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BioLiP Library
Download all results in tab-seperated text for 903398 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    895801 8ye4:C (3.2) BS01 peptide N/A N/A Q6IVJ7 39002680
    895802 8ye4:G (3.2) BS01 peptide N/A N/A N/A 39002680
    895803 8ye4:H (3.2) BS01 peptide N/A N/A N/A 39002680
    895804 8ye4:I (3.2) BS01 peptide N/A N/A N/A 39002680
    895805 8ye4:J (3.2) BS01 peptide N/A N/A N/A 39002680
    895806 8ye6:A (2.95) BS01 rna N/A N/A Q99ZW2 38842649
    895807 8ye6:B (2.95) BS01 rna N/A N/A N/A 38842649
    895808 8ye9:A (3.43) BS01 rna N/A N/A Q99ZW2 38842649
    895809 8ye9:B (3.43) BS01 rna N/A N/A N/A 38842649
    895810 8yej:A (2.86) BS01 RET N/A N/A L1K1K8 39232582
    895811 8yek:A (2.73) BS01 RET N/A N/A L1K1K8 39232582
    895812 8yel:A (2.71) BS01 RET N/A N/A A0A3G1I4H9 39232582
    895813 8yeo:A (3.44) BS01 rna N/A N/A N/A 39047725
    895814 8yeo:A (3.44) BS02 rna N/A N/A N/A 39047725
    895815 8yeo:B (3.44) BS01 rna N/A N/A N/A 39047725
    895816 8yeo:D (3.44) BS01 rna N/A N/A N/A 39047725
    895817 8yeo:D (3.44) BS02 rna N/A N/A N/A 39047725
    895818 8yeo:E (3.44) BS01 rna N/A N/A N/A 39047725
    895819 8yeo:E (3.44) BS02 rna N/A N/A N/A 39047725
    895820 8yeo:F (3.44) BS01 rna N/A N/A N/A 39047725
    895821 8yeo:F (3.44) BS02 rna N/A N/A N/A 39047725
    895822 8yeo:G (3.44) BS01 rna N/A N/A N/A 39047725
    895823 8yeo:G (3.44) BS02 rna N/A N/A N/A 39047725
    895824 8yeo:H (3.44) BS01 rna N/A N/A N/A 39047725
    895825 8yeo:H (3.44) BS02 rna N/A N/A N/A 39047725
    895826 8yeo:I (3.44) BS01 rna N/A N/A N/A 39047725
    895827 8yeo:I (3.44) BS02 rna N/A N/A N/A 39047725
    895828 8yeo:J (3.44) BS01 rna N/A N/A N/A 39047725
    895829 8yeo:J (3.44) BS02 rna N/A N/A N/A 39047725
    895830 8yeo:J (3.44) BS03 rna N/A N/A N/A 39047725
    895831 8yey:A (2.0) BS01 dna N/A N/A Q15650 38870938
    895832 8yey:C (2.0) BS01 dna N/A N/A Q15650 38870938
    895833 8yf1:A (3.38) BS01 VLX ? GO:0005783 ... Q7L0J3 N/A
    895834 8yf1:B (3.38) BS01 VLX ? GO:0005783 ... Q7L0J3 N/A
    895835 8yf6:A (3.23) BS01 CA N/A N/A Q9E6H7 39087906
    895836 8yf6:A (3.23) BS02 CA N/A N/A Q9E6H7 39087906
    895837 8yf6:B (3.23) BS01 CA N/A N/A Q9E6H7 39087906
    895838 8yf6:B (3.23) BS02 CA N/A N/A Q9E6H7 39087906
    895839 8yf6:C (3.23) BS01 CA N/A N/A Q9E6H7 39087906
    895840 8yf6:C (3.23) BS02 CA N/A N/A Q9E6H7 39087906
    895841 8yf7:A (2.82) BS01 CA N/A N/A Q9E6H7 39087906
    895842 8yf7:A (2.82) BS02 CA N/A N/A Q9E6H7 39087906
    895843 8yf7:B (2.82) BS01 CA N/A N/A Q9E6H7 39087906
    895844 8yf7:B (2.82) BS02 CA N/A N/A Q9E6H7 39087906
    895845 8yf7:C (2.82) BS01 CA N/A N/A Q9E6H7 39087906
    895846 8yf7:C (2.82) BS02 CA N/A N/A Q9E6H7 39087906
    895847 8yf8:A (3.52) BS01 CA N/A N/A Q9E6H7 39087906
    895848 8yf8:B (3.52) BS01 CA N/A N/A Q9E6H7 39087906
    895849 8yf8:B (3.52) BS02 CA N/A N/A Q9E6H7 39087906
    895850 8yf8:C (3.52) BS01 CA N/A N/A Q9E6H7 39087906
    895851 8yf8:C (3.52) BS02 CA N/A N/A Q9E6H7 39087906
    895852 8yf9:A (3.12) BS01 CA N/A N/A Q9E6H7 39087906
    895853 8yf9:A (3.12) BS02 CA N/A N/A Q9E6H7 39087906
    895854 8yf9:B (3.12) BS01 CA N/A N/A Q9E6H7 39087906
    895855 8yf9:B (3.12) BS02 CA N/A N/A Q9E6H7 39087906
    895856 8yf9:C (3.12) BS01 CA N/A N/A Q9E6H7 39087906
    895857 8yf9:C (3.12) BS02 CA N/A N/A Q9E6H7 39087906
    895858 8yfi:A (2.02) BS01 dna N/A N/A Q15650 38870938
    895859 8yfj:A (1.84) BS01 dna N/A N/A Q15650 38870938
    895860 8yfk:A (2.0) BS01 peptide N/A N/A Q8TDY2 39059492
    895861 8yfk:A (2.0) BS02 MG N/A N/A Q8TDY2 39059492
    895862 8yfk:C (2.0) BS01 peptide N/A N/A Q8TDY2 39059492
    895863 8yfk:C (2.0) BS02 MG N/A N/A Q8TDY2 39059492
    895864 8yfk:E (2.0) BS01 peptide N/A N/A Q8TDY2 39059492
    895865 8yfk:G (2.0) BS01 peptide N/A N/A Q8TDY2 39059492
    895866 8yfl:A (1.5) BS01 peptide N/A N/A Q8TDY2 39059492
    895867 8yfl:C (1.5) BS01 peptide N/A N/A Q8TDY2 39059492
    895868 8yfm:A (1.5) BS01 peptide N/A N/A Q8TDY2 39059492
    895869 8yfm:D (1.5) BS01 peptide N/A N/A Q8TDY2 39059492
    895870 8yfn:A (2.3) BS01 peptide N/A N/A Q8TDY2 39059492
    895871 8yfn:A (2.3) BS02 MG N/A N/A Q8TDY2 39059492
    895872 8yfn:C (2.3) BS01 peptide N/A N/A Q8TDY2 39059492
    895873 8yfn:C (2.3) BS02 MG N/A N/A Q8TDY2 39059492
    895874 8yfq:A (3.3) BS01 dna N/A N/A C4R4Y0 39245712
    895875 8yfq:A (3.3) BS02 dna N/A N/A C4R4Y0 39245712
    895876 8yfq:A (3.3) BS03 rna N/A N/A C4R4Y0 39245712
    895877 8yfq:A (3.3) BS04 ZN N/A N/A C4R4Y0 39245712
    895878 8yfq:A (3.3) BS05 ZN N/A N/A C4R4Y0 39245712
    895879 8yfq:A (3.3) BS06 MG N/A N/A C4R4Y0 39245712
    895880 8yfq:B (3.3) BS01 dna N/A N/A C4QZQ7 39245712
    895881 8yfq:B (3.3) BS02 rna N/A N/A C4QZQ7 39245712
    895882 8yfq:B (3.3) BS03 ZN N/A N/A C4QZQ7 39245712
    895883 8yfq:C (3.3) BS01 ZN N/A N/A C4R7L2 39245712
    895884 8yfq:E (3.3) BS01 dna N/A N/A C4R3P8 39245712
    895885 8yfq:E (3.3) BS02 dna N/A N/A C4R3P8 39245712
    895886 8yfq:I (3.3) BS01 ZN N/A N/A F2QPE6 39245712
    895887 8yfq:I (3.3) BS02 ZN N/A N/A F2QPE6 39245712
    895888 8yfq:J (3.3) BS01 ZN N/A N/A C4R009 39245712
    895889 8yfq:L (3.3) BS01 ZN N/A N/A F2QMI1 39245712
    895890 8yfq:R (3.3) BS01 rna N/A N/A F2QV79 39245712
    895891 8yfr:A (3.4) BS01 ZN N/A N/A C4R4Y0 39245712
    895892 8yfr:A (3.4) BS02 ZN N/A N/A C4R4Y0 39245712
    895893 8yfr:A (3.4) BS03 MG N/A N/A C4R4Y0 39245712
    895894 8yfr:B (3.4) BS01 ZN N/A N/A C4QZQ7 39245712
    895895 8yfr:C (3.4) BS01 ZN N/A N/A C4R7L2 39245712
    895896 8yfr:I (3.4) BS01 ZN N/A N/A F2QPE6 39245712
    895897 8yfr:I (3.4) BS02 ZN N/A N/A F2QPE6 39245712
    895898 8yfr:J (3.4) BS01 ZN N/A N/A C4R009 39245712
    895899 8yfr:L (3.4) BS01 ZN N/A N/A F2QMI1 39245712
    895900 8yge:A (2.76) BS01 dna N/A N/A A0A0C5B080 39166497
    895901 8yge:A (2.76) BS02 dna N/A N/A A0A0C5B080 39166497
    895902 8yge:A (2.76) BS03 ASW N/A N/A A0A0C5B080 39166497
    895903 8yge:B (2.76) BS01 dna N/A N/A A0A0C5B080 39166497
    895904 8yge:B (2.76) BS02 dna N/A N/A A0A0C5B080 39166497
    895905 8yge:B (2.76) BS03 ASW N/A N/A A0A0C5B080 39166497
    895906 8ygj:A (3.2) BS01 rna 3.1.-.- GO:0003677 ... Q99ZW2 38811740
    895907 8ygj:A (3.2) BS02 dna 3.1.-.- GO:0003677 ... Q99ZW2 38811740
    895908 8ygj:A (3.2) BS03 dna 3.1.-.- GO:0003677 ... Q99ZW2 38811740
    895909 8ygj:E (3.2) BS01 rna ? N/A Q8UN00 38811740
    895910 8ygj:E (3.2) BS02 dna ? N/A Q8UN00 38811740
    895911 8ygw:A (3.301) BS01 B96 2.7.11.24 GO:0000165 ... Q15759 N/A
    895912 8ygy:A (2.401) BS01 FUC 3.4.21.35 GO:0003073 ... P06870 N/A
    895913 8yh9:A (3.35) BS01 rna N/A N/A N/A 39047725
    895914 8yh9:B (3.35) BS01 rna N/A N/A N/A 39047725
    895915 8yh9:D (3.35) BS01 rna N/A N/A N/A 39047725
    895916 8yh9:E (3.35) BS01 rna N/A N/A N/A 39047725
    895917 8yh9:F (3.35) BS01 rna N/A N/A N/A 39047725
    895918 8yh9:G (3.35) BS01 rna N/A N/A N/A 39047725
    895919 8yh9:H (3.35) BS01 rna N/A N/A N/A 39047725
    895920 8yh9:I (3.35) BS01 rna N/A N/A N/A 39047725
    895921 8yh9:J (3.35) BS01 rna N/A N/A N/A 39047725
    895922 8yha:A (3.4) BS01 rna N/A GO:0051607 ... A0A1V6F8C5 39047725
    895923 8yha:A (3.4) BS02 dna N/A GO:0051607 ... A0A1V6F8C5 39047725
    895924 8yha:A (3.4) BS03 ZN N/A GO:0051607 ... A0A1V6F8C5 39047725
    895925 8yha:B (3.4) BS01 rna N/A GO:0016787 ... A0A1V6F8C4 39047725
    895926 8yha:B (3.4) BS02 dna N/A GO:0016787 ... A0A1V6F8C4 39047725
    895927 8yha:D (3.4) BS01 rna N/A N/A A0A1V6F8B5 39047725
    895928 8yha:D (3.4) BS02 dna N/A N/A A0A1V6F8B5 39047725
    895929 8yha:E (3.4) BS01 rna N/A N/A A0A1V6F8B5 39047725
    895930 8yha:E (3.4) BS02 dna N/A N/A A0A1V6F8B5 39047725
    895931 8yha:F (3.4) BS01 rna N/A N/A A0A1V6F8B5 39047725
    895932 8yha:F (3.4) BS02 dna N/A N/A A0A1V6F8B5 39047725
    895933 8yha:G (3.4) BS01 rna N/A N/A A0A1V6F8B5 39047725
    895934 8yha:G (3.4) BS02 dna N/A N/A A0A1V6F8B5 39047725
    895935 8yha:H (3.4) BS01 rna N/A N/A A0A1V6F8B5 39047725
    895936 8yha:H (3.4) BS02 dna N/A N/A A0A1V6F8B5 39047725
    895937 8yha:I (3.4) BS01 rna N/A N/A A0A1V6F8B5 39047725
    895938 8yha:I (3.4) BS02 dna N/A N/A A0A1V6F8B5 39047725
    895939 8yha:J (3.4) BS01 rna N/A N/A A0A1V6F8D1 39047725
    895940 8yha:J (3.4) BS02 dna N/A N/A A0A1V6F8D1 39047725
    895941 8yha:J (3.4) BS03 ZN N/A N/A A0A1V6F8D1 39047725
    895942 8yha:K (3.4) BS01 dna N/A N/A A0A1V6F8C9 39047725
    895943 8yhd:A (2.93) BS01 rna N/A N/A N/A 39143216
    895944 8yhd:A (2.93) BS02 ZN N/A N/A N/A 39143216
    895945 8yhd:B (2.93) BS01 rna N/A N/A N/A 39143216
    895946 8yhd:C (2.93) BS01 rna N/A N/A N/A 39143216
    895947 8yhd:C (2.93) BS02 rna N/A N/A N/A 39143216
    895948 8yhd:C (2.93) BS03 ZN N/A N/A N/A 39143216
    895949 8yhd:D (2.93) BS01 rna N/A N/A N/A 39143216
    895950 8yhd:D (2.93) BS02 rna N/A N/A N/A 39143216
    895951 8yhd:D (2.93) BS03 ZN N/A N/A N/A 39143216
    895952 8yhd:E (2.93) BS01 rna N/A N/A N/A 39143216
    895953 8yhd:E (2.93) BS02 rna N/A N/A N/A 39143216
    895954 8yhd:E (2.93) BS03 ZN N/A N/A N/A 39143216
    895955 8yhd:F (2.93) BS01 rna N/A N/A N/A 39143216
    895956 8yhd:F (2.93) BS02 rna N/A N/A N/A 39143216
    895957 8yhd:F (2.93) BS03 ZN N/A N/A N/A 39143216
    895958 8yhd:G (2.93) BS01 rna N/A N/A N/A 39143216
    895959 8yhd:G (2.93) BS02 ZN N/A N/A N/A 39143216
    895960 8yhd:H (2.93) BS01 rna N/A N/A N/A 39143216
    895961 8yhd:H (2.93) BS02 ZN N/A N/A N/A 39143216
    895962 8yhd:H (2.93) BS03 ZN N/A N/A N/A 39143216
    895963 8yhd:I (2.93) BS01 rna N/A N/A N/A 39143216
    895964 8yhd:J (2.93) BS01 rna N/A N/A N/A 39143216
    895965 8yhd:J (2.93) BS02 rna N/A N/A N/A 39143216
    895966 8yhd:J (2.93) BS03 ZN N/A N/A N/A 39143216
    895967 8yhd:K (2.93) BS01 rna N/A N/A N/A 39143216
    895968 8yhd:L (2.93) BS01 rna N/A N/A N/A 39143216
    895969 8yhd:O (2.93) BS01 rna N/A N/A N/A 39143216
    895970 8yhd:O (2.93) BS02 rna N/A N/A N/A 39143216
    895971 8yhd:O (2.93) BS03 ZN N/A N/A N/A 39143216
    895972 8yhe:A (3.07) BS01 rna N/A N/A N/A 39143216
    895973 8yhe:A (3.07) BS02 ZN N/A N/A N/A 39143216
    895974 8yhe:B (3.07) BS01 rna N/A N/A N/A 39143216
    895975 8yhe:B (3.07) BS02 rna N/A N/A N/A 39143216
    895976 8yhe:B (3.07) BS03 ZN N/A N/A N/A 39143216
    895977 8yhe:C (3.07) BS01 rna N/A N/A N/A 39143216
    895978 8yhe:C (3.07) BS02 rna N/A N/A N/A 39143216
    895979 8yhe:C (3.07) BS03 ZN N/A N/A N/A 39143216
    895980 8yhe:D (3.07) BS01 rna N/A N/A N/A 39143216
    895981 8yhe:D (3.07) BS02 rna N/A N/A N/A 39143216
    895982 8yhe:D (3.07) BS03 ZN N/A N/A N/A 39143216
    895983 8yhe:E (3.07) BS01 rna N/A N/A N/A 39143216
    895984 8yhe:E (3.07) BS02 rna N/A N/A N/A 39143216
    895985 8yhe:E (3.07) BS03 ZN N/A N/A N/A 39143216
    895986 8yhe:F (3.07) BS01 rna N/A N/A N/A 39143216
    895987 8yhe:F (3.07) BS02 rna N/A N/A N/A 39143216
    895988 8yhe:F (3.07) BS03 ZN N/A N/A N/A 39143216
    895989 8yhe:G (3.07) BS01 rna N/A N/A N/A 39143216
    895990 8yhe:G (3.07) BS02 rna N/A N/A N/A 39143216
    895991 8yhe:H (3.07) BS01 rna N/A N/A N/A 39143216
    895992 8yhe:H (3.07) BS02 ZN N/A N/A N/A 39143216
    895993 8yhe:I (3.07) BS01 rna N/A N/A N/A 39143216
    895994 8yhe:J (3.07) BS01 rna N/A N/A N/A 39143216
    895995 8yhe:J (3.07) BS02 rna N/A N/A N/A 39143216
    895996 8yhe:J (3.07) BS03 ZN N/A N/A N/A 39143216
    895997 8yhe:K (3.07) BS01 rna N/A N/A N/A 39143216
    895998 8yhe:L (3.07) BS01 rna N/A N/A N/A 39143216
    895999 8yhf:A (1.4) BS01 A1D6I 2.7.11.30 GO:0004672 ... P36897 N/A
    896000 8yhh:A (1.95) BS01 ADP ? GO:0003777 ... P52732 N/A
    Reference:
    • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023)(download the PDF file).
    • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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