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●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
Download all results in tab-seperated text for 903398 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    894401 8xt0:Sc (3.2) BS01 rna N/A GO:0000049 ... Q92552 38942792
    894402 8xt0:Se (3.2) BS01 rna N/A GO:0003723 ... P51398 38942792
    894403 8xt0:Se (3.2) BS02 GDP N/A GO:0003723 ... P51398 38942792
    894404 8xt0:Sf (3.2) BS01 rna N/A GO:0003723 ... Q9NP92 38942792
    894405 8xt0:Si (3.2) BS01 rna N/A GO:0003735 ... Q9Y291 38942792
    894406 8xt0:Sj (3.2) BS01 rna N/A GO:0003735 ... P82930 38942792
    894407 8xt0:Sk (3.2) BS01 rna N/A GO:0003723 ... P82673 38942792
    894408 8xt0:Sm (3.2) BS01 rna N/A GO:0001650 ... Q96BP2 38942792
    894409 8xt0:Sn (3.2) BS01 rna N/A GO:0005515 ... Q9NWT8 38942792
    894410 8xt0:Sn (3.2) BS02 rna N/A GO:0005515 ... Q9NWT8 38942792
    894411 8xt1:L3 (3.1) BS01 rna N/A GO:0005515 ... Q96EL3 38942792
    894412 8xt1:L4 (3.1) BS01 rna N/A GO:0003723 ... Q6P161 38942792
    894413 8xt1:L6 (3.1) BS01 rna N/A GO:0003735 ... Q9BQC6 38942792
    894414 8xt1:L8 (3.1) BS01 rna N/A GO:0005515 ... Q8TAE8 38942792
    894415 8xt1:LB (3.1) BS01 rna N/A GO:0003723 ... Q5T653 38942792
    894416 8xt1:LC (3.1) BS01 rna N/A GO:0003723 ... P09001 38942792
    894417 8xt1:LD (3.1) BS01 rna N/A GO:0003723 ... Q9BYD3 38942792
    894418 8xt1:LI (3.1) BS01 rna N/A GO:0003723 ... Q9BYD2 38942792
    894419 8xt1:LJ (3.1) BS01 rna N/A GO:0003723 ... Q7Z7H8 38942792
    894420 8xt1:LK (3.1) BS01 rna N/A GO:0003723 ... Q9Y3B7 38942792
    894421 8xt1:LM (3.1) BS01 rna N/A GO:0003723 ... Q9BYD1 38942792
    894422 8xt1:LN (3.1) BS01 rna N/A GO:0003723 ... Q6P1L8 38942792
    894423 8xt1:LO (3.1) BS01 rna N/A GO:0003723 ... Q9P015 38942792
    894424 8xt1:LP (3.1) BS01 rna N/A GO:0003735 ... Q9NX20 38942792
    894425 8xt1:LQ (3.1) BS01 rna N/A GO:0003735 ... Q9NRX2 38942792
    894426 8xt1:LR (3.1) BS01 rna N/A GO:0005737 ... A8K9D2 38942792
    894427 8xt1:LR (3.1) BS02 rna N/A GO:0005737 ... A8K9D2 38942792
    894428 8xt1:LS (3.1) BS01 rna N/A GO:0003735 ... P49406 38942792
    894429 8xt1:LT (3.1) BS01 rna N/A GO:0003723 ... Q9BYC9 38942792
    894430 8xt1:LU (3.1) BS01 rna N/A GO:0003723 ... Q7Z2W9 38942792
    894431 8xt1:LV (3.1) BS01 rna N/A GO:0005739 ... E7ESL0 38942792
    894432 8xt1:LW (3.1) BS01 rna N/A GO:0001650 ... Q16540 38942792
    894433 8xt1:LX (3.1) BS01 rna N/A GO:0005739 ... Q96A35 38942792
    894434 8xt1:La (3.1) BS01 rna N/A GO:0003723 ... Q9P0M9 38942792
    894435 8xt1:Lb (3.1) BS01 rna N/A GO:0003723 ... Q13084 38942792
    894436 8xt1:Ld (3.1) BS01 rna N/A GO:0005739 ... Q8TCC3 38942792
    894437 8xt1:Lf (3.1) BS01 rna N/A GO:0003723 ... Q9BYC8 38942792
    894438 8xt1:Lf (3.1) BS02 ZN N/A GO:0003723 ... Q9BYC8 38942792
    894439 8xt1:Lg (3.1) BS01 rna N/A GO:0005739 ... O75394 38942792
    894440 8xt1:Lh (3.1) BS01 rna N/A GO:0003735 ... Q9BQ48 38942792
    894441 8xt1:Li (3.1) BS01 rna N/A GO:0003735 ... Q9NZE8 38942792
    894442 8xt1:Lj (3.1) BS01 rna N/A GO:0005515 ... Q9P0J6 38942792
    894443 8xt1:Lj (3.1) BS02 ZN N/A GO:0005515 ... Q9P0J6 38942792
    894444 8xt1:Lk (3.1) BS01 rna N/A GO:0003723 ... Q9BZE1 38942792
    894445 8xt1:Ll (3.1) BS01 rna N/A GO:0005515 ... Q96DV4 38942792
    894446 8xt1:Ll (3.1) BS02 rna N/A GO:0005515 ... Q96DV4 38942792
    894447 8xt1:Ln (3.1) BS01 rna N/A GO:0003723 ... Q9NQ50 38942792
    894448 8xt1:Lo (3.1) BS01 rna N/A GO:0003723 ... Q8IXM3 38942792
    894449 8xt1:Lp (3.1) BS01 rna N/A GO:0003723 ... Q9Y6G3 38942792
    894450 8xt1:Lq (3.1) BS01 rna N/A GO:0003723 ... Q8N983 38942792
    894451 8xt1:Lr (3.1) BS01 rna N/A GO:0003723 ... Q9H9J2 38942792
    894452 8xt1:Lu (3.1) BS01 rna N/A GO:0003674 ... Q9HD33 38942792
    894453 8xt1:Lv (3.1) BS01 rna N/A GO:0005515 ... Q96GC5 38942792
    894454 8xt1:Lv (3.1) BS02 rna N/A GO:0005515 ... Q96GC5 38942792
    894455 8xt1:Lw (3.1) BS01 rna N/A GO:0003735 ... Q13405 38942792
    894456 8xt1:Ly (3.1) BS01 rna N/A GO:0003735 ... Q4U2R6 38942792
    894457 8xt1:Lz (3.1) BS01 rna N/A N/A A8K7J6 38942792
    894458 8xt1:SR (3.1) BS01 rna N/A GO:0003735 ... Q9NVS2 38942792
    894459 8xt1:Sf (3.1) BS01 rna N/A GO:0003723 ... Q9NP92 38942792
    894460 8xt2:L4 (3.3) BS01 rna N/A GO:0003723 ... Q6P161 38942792
    894461 8xt2:L6 (3.3) BS01 rna N/A GO:0003735 ... Q9BQC6 38942792
    894462 8xt2:L8 (3.3) BS01 rna N/A GO:0005515 ... Q8TAE8 38942792
    894463 8xt2:LB (3.3) BS01 rna N/A GO:0003723 ... Q5T653 38942792
    894464 8xt2:LB (3.3) BS02 MG N/A GO:0003723 ... Q5T653 38942792
    894465 8xt2:LC (3.3) BS01 rna N/A GO:0003723 ... P09001 38942792
    894466 8xt2:LD (3.3) BS01 rna N/A GO:0003723 ... Q9BYD3 38942792
    894467 8xt2:LI (3.3) BS01 rna N/A GO:0003723 ... Q9BYD2 38942792
    894468 8xt2:LJ (3.3) BS01 rna N/A GO:0003723 ... Q7Z7H8 38942792
    894469 8xt2:LK (3.3) BS01 rna N/A GO:0003723 ... Q9Y3B7 38942792
    894470 8xt2:LM (3.3) BS01 rna N/A GO:0003723 ... Q9BYD1 38942792
    894471 8xt2:LN (3.3) BS01 rna N/A GO:0003723 ... Q6P1L8 38942792
    894472 8xt2:LO (3.3) BS01 rna N/A GO:0003723 ... Q9P015 38942792
    894473 8xt2:LP (3.3) BS01 rna N/A GO:0003735 ... Q9NX20 38942792
    894474 8xt2:LQ (3.3) BS01 rna N/A GO:0003735 ... Q9NRX2 38942792
    894475 8xt2:LR (3.3) BS01 rna N/A GO:0005737 ... A8K9D2 38942792
    894476 8xt2:LR (3.3) BS02 rna N/A GO:0005737 ... A8K9D2 38942792
    894477 8xt2:LS (3.3) BS01 rna N/A GO:0003735 ... P49406 38942792
    894478 8xt2:LT (3.3) BS01 rna N/A GO:0003723 ... Q9BYC9 38942792
    894479 8xt2:LU (3.3) BS01 rna N/A GO:0003723 ... Q7Z2W9 38942792
    894480 8xt2:LV (3.3) BS01 rna N/A GO:0005739 ... E7ESL0 38942792
    894481 8xt2:LW (3.3) BS01 rna N/A GO:0001650 ... Q16540 38942792
    894482 8xt2:LX (3.3) BS01 rna N/A GO:0005739 ... Q96A35 38942792
    894483 8xt2:La (3.3) BS01 rna N/A GO:0003723 ... Q9P0M9 38942792
    894484 8xt2:Lb (3.3) BS01 rna N/A GO:0003723 ... Q13084 38942792
    894485 8xt2:Ld (3.3) BS01 rna N/A GO:0005739 ... Q8TCC3 38942792
    894486 8xt2:Lf (3.3) BS01 rna N/A GO:0003723 ... Q9BYC8 38942792
    894487 8xt2:Lf (3.3) BS02 ZN N/A GO:0003723 ... Q9BYC8 38942792
    894488 8xt2:Lg (3.3) BS01 rna N/A GO:0005739 ... O75394 38942792
    894489 8xt2:Lh (3.3) BS01 rna N/A GO:0003735 ... Q9BQ48 38942792
    894490 8xt2:Li (3.3) BS01 rna N/A GO:0003735 ... Q9NZE8 38942792
    894491 8xt2:Lj (3.3) BS01 rna N/A GO:0005515 ... Q9P0J6 38942792
    894492 8xt2:Lj (3.3) BS02 ZN N/A GO:0005515 ... Q9P0J6 38942792
    894493 8xt2:Lk (3.3) BS01 rna N/A GO:0003723 ... Q9BZE1 38942792
    894494 8xt2:Ll (3.3) BS01 rna N/A GO:0005515 ... Q96DV4 38942792
    894495 8xt2:Ll (3.3) BS02 rna N/A GO:0005515 ... Q96DV4 38942792
    894496 8xt2:Ln (3.3) BS01 rna N/A GO:0003723 ... Q9NQ50 38942792
    894497 8xt2:Lo (3.3) BS01 rna N/A GO:0003723 ... Q8IXM3 38942792
    894498 8xt2:Lp (3.3) BS01 rna N/A GO:0003723 ... Q9Y6G3 38942792
    894499 8xt2:Lq (3.3) BS01 rna N/A GO:0003723 ... Q8N983 38942792
    894500 8xt2:Lr (3.3) BS01 rna N/A GO:0003723 ... Q9H9J2 38942792
    894501 8xt2:Lu (3.3) BS01 rna N/A GO:0003674 ... Q9HD33 38942792
    894502 8xt2:Lv (3.3) BS01 rna N/A GO:0005515 ... Q96GC5 38942792
    894503 8xt2:Lv (3.3) BS02 rna N/A GO:0005515 ... Q96GC5 38942792
    894504 8xt2:Lw (3.3) BS01 rna N/A GO:0003735 ... Q13405 38942792
    894505 8xt2:Ly (3.3) BS01 rna N/A GO:0003735 ... Q4U2R6 38942792
    894506 8xt2:Lz (3.3) BS01 rna N/A N/A A8K7J6 38942792
    894507 8xt2:SB (3.3) BS01 rna N/A GO:0003735 ... Q9Y399 38942792
    894508 8xt2:SB (3.3) BS02 ZN N/A GO:0003735 ... Q9Y399 38942792
    894509 8xt2:SE (3.3) BS01 rna N/A GO:0003723 ... P82675 38942792
    894510 8xt2:SF (3.3) BS01 rna N/A GO:0003735 ... P82932 38942792
    894511 8xt2:SG (3.3) BS01 rna N/A GO:0000028 ... Q9Y2R9 38942792
    894512 8xt2:SI (3.3) BS01 rna N/A GO:0003723 ... P82933 38942792
    894513 8xt2:SJ (3.3) BS01 rna N/A GO:0003674 ... P82664 38942792
    894514 8xt2:SK (3.3) BS01 rna N/A GO:0003723 ... P82912 38942792
    894515 8xt2:SL (3.3) BS01 rna N/A GO:0003723 ... O15235 38942792
    894516 8xt2:SN (3.3) BS01 rna N/A GO:0003723 ... O60783 38942792
    894517 8xt2:SO (3.3) BS01 rna N/A GO:0003723 ... P82914 38942792
    894518 8xt2:SP (3.3) BS01 rna N/A GO:0003735 ... Q9Y3D3 38942792
    894519 8xt2:SQ (3.3) BS01 rna N/A GO:0003735 ... Q9Y2R5 38942792
    894520 8xt2:SR (3.3) BS01 rna N/A GO:0003735 ... Q9NVS2 38942792
    894521 8xt2:SS (3.3) BS01 rna N/A GO:0003735 ... Q9Y676 38942792
    894522 8xt2:SS (3.3) BS02 ZN N/A GO:0003735 ... Q9Y676 38942792
    894523 8xt2:ST (3.3) BS01 rna N/A GO:0003735 ... Q9Y3D5 38942792
    894524 8xt2:ST (3.3) BS02 ZN N/A GO:0003735 ... Q9Y3D5 38942792
    894525 8xt2:SW (3.3) BS01 rna N/A GO:0003723 ... P82921 38942792
    894526 8xt2:SY (3.3) BS01 rna N/A GO:0003723 ... Q9Y3D9 38942792
    894527 8xt2:SZ (3.3) BS01 rna N/A GO:0003723 ... Q96EL2 38942792
    894528 8xt2:Sa (3.3) BS01 rna N/A GO:0003735 ... P82663 38942792
    894529 8xt2:Sa (3.3) BS02 ZN N/A GO:0003735 ... P82663 38942792
    894530 8xt2:Sb (3.3) BS01 rna N/A GO:0003723 ... Q9BYN8 38942792
    894531 8xt2:Sc (3.3) BS01 rna N/A GO:0000049 ... Q92552 38942792
    894532 8xt2:Se (3.3) BS01 rna N/A GO:0003723 ... P51398 38942792
    894533 8xt2:Se (3.3) BS02 GDP N/A GO:0003723 ... P51398 38942792
    894534 8xt2:Sf (3.3) BS01 rna N/A GO:0003723 ... Q9NP92 38942792
    894535 8xt2:Si (3.3) BS01 rna N/A GO:0003735 ... Q9Y291 38942792
    894536 8xt2:Sj (3.3) BS01 rna N/A GO:0003735 ... P82930 38942792
    894537 8xt2:Sk (3.3) BS01 rna N/A GO:0003723 ... P82673 38942792
    894538 8xt2:Sm (3.3) BS01 rna N/A GO:0001650 ... Q96BP2 38942792
    894539 8xt2:Sn (3.3) BS01 rna N/A GO:0005515 ... Q9NWT8 38942792
    894540 8xt2:Sn (3.3) BS02 rna N/A GO:0005515 ... Q9NWT8 38942792
    894541 8xt3:L4 (3.1) BS01 rna N/A GO:0003723 ... Q6P161 38942792
    894542 8xt3:L6 (3.1) BS01 rna N/A GO:0003735 ... Q9BQC6 38942792
    894543 8xt3:L8 (3.1) BS01 rna N/A GO:0005515 ... Q8TAE8 38942792
    894544 8xt3:LB (3.1) BS01 rna N/A GO:0003723 ... Q5T653 38942792
    894545 8xt3:LC (3.1) BS01 rna N/A GO:0003723 ... P09001 38942792
    894546 8xt3:LD (3.1) BS01 rna N/A GO:0003723 ... Q9BYD3 38942792
    894547 8xt3:LI (3.1) BS01 rna N/A GO:0003723 ... Q9BYD2 38942792
    894548 8xt3:LJ (3.1) BS01 rna N/A GO:0003723 ... Q7Z7H8 38942792
    894549 8xt3:LK (3.1) BS01 rna N/A GO:0003723 ... Q9Y3B7 38942792
    894550 8xt3:LM (3.1) BS01 rna N/A GO:0003723 ... Q9BYD1 38942792
    894551 8xt3:LN (3.1) BS01 rna N/A GO:0003723 ... Q6P1L8 38942792
    894552 8xt3:LO (3.1) BS01 rna N/A GO:0003723 ... Q9P015 38942792
    894553 8xt3:LP (3.1) BS01 rna N/A GO:0003735 ... Q9NX20 38942792
    894554 8xt3:LQ (3.1) BS01 rna N/A GO:0003735 ... Q9NRX2 38942792
    894555 8xt3:LR (3.1) BS01 rna N/A GO:0005737 ... A8K9D2 38942792
    894556 8xt3:LR (3.1) BS02 rna N/A GO:0005737 ... A8K9D2 38942792
    894557 8xt3:LS (3.1) BS01 rna N/A GO:0003735 ... P49406 38942792
    894558 8xt3:LT (3.1) BS01 rna N/A GO:0003723 ... Q9BYC9 38942792
    894559 8xt3:LU (3.1) BS01 rna N/A GO:0003723 ... Q7Z2W9 38942792
    894560 8xt3:LV (3.1) BS01 rna N/A GO:0005739 ... E7ESL0 38942792
    894561 8xt3:LW (3.1) BS01 rna N/A GO:0001650 ... Q16540 38942792
    894562 8xt3:LX (3.1) BS01 rna N/A GO:0005739 ... Q96A35 38942792
    894563 8xt3:La (3.1) BS01 rna N/A GO:0003723 ... Q9P0M9 38942792
    894564 8xt3:Lb (3.1) BS01 rna N/A GO:0003723 ... Q13084 38942792
    894565 8xt3:Ld (3.1) BS01 rna N/A GO:0005739 ... Q8TCC3 38942792
    894566 8xt3:Lf (3.1) BS01 rna N/A GO:0003723 ... Q9BYC8 38942792
    894567 8xt3:Lf (3.1) BS02 ZN N/A GO:0003723 ... Q9BYC8 38942792
    894568 8xt3:Lg (3.1) BS01 rna N/A GO:0005739 ... O75394 38942792
    894569 8xt3:Lh (3.1) BS01 rna N/A GO:0003735 ... Q9BQ48 38942792
    894570 8xt3:Li (3.1) BS01 rna N/A GO:0003735 ... Q9NZE8 38942792
    894571 8xt3:Lj (3.1) BS01 rna N/A GO:0005515 ... Q9P0J6 38942792
    894572 8xt3:Lj (3.1) BS02 ZN N/A GO:0005515 ... Q9P0J6 38942792
    894573 8xt3:Lk (3.1) BS01 rna N/A GO:0003723 ... Q9BZE1 38942792
    894574 8xt3:Ll (3.1) BS01 rna N/A GO:0005515 ... Q96DV4 38942792
    894575 8xt3:Ll (3.1) BS02 rna N/A GO:0005515 ... Q96DV4 38942792
    894576 8xt3:Ln (3.1) BS01 rna N/A GO:0003723 ... Q9NQ50 38942792
    894577 8xt3:Lo (3.1) BS01 rna N/A GO:0003723 ... Q8IXM3 38942792
    894578 8xt3:Lp (3.1) BS01 rna N/A GO:0003723 ... Q9Y6G3 38942792
    894579 8xt3:Lq (3.1) BS01 rna N/A GO:0003723 ... Q8N983 38942792
    894580 8xt3:Lr (3.1) BS01 rna N/A GO:0003723 ... Q9H9J2 38942792
    894581 8xt3:Lu (3.1) BS01 rna N/A GO:0003674 ... Q9HD33 38942792
    894582 8xt3:Lv (3.1) BS01 rna N/A GO:0005515 ... Q96GC5 38942792
    894583 8xt3:Lv (3.1) BS02 rna N/A GO:0005515 ... Q96GC5 38942792
    894584 8xt3:Lw (3.1) BS01 rna N/A GO:0003735 ... Q13405 38942792
    894585 8xt3:Ly (3.1) BS01 rna N/A GO:0003735 ... Q4U2R6 38942792
    894586 8xt3:Lz (3.1) BS01 rna N/A N/A A8K7J6 38942792
    894587 8xt3:SR (3.1) BS01 rna N/A GO:0003735 ... Q9NVS2 38942792
    894588 8xt3:Sf (3.1) BS01 rna N/A GO:0003723 ... Q9NP92 38942792
    894589 8xte:A (1.99) BS01 SAH N/A N/A A0A0B5L781 39150221
    894590 8xte:A (1.99) BS02 A1LWB N/A N/A A0A0B5L781 39150221
    894591 8xte:B (1.99) BS01 SAH N/A N/A A0A0B5L781 39150221
    894592 8xte:B (1.99) BS02 A1LWB N/A N/A A0A0B5L781 39150221
    894593 8xte:C (1.99) BS01 SAH N/A N/A A0A0B5L781 39150221
    894594 8xte:C (1.99) BS02 A1LWB N/A N/A A0A0B5L781 39150221
    894595 8xte:D (1.99) BS01 SAH N/A N/A A0A0B5L781 39150221
    894596 8xte:D (1.99) BS02 A1LWB N/A N/A A0A0B5L781 39150221
    894597 8xte:E (1.99) BS01 SAH N/A N/A A0A0B5L781 39150221
    894598 8xte:E (1.99) BS02 A1LWB N/A N/A A0A0B5L781 39150221
    894599 8xte:F (1.99) BS01 SAH N/A N/A A0A0B5L781 39150221
    894600 8xte:F (1.99) BS02 A1LWB N/A N/A A0A0B5L781 39150221
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023)(download the PDF file).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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