389 8yop:Lb (2.2) BS01 rna N/A GO:0002181 ... P47914 38942792
    896390 8yop:Lc (2.2) BS01 rna N/A GO:0002181 ... P62888 38942792
    896391 8yop:Ld (2.2) BS01 rna N/A GO:0002181 ... P62899 38942792
    896392 8yop:Le (2.2) BS01 rna N/A GO:0002181 ... P62910 38942792
    896393 8yop:Le (2.2) BS02 MG N/A GO:0002181 ... P62910 38942792
    896394 8yop:Lf (2.2) BS01 rna N/A GO:0000049 ... P18077 38942792
    896395 8yop:Lg (2.2) BS01 rna N/A GO:0002181 ... P49207 38942792
    896396 8yop:Lg (2.2) BS02 MG N/A GO:0002181 ... P49207 38942792
    896397 8yop:Lg (2.2) BS03 ZN N/A GO:0002181 ... P49207 38942792
    896398 8yop:Lh (2.2) BS01 rna N/A GO:0000463 ... P42766 38942792
    896399 8yop:Lh (2.2) BS02 rna N/A GO:0000463 ... P42766 38942792
    896400 8yop:Li (2.2) BS01 rna N/A GO:0002181 ... Q9Y3U8 38942792
    Reference:
    • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023)(download the PDF file).
    • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

    zhanglabzhanggroup.org | +65-6601-1241 | Computing 1, 13 Computing Drive, Singapore 117417