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●TM-score ●TM-align ●US-align ●MM-align ●RNA-align ●NW-align ●LS-align ●EDTSurf ●MVP ●MVP-Fit ●SPICKER ●HAAD ●PSSpred ●3DRobot ●MR-REX ●I-TASSER-MR ●SVMSEQ ●NeBcon ●ResPRE ●TripletRes ●DeepPotential ●WDL-RF ●ATPbind ●DockRMSD ●DeepMSA ●FASPR ●EM-Refiner ●GPU-I-TASSER

●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
Download all results in tab-seperated text for 903398 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    895001 8y0u:LF (3.59) BS01 rna ? GO:0000463 ... P05737 38698775
    895002 8y0u:LF (3.59) BS02 rna ? GO:0000463 ... P05737 38698775
    895003 8y0u:LG (3.59) BS01 rna ? GO:0000470 ... P17076 38698775
    895004 8y0u:LG (3.59) BS02 rna ? GO:0000470 ... P17076 38698775
    895005 8y0u:LH (3.59) BS01 rna ? GO:0002181 ... P05738 38698775
    895006 8y0u:LI (3.59) BS01 rna ? GO:0000027 ... P41805 38698775
    895007 8y0u:LI (3.59) BS02 rna ? GO:0000027 ... P41805 38698775
    895008 8y0u:LJ (3.59) BS01 rna ? GO:0000027 ... Q3E757 38698775
    895009 8y0u:LJ (3.59) BS02 rna ? GO:0000027 ... Q3E757 38698775
    895010 8y0u:LL (3.59) BS01 rna ? GO:0002181 ... Q12690 38698775
    895011 8y0u:LM (3.59) BS01 rna ? GO:0000027 ... P36105 38698775
    895012 8y0u:LN (3.59) BS01 rna ? GO:0002181 ... P05748 38698775
    895013 8y0u:LN (3.59) BS02 rna ? GO:0002181 ... P05748 38698775
    895014 8y0u:LN (3.59) BS03 MG ? GO:0002181 ... P05748 38698775
    895015 8y0u:LO (3.59) BS01 rna ? GO:0000470 ... P26784 38698775
    895016 8y0u:LP (3.59) BS01 rna ? GO:0000448 ... P05740 38698775
    895017 8y0u:LP (3.59) BS02 rna ? GO:0000448 ... P05740 38698775
    895018 8y0u:LQ (3.59) BS01 rna ? GO:0002181 ... P0CX49 38698775
    895019 8y0u:LR (3.59) BS01 rna ? GO:0002181 ... P0CX82 38698775
    895020 8y0u:LR (3.59) BS02 rna ? GO:0002181 ... P0CX82 38698775
    895021 8y0u:LS (3.59) BS01 rna ? GO:0002181 ... P0CX23 38698775
    895022 8y0u:LS (3.59) BS02 rna ? GO:0002181 ... P0CX23 38698775
    895023 8y0u:LT (3.59) BS01 rna ? GO:0002181 ... Q02753 38698775
    895024 8y0u:LT (3.59) BS02 rna ? GO:0002181 ... Q02753 38698775
    895025 8y0u:LU (3.59) BS01 rna ? GO:0002181 ... P05749 38698775
    895026 8y0u:LV (3.59) BS01 rna ? GO:0002181 ... P0CX41 38698775
    895027 8y0u:LW (3.59) BS01 rna ? GO:0002181 ... P04449 38698775
    895028 8y0u:LX (3.59) BS01 rna ? GO:0000027 ... P04456 38698775
    895029 8y0u:LX (3.59) BS02 rna ? GO:0000027 ... P04456 38698775
    895030 8y0u:LY (3.59) BS01 rna ? GO:0002181 ... P05743 38698775
    895031 8y0u:LY (3.59) BS02 rna ? GO:0002181 ... P05743 38698775
    895032 8y0u:LZ (3.59) BS01 rna ? GO:0002181 ... P0C2H6 38698775
    895033 8y0u:La (3.59) BS01 rna ? GO:0002181 ... P02406 38698775
    895034 8y0u:Lb (3.59) BS01 rna ? GO:0002181 ... P05747 38698775
    895035 8y0u:Lc (3.59) BS01 rna ? GO:0002181 ... P14120 38698775
    895036 8y0u:Ld (3.59) BS01 rna ? GO:0002181 ... P0C2H8 38698775
    895037 8y0u:Le (3.59) BS01 rna ? GO:0002181 ... P38061 38698775
    895038 8y0u:Le (3.59) BS02 MG ? GO:0002181 ... P38061 38698775
    895039 8y0u:Lf (3.59) BS01 rna ? GO:0000027 ... P05744 38698775
    895040 8y0u:Lg (3.59) BS01 rna ? GO:0002181 ... P87262 38698775
    895041 8y0u:Lg (3.59) BS02 ZN ? GO:0002181 ... P87262 38698775
    895042 8y0u:Lh (3.59) BS01 rna ? GO:0000463 ... P0CX84 38698775
    895043 8y0u:Lh (3.59) BS02 rna ? GO:0000463 ... P0CX84 38698775
    895044 8y0u:Li (3.59) BS01 rna ? GO:0002181 ... P05745 38698775
    895045 8y0u:Lj (3.59) BS01 rna ? GO:0000448 ... P49166 38698775
    895046 8y0u:Lj (3.59) BS02 rna ? GO:0000448 ... P49166 38698775
    895047 8y0u:Lj (3.59) BS03 ZN ? GO:0000448 ... P49166 38698775
    895048 8y0u:Lk (3.59) BS01 rna ? GO:0002181 ... P49167 38698775
    895049 8y0u:Ll (3.59) BS01 rna ? GO:0002181 ... P04650 38698775
    895050 8y0u:Ll (3.59) BS02 rna ? GO:0002181 ... P04650 38698775
    895051 8y0u:Lm (3.59) BS01 rna ? GO:0000027 ... P0CH08 38698775
    895052 8y0u:Lm (3.59) BS02 ZN ? GO:0000027 ... P0CH08 38698775
    895053 8y0u:Lo (3.59) BS01 rna ? GO:0002181 ... P0CX27 38698775
    895054 8y0u:Lo (3.59) BS02 ZN ? GO:0002181 ... P0CX27 38698775
    895055 8y0u:Lp (3.59) BS01 rna ? GO:0002181 ... P0CX25 38698775
    895056 8y0u:Lp (3.59) BS02 ZN ? GO:0002181 ... P0CX25 38698775
    895057 8y0u:P0 (3.59) BS01 rna ? GO:0000027 ... P05317 38698775
    895058 8y0u:P2 (3.59) BS01 rna ? GO:0000027 ... P0CX53 38698775
    895059 8y0u:SA (3.59) BS01 rna ? GO:0000028 ... P32905 38698775
    895060 8y0u:SB (3.59) BS01 rna ? GO:0000462 ... P33442 38698775
    895061 8y0u:SB (3.59) BS02 rna ? GO:0000462 ... P33442 38698775
    895062 8y0u:SC (3.59) BS01 rna ? GO:0000054 ... P25443 38698775
    895063 8y0u:SE (3.59) BS01 rna ? GO:0002181 ... P0CX35 38698775
    895064 8y0u:SE (3.59) BS02 MG ? GO:0002181 ... P0CX35 38698775
    895065 8y0u:SG (3.59) BS01 rna ? GO:0000462 ... P0CX37 38698775
    895066 8y0u:SH (3.59) BS01 rna ? GO:0002181 ... P26786 38698775
    895067 8y0u:SI (3.59) BS01 rna ? GO:0000462 ... P0CX39 38698775
    895068 8y0u:SI (3.59) BS02 rna ? GO:0000462 ... P0CX39 38698775
    895069 8y0u:SJ (3.59) BS01 rna ? GO:0000462 ... O13516 38698775
    895070 8y0u:SL (3.59) BS01 rna ? GO:0000028 ... P0CX47 38698775
    895071 8y0u:SN (3.59) BS01 rna ? GO:0000462 ... P05756 38698775
    895072 8y0u:SN (3.59) BS02 rna ? GO:0000462 ... P05756 38698775
    895073 8y0u:SO (3.59) BS01 rna ? GO:0000028 ... P39516 38698775
    895074 8y0u:SP (3.59) BS01 rna ? GO:0000028 ... Q01855 38698775
    895075 8y0u:SQ (3.59) BS01 rna ? GO:0000462 ... P0CX51 38698775
    895076 8y0u:SQ (3.59) BS02 MG ? GO:0000462 ... P0CX51 38698775
    895077 8y0u:ST (3.59) BS01 rna ? GO:0000028 ... P07280 38698775
    895078 8y0u:ST (3.59) BS02 MG ? GO:0000028 ... P07280 38698775
    895079 8y0u:ST (3.59) BS03 MG ? GO:0000028 ... P07280 38698775
    895080 8y0u:SU (3.59) BS01 rna ? GO:0000462 ... P38701 38698775
    895081 8y0u:SW (3.59) BS01 rna ? GO:0002181 ... P0C0W1 38698775
    895082 8y0u:SX (3.59) BS01 rna ? GO:0000462 ... P0CX29 38698775
    895083 8y0u:SY (3.59) BS01 rna ? GO:0000462 ... P0CX31 38698775
    895084 8y0u:SZ (3.59) BS01 rna ? GO:0002181 ... Q3E792 38698775
    895085 8y0u:Sa (3.59) BS01 rna ? GO:0000054 ... P39939 38698775
    895086 8y0u:Sb (3.59) BS01 rna ? GO:0000028 ... P35997 38698775
    895087 8y0u:Sc (3.59) BS01 rna ? GO:0000028 ... Q3E7X9 38698775
    895088 8y0u:Sd (3.59) BS01 rna ? GO:0002181 ... P41057 38698775
    895089 8y0u:Sd (3.59) BS02 MG ? GO:0002181 ... P41057 38698775
    895090 8y0u:Sd (3.59) BS03 ZN ? GO:0002181 ... P41057 38698775
    895091 8y0u:Se (3.59) BS01 rna ? GO:0002181 ... P0CX33 38698775
    895092 8y0u:Sf (3.59) BS01 rna ? GO:0000028 ... P05759 38698775
    895093 8y0u:Sf (3.59) BS02 ZN ? GO:0000028 ... P05759 38698775
    895094 8y0u:s (3.59) BS01 rna ? GO:0000723 ... P39015 38698775
    895095 8y0w:5 (3.4) BS01 rna ? GO:0003723 ... P63241 38698775
    895096 8y0w:CB (3.4) BS01 rna 3.6.5.- GO:0002244 ... P13639 38698775
    895097 8y0w:CB (3.4) BS02 rna 3.6.5.- GO:0002244 ... P13639 38698775
    895098 8y0w:LA (3.4) BS01 rna ? GO:0002181 ... P62917 38698775
    895099 8y0w:LA (3.4) BS02 MG ? GO:0002181 ... P62917 38698775
    895100 8y0w:LB (3.4) BS01 rna ? GO:0002181 ... P39023 38698775
    895101 8y0w:LC (3.4) BS01 rna ? GO:0002181 ... P36578 38698775
    895102 8y0w:LC (3.4) BS02 rna ? GO:0002181 ... P36578 38698775
    895103 8y0w:LD (3.4) BS01 rna ? GO:0000027 ... P46777 38698775
    895104 8y0w:LD (3.4) BS02 rna ? GO:0000027 ... P46777 38698775
    895105 8y0w:LE (3.4) BS01 rna ? GO:0000027 ... Q02878 38698775
    895106 8y0w:LF (3.4) BS01 rna ? GO:0000463 ... P18124 38698775
    895107 8y0w:LF (3.4) BS02 rna ? GO:0000463 ... P18124 38698775
    895108 8y0w:LG (3.4) BS01 rna ? GO:0000470 ... P62424 38698775
    895109 8y0w:LG (3.4) BS02 rna ? GO:0000470 ... P62424 38698775
    895110 8y0w:LH (3.4) BS01 rna ? GO:0002181 ... P32969 38698775
    895111 8y0w:LI (3.4) BS01 rna ? GO:0000027 ... Q96L21 38698775
    895112 8y0w:LI (3.4) BS02 rna ? GO:0000027 ... Q96L21 38698775
    895113 8y0w:LJ (3.4) BS01 rna ? GO:0000027 ... P62913 38698775
    895114 8y0w:LJ (3.4) BS02 rna ? GO:0000027 ... P62913 38698775
    895115 8y0w:LL (3.4) BS01 rna ? GO:0001824 ... P26373 38698775
    895116 8y0w:LL (3.4) BS02 rna ? GO:0001824 ... P26373 38698775
    895117 8y0w:LM (3.4) BS01 rna ? GO:0002181 ... P50914 38698775
    895118 8y0w:LN (3.4) BS01 rna ? GO:0002181 ... P61313 38698775
    895119 8y0w:LN (3.4) BS02 rna ? GO:0002181 ... P61313 38698775
    895120 8y0w:LO (3.4) BS01 rna ? GO:0002181 ... P40429 38698775
    895121 8y0w:LP (3.4) BS01 rna ? GO:0002181 ... P18621 38698775
    895122 8y0w:LP (3.4) BS02 rna ? GO:0002181 ... P18621 38698775
    895123 8y0w:LQ (3.4) BS01 rna ? GO:0002181 ... Q07020 38698775
    895124 8y0w:LR (3.4) BS01 rna ? GO:0002181 ... P84098 38698775
    895125 8y0w:LR (3.4) BS02 rna ? GO:0002181 ... P84098 38698775
    895126 8y0w:LS (3.4) BS01 rna ? GO:0002181 ... Q02543 38698775
    895127 8y0w:LS (3.4) BS02 rna ? GO:0002181 ... Q02543 38698775
    895128 8y0w:LT (3.4) BS01 rna ? GO:0002181 ... P46778 38698775
    895129 8y0w:LT (3.4) BS02 rna ? GO:0002181 ... P46778 38698775
    895130 8y0w:LU (3.4) BS01 rna ? GO:0002181 ... P35268 38698775
    895131 8y0w:LV (3.4) BS01 rna ? GO:0000122 ... P62829 38698775
    895132 8y0w:LW (3.4) BS01 rna ? GO:0000027 ... P83731 38698775
    895133 8y0w:LX (3.4) BS01 rna ? GO:0000027 ... P62750 38698775
    895134 8y0w:LX (3.4) BS02 rna ? GO:0000027 ... P62750 38698775
    895135 8y0w:LY (3.4) BS01 rna ? GO:0002181 ... P61254 38698775
    895136 8y0w:LY (3.4) BS02 rna ? GO:0002181 ... P61254 38698775
    895137 8y0w:LZ (3.4) BS01 rna ? GO:0002181 ... P61353 38698775
    895138 8y0w:La (3.4) BS01 rna ? GO:0002181 ... P46776 38698775
    895139 8y0w:Lb (3.4) BS01 rna ? GO:0002181 ... P47914 38698775
    895140 8y0w:Lc (3.4) BS01 rna ? GO:0002181 ... P62888 38698775
    895141 8y0w:Ld (3.4) BS01 rna ? GO:0002181 ... P62899 38698775
    895142 8y0w:Le (3.4) BS01 rna ? GO:0002181 ... P62910 38698775
    895143 8y0w:Le (3.4) BS02 MG ? GO:0002181 ... P62910 38698775
    895144 8y0w:Lf (3.4) BS01 rna ? GO:0000049 ... P18077 38698775
    895145 8y0w:Lg (3.4) BS01 rna ? GO:0002181 ... P49207 38698775
    895146 8y0w:Lg (3.4) BS02 MG ? GO:0002181 ... P49207 38698775
    895147 8y0w:Lg (3.4) BS03 ZN ? GO:0002181 ... P49207 38698775
    895148 8y0w:Lh (3.4) BS01 rna ? GO:0000463 ... P42766 38698775
    895149 8y0w:Lh (3.4) BS02 rna ? GO:0000463 ... P42766 38698775
    895150 8y0w:Li (3.4) BS01 rna ? GO:0002181 ... Q9Y3U8 38698775
    895151 8y0w:Lj (3.4) BS01 rna ? GO:0002181 ... P61927 38698775
    895152 8y0w:Lj (3.4) BS02 rna ? GO:0002181 ... P61927 38698775
    895153 8y0w:Lj (3.4) BS03 ZN ? GO:0002181 ... P61927 38698775
    895154 8y0w:Lk (3.4) BS01 rna ? GO:0001501 ... P63173 38698775
    895155 8y0w:Ll (3.4) BS01 rna ? GO:0002181 ... P62891 38698775
    895156 8y0w:Ll (3.4) BS02 rna ? GO:0002181 ... P62891 38698775
    895157 8y0w:Lm (3.4) BS01 rna ? GO:0002181 ... P62987 38698775
    895158 8y0w:Lm (3.4) BS02 ZN ? GO:0002181 ... P62987 38698775
    895159 8y0w:Lo (3.4) BS01 rna ? GO:0002181 ... P83881 38698775
    895160 8y0w:Lo (3.4) BS02 ZN ? GO:0002181 ... P83881 38698775
    895161 8y0w:Lp (3.4) BS01 rna ? GO:0002181 ... P61513 38698775
    895162 8y0w:Lp (3.4) BS02 ZN ? GO:0002181 ... P61513 38698775
    895163 8y0w:Lr (3.4) BS01 rna ? GO:0002181 ... P46779 38698775
    895164 8y0w:S (3.4) BS01 rna ? GO:0003723 ... Q8NC51 38698775
    895165 8y0w:SA (3.4) BS01 rna ? GO:0000028 ... P08865 38698775
    895166 8y0w:SB (3.4) BS01 rna ? GO:0002181 ... P61247 38698775
    895167 8y0w:SC (3.4) BS01 rna ? GO:0002181 ... P15880 38698775
    895168 8y0w:SD (3.4) BS01 rna 4.2.99.18 GO:0000977 ... P23396 38698775
    895169 8y0w:SE (3.4) BS01 rna ? GO:0002181 ... P62701 38698775
    895170 8y0w:SF (3.4) BS01 rna ? GO:0000028 ... P46782 38698775
    895171 8y0w:SG (3.4) BS01 rna ? GO:0000082 ... P62753 38698775
    895172 8y0w:SH (3.4) BS01 rna ? GO:0001843 ... P62081 38698775
    895173 8y0w:SI (3.4) BS01 rna ? GO:0000462 ... P62241 38698775
    895174 8y0w:SI (3.4) BS02 rna ? GO:0000462 ... P62241 38698775
    895175 8y0w:SJ (3.4) BS01 rna ? GO:0002181 ... P46781 38698775
    895176 8y0w:SK (3.4) BS01 rna ? GO:0002181 ... P46783 38698775
    895177 8y0w:SL (3.4) BS01 rna ? GO:0002181 ... P62280 38698775
    895178 8y0w:SN (3.4) BS01 rna ? GO:0002181 ... P62277 38698775
    895179 8y0w:SO (3.4) BS01 rna ? GO:0000028 ... P62263 38698775
    895180 8y0w:SP (3.4) BS01 rna ? GO:0000028 ... P62841 38698775
    895181 8y0w:SQ (3.4) BS01 rna ? GO:0000462 ... P62249 38698775
    895182 8y0w:SR (3.4) BS01 rna ? GO:0002181 ... P08708 38698775
    895183 8y0w:SS (3.4) BS01 rna ? GO:0002181 ... P62269 38698775
    895184 8y0w:ST (3.4) BS01 rna ? GO:0000028 ... P39019 38698775
    895185 8y0w:SU (3.4) BS01 rna ? GO:0002181 ... P60866 38698775
    895186 8y0w:SW (3.4) BS01 rna ? GO:0002181 ... P62244 38698775
    895187 8y0w:SX (3.4) BS01 rna ? GO:0002181 ... P62266 38698775
    895188 8y0w:SY (3.4) BS01 rna ? GO:0002181 ... P62847 38698775
    895189 8y0w:SZ (3.4) BS01 rna ? GO:0002181 ... P62851 38698775
    895190 8y0w:Sa (3.4) BS01 rna ? GO:0002181 ... P62854 38698775
    895191 8y0w:Sb (3.4) BS01 rna ? GO:0000028 ... P42677 38698775
    895192 8y0w:Sc (3.4) BS01 rna ? GO:0000028 ... P62857 38698775
    895193 8y0w:Sd (3.4) BS01 rna ? GO:0002181 ... P62273 38698775
    895194 8y0w:Se (3.4) BS01 rna ? GO:0003735 ... P62861 38698775
    895195 8y0w:Sg (3.4) BS01 rna ? GO:0001891 ... P63244 38698775
    895196 8y0x:CB (3.3) BS01 rna 3.6.5.- GO:0002244 ... P13639 38698775
    895197 8y0x:CB (3.3) BS02 rna 3.6.5.- GO:0002244 ... P13639 38698775
    895198 8y0x:LA (3.3) BS01 rna ? GO:0002181 ... P62917 38698775
    895199 8y0x:LA (3.3) BS02 MG ? GO:0002181 ... P62917 38698775
    895200 8y0x:LB (3.3) BS01 rna ? GO:0002181 ... P39023 38698775
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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