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●TM-score ●TM-align ●US-align ●MM-align ●RNA-align ●NW-align ●LS-align ●EDTSurf ●MVP ●MVP-Fit ●SPICKER ●HAAD ●PSSpred ●3DRobot ●MR-REX ●I-TASSER-MR ●SVMSEQ ●NeBcon ●ResPRE ●TripletRes ●DeepPotential ●WDL-RF ●ATPbind ●DockRMSD ●DeepMSA ●FASPR ●EM-Refiner ●GPU-I-TASSER

●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
Download all results in tab-seperated text for 903398 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    895201 8y0x:LC (3.3) BS01 rna ? GO:0002181 ... P36578 38698775
    895202 8y0x:LC (3.3) BS02 rna ? GO:0002181 ... P36578 38698775
    895203 8y0x:LD (3.3) BS01 rna ? GO:0000027 ... P46777 38698775
    895204 8y0x:LD (3.3) BS02 rna ? GO:0000027 ... P46777 38698775
    895205 8y0x:LE (3.3) BS01 rna ? GO:0000027 ... Q02878 38698775
    895206 8y0x:LF (3.3) BS01 rna ? GO:0000463 ... P18124 38698775
    895207 8y0x:LF (3.3) BS02 rna ? GO:0000463 ... P18124 38698775
    895208 8y0x:LG (3.3) BS01 rna ? GO:0000470 ... P62424 38698775
    895209 8y0x:LG (3.3) BS02 rna ? GO:0000470 ... P62424 38698775
    895210 8y0x:LH (3.3) BS01 rna ? GO:0002181 ... P32969 38698775
    895211 8y0x:LI (3.3) BS01 rna ? GO:0000027 ... Q96L21 38698775
    895212 8y0x:LI (3.3) BS02 rna ? GO:0000027 ... Q96L21 38698775
    895213 8y0x:LJ (3.3) BS01 rna ? GO:0000027 ... P62913 38698775
    895214 8y0x:LJ (3.3) BS02 rna ? GO:0000027 ... P62913 38698775
    895215 8y0x:LL (3.3) BS01 rna ? GO:0001824 ... P26373 38698775
    895216 8y0x:LL (3.3) BS02 rna ? GO:0001824 ... P26373 38698775
    895217 8y0x:LM (3.3) BS01 rna ? GO:0002181 ... P50914 38698775
    895218 8y0x:LN (3.3) BS01 rna ? GO:0002181 ... P61313 38698775
    895219 8y0x:LN (3.3) BS02 rna ? GO:0002181 ... P61313 38698775
    895220 8y0x:LO (3.3) BS01 rna ? GO:0002181 ... P40429 38698775
    895221 8y0x:LP (3.3) BS01 rna ? GO:0002181 ... P18621 38698775
    895222 8y0x:LP (3.3) BS02 rna ? GO:0002181 ... P18621 38698775
    895223 8y0x:LQ (3.3) BS01 rna ? GO:0002181 ... Q07020 38698775
    895224 8y0x:LR (3.3) BS01 rna ? GO:0002181 ... P84098 38698775
    895225 8y0x:LR (3.3) BS02 rna ? GO:0002181 ... P84098 38698775
    895226 8y0x:LS (3.3) BS01 rna ? GO:0002181 ... Q02543 38698775
    895227 8y0x:LS (3.3) BS02 rna ? GO:0002181 ... Q02543 38698775
    895228 8y0x:LT (3.3) BS01 rna ? GO:0002181 ... P46778 38698775
    895229 8y0x:LT (3.3) BS02 rna ? GO:0002181 ... P46778 38698775
    895230 8y0x:LU (3.3) BS01 rna ? GO:0002181 ... P35268 38698775
    895231 8y0x:LV (3.3) BS01 rna ? GO:0000122 ... P62829 38698775
    895232 8y0x:LW (3.3) BS01 rna ? GO:0000027 ... P83731 38698775
    895233 8y0x:LX (3.3) BS01 rna ? GO:0000027 ... P62750 38698775
    895234 8y0x:LX (3.3) BS02 rna ? GO:0000027 ... P62750 38698775
    895235 8y0x:LY (3.3) BS01 rna ? GO:0002181 ... P61254 38698775
    895236 8y0x:LY (3.3) BS02 rna ? GO:0002181 ... P61254 38698775
    895237 8y0x:LZ (3.3) BS01 rna ? GO:0002181 ... P61353 38698775
    895238 8y0x:La (3.3) BS01 rna ? GO:0002181 ... P46776 38698775
    895239 8y0x:Lb (3.3) BS01 rna ? GO:0002181 ... P47914 38698775
    895240 8y0x:Lc (3.3) BS01 rna ? GO:0002181 ... P62888 38698775
    895241 8y0x:Ld (3.3) BS01 rna ? GO:0002181 ... P62899 38698775
    895242 8y0x:Le (3.3) BS01 rna ? GO:0002181 ... P62910 38698775
    895243 8y0x:Le (3.3) BS02 MG ? GO:0002181 ... P62910 38698775
    895244 8y0x:Lf (3.3) BS01 rna ? GO:0000049 ... P18077 38698775
    895245 8y0x:Lg (3.3) BS01 rna ? GO:0002181 ... P49207 38698775
    895246 8y0x:Lg (3.3) BS02 MG ? GO:0002181 ... P49207 38698775
    895247 8y0x:Lg (3.3) BS03 ZN ? GO:0002181 ... P49207 38698775
    895248 8y0x:Lh (3.3) BS01 rna ? GO:0000463 ... P42766 38698775
    895249 8y0x:Lh (3.3) BS02 rna ? GO:0000463 ... P42766 38698775
    895250 8y0x:Li (3.3) BS01 rna ? GO:0002181 ... Q9Y3U8 38698775
    895251 8y0x:Lj (3.3) BS01 rna ? GO:0002181 ... P61927 38698775
    895252 8y0x:Lj (3.3) BS02 rna ? GO:0002181 ... P61927 38698775
    895253 8y0x:Lj (3.3) BS03 ZN ? GO:0002181 ... P61927 38698775
    895254 8y0x:Lk (3.3) BS01 rna ? GO:0001501 ... P63173 38698775
    895255 8y0x:Ll (3.3) BS01 rna ? GO:0002181 ... P62891 38698775
    895256 8y0x:Ll (3.3) BS02 rna ? GO:0002181 ... P62891 38698775
    895257 8y0x:Lm (3.3) BS01 rna ? GO:0002181 ... P62987 38698775
    895258 8y0x:Lm (3.3) BS02 ZN ? GO:0002181 ... P62987 38698775
    895259 8y0x:Lo (3.3) BS01 rna ? GO:0002181 ... P83881 38698775
    895260 8y0x:Lo (3.3) BS02 rna ? GO:0002181 ... P83881 38698775
    895261 8y0x:Lp (3.3) BS01 rna ? GO:0002181 ... P61513 38698775
    895262 8y0x:Lp (3.3) BS02 ZN ? GO:0002181 ... P61513 38698775
    895263 8y0x:Lr (3.3) BS01 rna ? GO:0002181 ... P46779 38698775
    895264 8y0x:S (3.3) BS01 rna ? GO:0003723 ... Q8NC51 38698775
    895265 8y0x:SA (3.3) BS01 rna ? GO:0000028 ... P08865 38698775
    895266 8y0x:SB (3.3) BS01 rna ? GO:0002181 ... P61247 38698775
    895267 8y0x:SC (3.3) BS01 rna ? GO:0002181 ... P15880 38698775
    895268 8y0x:SD (3.3) BS01 rna 4.2.99.18 GO:0000977 ... P23396 38698775
    895269 8y0x:SE (3.3) BS01 rna ? GO:0002181 ... P62701 38698775
    895270 8y0x:SF (3.3) BS01 rna ? GO:0000028 ... P46782 38698775
    895271 8y0x:SG (3.3) BS01 rna ? GO:0000082 ... P62753 38698775
    895272 8y0x:SH (3.3) BS01 rna ? GO:0001843 ... P62081 38698775
    895273 8y0x:SI (3.3) BS01 rna ? GO:0000462 ... P62241 38698775
    895274 8y0x:SI (3.3) BS02 rna ? GO:0000462 ... P62241 38698775
    895275 8y0x:SJ (3.3) BS01 rna ? GO:0002181 ... P46781 38698775
    895276 8y0x:SK (3.3) BS01 rna ? GO:0002181 ... P46783 38698775
    895277 8y0x:SL (3.3) BS01 rna ? GO:0002181 ... P62280 38698775
    895278 8y0x:SN (3.3) BS01 rna ? GO:0002181 ... P62277 38698775
    895279 8y0x:SO (3.3) BS01 rna ? GO:0000028 ... P62263 38698775
    895280 8y0x:SP (3.3) BS01 rna ? GO:0000028 ... P62841 38698775
    895281 8y0x:SQ (3.3) BS01 rna ? GO:0000462 ... P62249 38698775
    895282 8y0x:SR (3.3) BS01 rna ? GO:0002181 ... P08708 38698775
    895283 8y0x:SS (3.3) BS01 rna ? GO:0002181 ... P62269 38698775
    895284 8y0x:ST (3.3) BS01 rna ? GO:0000028 ... P39019 38698775
    895285 8y0x:SU (3.3) BS01 rna ? GO:0002181 ... P60866 38698775
    895286 8y0x:SW (3.3) BS01 rna ? GO:0002181 ... P62244 38698775
    895287 8y0x:SX (3.3) BS01 rna ? GO:0002181 ... P62266 38698775
    895288 8y0x:SY (3.3) BS01 rna ? GO:0002181 ... P62847 38698775
    895289 8y0x:SZ (3.3) BS01 rna ? GO:0002181 ... P62851 38698775
    895290 8y0x:Sa (3.3) BS01 rna ? GO:0002181 ... P62854 38698775
    895291 8y0x:Sa (3.3) BS02 ZN ? GO:0002181 ... P62854 38698775
    895292 8y0x:Sb (3.3) BS01 rna ? GO:0000028 ... P42677 38698775
    895293 8y0x:Sc (3.3) BS01 rna ? GO:0000028 ... P62857 38698775
    895294 8y0x:Sd (3.3) BS01 rna ? GO:0002181 ... P62273 38698775
    895295 8y0x:Se (3.3) BS01 rna ? GO:0003735 ... P62861 38698775
    895296 8y0x:Sg (3.3) BS01 rna ? GO:0001891 ... P63244 38698775
    895297 8y11:A (1.77) BS01 NAD N/A N/A A0AAE4G800 38918500
    895298 8y11:B (1.77) BS01 NAD N/A N/A A0AAE4G800 38918500
    895299 8y11:D (1.77) BS01 NAD N/A N/A A0AAE4G800 38918500
    895300 8y16:A (2.98) BS01 ZN N/A N/A Q9BYF1 39013463
    895301 8y16:E (2.98) BS01 ZN N/A N/A Q9BYF1 39013463
    895302 8y16:F (2.98) BS01 ZN N/A N/A Q9BYF1 39013463
    895303 8y18:A (3.04) BS01 ZN N/A N/A Q9BYF1 39013463
    895304 8y1j:A (2.3) BS01 2KT 4.3.1.19 GO:0003941 ... Q9I6G0 38417345
    895305 8y1j:A (2.3) BS02 2KT 4.3.1.19 GO:0003941 ... Q9I6G0 38417345
    895306 8y1j:B (2.3) BS01 2KT 4.3.1.19 GO:0003941 ... Q9I6G0 38417345
    895307 8y1m:A (1.8) BS01 XYP 3.2.1.8 GO:0005576 ... P07528 38565938
    895308 8y1m:A (1.8) BS02 XYP 3.2.1.8 GO:0005576 ... P07528 38565938
    895309 8y1m:A (1.8) BS03 XYP 3.2.1.8 GO:0005576 ... P07528 38565938
    895310 8y1m:A (1.8) BS04 XYP 3.2.1.8 GO:0005576 ... P07528 38565938
    895311 8y1m:A (1.8) BS05 CA 3.2.1.8 GO:0005576 ... P07528 38565938
    895312 8y1m:A (1.8) BS06 CA 3.2.1.8 GO:0005576 ... P07528 38565938
    895313 8y1m:A (1.8) BS07 CA 3.2.1.8 GO:0005576 ... P07528 38565938
    895314 8y1m:A (1.8) BS08 CA 3.2.1.8 GO:0005576 ... P07528 38565938
    895315 8y1m:A (1.8) BS09 CA 3.2.1.8 GO:0005576 ... P07528 38565938
    895316 8y1m:B (1.8) BS01 XYP 3.2.1.8 GO:0005576 ... P07528 38565938
    895317 8y1m:B (1.8) BS02 XYP 3.2.1.8 GO:0005576 ... P07528 38565938
    895318 8y1m:B (1.8) BS03 XYP 3.2.1.8 GO:0005576 ... P07528 38565938
    895319 8y1m:B (1.8) BS04 XYP 3.2.1.8 GO:0005576 ... P07528 38565938
    895320 8y1m:B (1.8) BS05 CA 3.2.1.8 GO:0005576 ... P07528 38565938
    895321 8y1m:B (1.8) BS06 CA 3.2.1.8 GO:0005576 ... P07528 38565938
    895322 8y1m:B (1.8) BS07 CA 3.2.1.8 GO:0005576 ... P07528 38565938
    895323 8y1m:B (1.8) BS08 CA 3.2.1.8 GO:0005576 ... P07528 38565938
    895324 8y1m:B (1.8) BS09 CA 3.2.1.8 GO:0005576 ... P07528 38565938
    895325 8y22:A (2.792) BS01 A1LW9 N/A N/A P11362 38870833
    895326 8y22:B (2.792) BS01 A1LW9 N/A N/A P11362 38870833
    895327 8y2d:A (2.8) BS01 LDP N/A N/A Q01959 39112701
    895328 8y2e:A (3.03) BS01 CXQ N/A N/A Q01959 39112701
    895329 8y2f:A (2.97) BS01 A1D5S N/A N/A Q01959 39112701
    895330 8y2g:A (2.83) BS01 A1D5U N/A N/A Q01959 39112701
    895331 8y2h:B (3.3) BS01 peptide 1.2.1.41
    2.7.2.11    		 GO:0004349 ... P54887 38740943
    895332 8y2h:B (3.3) BS02 peptide 1.2.1.41
    2.7.2.11    		 GO:0004349 ... P54887 38740943
    895333 8y2h:B (3.3) BS03 ATP 1.2.1.41
    2.7.2.11    		 GO:0004349 ... P54887 38740943
    895334 8y2h:F (3.3) BS01 peptide 1.2.1.41
    2.7.2.11    		 GO:0004349 ... P54887 38740943
    895335 8y2h:F (3.3) BS02 peptide 1.2.1.41
    2.7.2.11    		 GO:0004349 ... P54887 38740943
    895336 8y2h:F (3.3) BS03 ATP 1.2.1.41
    2.7.2.11    		 GO:0004349 ... P54887 38740943
    895337 8y2h:G (3.3) BS01 peptide 1.2.1.41
    2.7.2.11    		 GO:0004349 ... P54887 38740943
    895338 8y2h:G (3.3) BS02 peptide 1.2.1.41
    2.7.2.11    		 GO:0004349 ... P54887 38740943
    895339 8y2h:G (3.3) BS03 ATP 1.2.1.41
    2.7.2.11    		 GO:0004349 ... P54887 38740943
    895340 8y2h:H (3.3) BS01 peptide 1.2.1.41
    2.7.2.11    		 GO:0004349 ... P54887 38740943
    895341 8y2h:H (3.3) BS02 peptide 1.2.1.41
    2.7.2.11    		 GO:0004349 ... P54887 38740943
    895342 8y2h:H (3.3) BS03 ATP 1.2.1.41
    2.7.2.11    		 GO:0004349 ... P54887 38740943
    895343 8y2s:A (2.0) BS01 A1LXW 1.14.13.2 GO:0000166 ... A0A233TK29 N/A
    895344 8y2s:A (2.0) BS02 FAD 1.14.13.2 GO:0000166 ... A0A233TK29 N/A
    895345 8y33:A (2.9) BS01 V8U N/A GO:0015979 ... N/A 38552148
    895346 8y36:1 (2.65) BS01 rna N/A GO:0005737 ... P66232 38992047
    895347 8y36:2 (2.65) BS01 rna N/A GO:0005840 ... P66254 38992047
    895348 8y36:3 (2.65) BS01 rna N/A GO:0003735 ... P66277 38992047
    895349 8y36:4 (2.65) BS01 rna N/A GO:0005737 ... P66300 38992047
    895350 8y36:C (2.65) BS01 rna N/A GO:0002181 ... P60433 38992047
    895351 8y36:D (2.65) BS01 rna N/A GO:0003735 ... P60450 38992047
    895352 8y36:E (2.65) BS01 rna N/A GO:0003735 ... P61060 38992047
    895353 8y36:F (2.65) BS01 rna N/A GO:0000049 ... Q7A083 38992047
    895354 8y36:F (2.65) BS02 rna N/A GO:0000049 ... Q7A083 38992047
    895355 8y36:G (2.65) BS01 rna N/A GO:0002181 ... Q7A084 38992047
    895356 8y36:H (2.65) BS01 rna N/A GO:0003729 ... Q7A089 38992047
    895357 8y36:I (2.65) BS01 rna N/A GO:0003735 ... Q7A081 38992047
    895358 8y36:J (2.65) BS01 rna N/A GO:0003735 ... P0A0F7 38992047
    895359 8y36:K (2.65) BS01 rna N/A GO:0000049 ... Q7A080 38992047
    895360 8y36:K (2.65) BS02 rna N/A GO:0000049 ... Q7A080 38992047
    895361 8y36:L (2.65) BS01 rna N/A GO:0003735 ... Q7A087 38992047
    895362 8y36:M (2.65) BS01 rna N/A GO:0005737 ... Q7A085 38992047
    895363 8y36:M (2.65) BS02 rna N/A GO:0005737 ... Q7A085 38992047
    895364 8y36:N (2.65) BS01 rna N/A GO:0003735 ... Q8NX05 38992047
    895365 8y36:O (2.65) BS01 rna N/A GO:0000027 ... P66109 38992047
    895366 8y36:P (2.65) BS01 rna N/A GO:0003735 ... Q7A0Q2 38992047
    895367 8y36:Q (2.65) BS01 rna N/A GO:0003735 ... Q7A079 38992047
    895368 8y36:R (2.65) BS01 rna N/A GO:0000027 ... Q7A078 38992047
    895369 8y36:S (2.65) BS01 rna N/A GO:0005840 ... P60736 38992047
    895370 8y36:T (2.65) BS01 rna N/A N/A Q7A1S4 38992047
    895371 8y36:U (2.65) BS01 rna N/A N/A P66134 38992047
    895372 8y36:U (2.65) BS02 rna N/A N/A P66134 38992047
    895373 8y36:V (2.65) BS01 rna N/A GO:0005840 ... P66154 38992047
    895374 8y36:W (2.65) BS01 rna N/A GO:0005840 ... P66174 38992047
    895375 8y36:X (2.65) BS01 rna N/A GO:0005840 ... P0A0G1 38992047
    895376 8y36:X (2.65) BS02 rna N/A GO:0005840 ... P0A0G1 38992047
    895377 8y36:Y (2.65) BS01 rna N/A N/A P66197 38992047
    895378 8y36:Z (2.65) BS01 rna N/A N/A P66211 38992047
    895379 8y37:1 (2.53) BS01 rna N/A GO:0005737 ... P66232 38992047
    895380 8y37:2 (2.53) BS01 rna N/A GO:0005840 ... P66254 38992047
    895381 8y37:3 (2.53) BS01 rna N/A GO:0003735 ... P66277 38992047
    895382 8y37:4 (2.53) BS01 rna N/A GO:0005737 ... P66300 38992047
    895383 8y37:C (2.53) BS01 rna N/A GO:0002181 ... P60433 38992047
    895384 8y37:D (2.53) BS01 rna N/A GO:0003735 ... P60450 38992047
    895385 8y37:E (2.53) BS01 rna N/A GO:0003735 ... P61060 38992047
    895386 8y37:F (2.53) BS01 rna N/A GO:0000049 ... Q7A083 38992047
    895387 8y37:F (2.53) BS02 rna N/A GO:0000049 ... Q7A083 38992047
    895388 8y37:G (2.53) BS01 rna N/A GO:0002181 ... Q7A084 38992047
    895389 8y37:H (2.53) BS01 rna N/A GO:0003729 ... Q7A089 38992047
    895390 8y37:I (2.53) BS01 rna N/A GO:0003735 ... Q7A081 38992047
    895391 8y37:J (2.53) BS01 rna N/A GO:0003735 ... P0A0F7 38992047
    895392 8y37:K (2.53) BS01 rna N/A GO:0000049 ... Q7A080 38992047
    895393 8y37:K (2.53) BS02 rna N/A GO:0000049 ... Q7A080 38992047
    895394 8y37:L (2.53) BS01 rna N/A GO:0003735 ... Q7A087 38992047
    895395 8y37:M (2.53) BS01 rna N/A GO:0005737 ... Q7A085 38992047
    895396 8y37:M (2.53) BS02 rna N/A GO:0005737 ... Q7A085 38992047
    895397 8y37:N (2.53) BS01 rna N/A GO:0003735 ... Q8NX05 38992047
    895398 8y37:O (2.53) BS01 rna N/A GO:0000027 ... P66109 38992047
    895399 8y37:P (2.53) BS01 rna N/A GO:0003735 ... Q7A0Q2 38992047
    895400 8y37:Q (2.53) BS01 rna N/A GO:0003735 ... Q7A079 38992047
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023)(download the PDF file).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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