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●I-TASSER ●I-TASSER-MTD ●C-I-TASSER ●CR-I-TASSER ●QUARK ●C-QUARK ●LOMETS ●MUSTER ●CEthreader ●SEGMER ●DeepFold ●DeepFoldRNA ●FoldDesign ●COFACTOR ●COACH ●MetaGO ●TripletGO ●IonCom ●FG-MD ●ModRefiner ●REMO ●DEMO ●DEMO-EM ●SPRING ●COTH ●Threpp ●PEPPI ●BSpred ●ANGLOR ●EDock ●BSP-SLIM ●SAXSTER ●FUpred ●ThreaDom ●ThreaDomEx ●EvoDesign ●BindProf ●BindProfX ●SSIPe ●GPCR-I-TASSER ●MAGELLAN ●ResQ ●STRUM ●DAMpred

●TM-score ●TM-align ●US-align ●MM-align ●RNA-align ●NW-align ●LS-align ●EDTSurf ●MVP ●MVP-Fit ●SPICKER ●HAAD ●PSSpred ●3DRobot ●MR-REX ●I-TASSER-MR ●SVMSEQ ●NeBcon ●ResPRE ●TripletRes ●DeepPotential ●WDL-RF ●ATPbind ●DockRMSD ●DeepMSA ●FASPR ●EM-Refiner ●GPU-I-TASSER

●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
Download all results in tab-seperated text for 903398 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    894201 8xsy:SS (3.0) BS01 rna N/A GO:0002181 ... P62269 38942792
    894202 8xsy:ST (3.0) BS01 rna N/A GO:0000028 ... P39019 38942792
    894203 8xsy:SU (3.0) BS01 rna N/A GO:0002181 ... P60866 38942792
    894204 8xsy:SW (3.0) BS01 rna N/A GO:0002181 ... P62244 38942792
    894205 8xsy:SX (3.0) BS01 rna N/A GO:0002181 ... P62266 38942792
    894206 8xsy:SY (3.0) BS01 rna N/A GO:0002181 ... P62847 38942792
    894207 8xsy:SZ (3.0) BS01 rna N/A GO:0002181 ... P62851 38942792
    894208 8xsy:Sa (3.0) BS01 rna N/A GO:0002181 ... P62854 38942792
    894209 8xsy:Sa (3.0) BS02 ZN N/A GO:0002181 ... P62854 38942792
    894210 8xsy:Sb (3.0) BS01 rna N/A GO:0000028 ... P42677 38942792
    894211 8xsy:Sc (3.0) BS01 rna N/A GO:0000028 ... P62857 38942792
    894212 8xsy:Sd (3.0) BS01 rna N/A GO:0002181 ... P62273 38942792
    894213 8xsy:Se (3.0) BS01 rna N/A N/A P62861 38942792
    894214 8xsy:Sf (3.0) BS01 rna N/A GO:0002181 ... P62979 38942792
    894215 8xsy:Sg (3.0) BS01 rna N/A GO:0001891 ... P63244 38942792
    894216 8xsz:CA (3.2) BS01 rna N/A GO:0003676 ... Q9UQ80 38942792
    894217 8xsz:LA (3.2) BS01 rna N/A GO:0002181 ... P62917 38942792
    894218 8xsz:LA (3.2) BS02 rna N/A GO:0002181 ... P62917 38942792
    894219 8xsz:LA (3.2) BS03 MG N/A GO:0002181 ... P62917 38942792
    894220 8xsz:LB (3.2) BS01 rna N/A GO:0002181 ... P39023 38942792
    894221 8xsz:LC (3.2) BS01 rna N/A GO:0002181 ... P36578 38942792
    894222 8xsz:LC (3.2) BS02 rna N/A GO:0002181 ... P36578 38942792
    894223 8xsz:LD (3.2) BS01 rna N/A GO:0000027 ... P46777 38942792
    894224 8xsz:LD (3.2) BS02 rna N/A GO:0000027 ... P46777 38942792
    894225 8xsz:LE (3.2) BS01 rna N/A GO:0000027 ... Q02878 38942792
    894226 8xsz:LF (3.2) BS01 rna N/A GO:0000463 ... P18124 38942792
    894227 8xsz:LF (3.2) BS02 rna N/A GO:0000463 ... P18124 38942792
    894228 8xsz:LG (3.2) BS01 rna N/A GO:0000470 ... P62424 38942792
    894229 8xsz:LG (3.2) BS02 rna N/A GO:0000470 ... P62424 38942792
    894230 8xsz:LH (3.2) BS01 rna N/A GO:0002181 ... P32969 38942792
    894231 8xsz:LI (3.2) BS01 rna N/A GO:0000027 ... P27635 38942792
    894232 8xsz:LI (3.2) BS02 rna N/A GO:0000027 ... P27635 38942792
    894233 8xsz:LI (3.2) BS03 rna N/A GO:0000027 ... P27635 38942792
    894234 8xsz:LJ (3.2) BS01 rna N/A GO:0000027 ... P62913 38942792
    894235 8xsz:LJ (3.2) BS02 rna N/A GO:0000027 ... P62913 38942792
    894236 8xsz:LL (3.2) BS01 rna N/A GO:0001824 ... P26373 38942792
    894237 8xsz:LL (3.2) BS02 rna N/A GO:0001824 ... P26373 38942792
    894238 8xsz:LM (3.2) BS01 rna N/A GO:0002181 ... P50914 38942792
    894239 8xsz:LN (3.2) BS01 rna N/A GO:0002181 ... P61313 38942792
    894240 8xsz:LN (3.2) BS02 rna N/A GO:0002181 ... P61313 38942792
    894241 8xsz:LO (3.2) BS01 rna N/A GO:0002181 ... P40429 38942792
    894242 8xsz:LP (3.2) BS01 rna N/A GO:0002181 ... P18621 38942792
    894243 8xsz:LP (3.2) BS02 rna N/A GO:0002181 ... P18621 38942792
    894244 8xsz:LQ (3.2) BS01 rna N/A GO:0002181 ... Q07020 38942792
    894245 8xsz:LR (3.2) BS01 rna N/A GO:0002181 ... P84098 38942792
    894246 8xsz:LS (3.2) BS01 rna N/A GO:0002181 ... Q02543 38942792
    894247 8xsz:LS (3.2) BS02 rna N/A GO:0002181 ... Q02543 38942792
    894248 8xsz:LT (3.2) BS01 rna N/A GO:0002181 ... P46778 38942792
    894249 8xsz:LT (3.2) BS02 rna N/A GO:0002181 ... P46778 38942792
    894250 8xsz:LU (3.2) BS01 rna N/A GO:0002181 ... P35268 38942792
    894251 8xsz:LV (3.2) BS01 rna N/A GO:0000122 ... P62829 38942792
    894252 8xsz:LV (3.2) BS02 rna N/A GO:0000122 ... P62829 38942792
    894253 8xsz:LW (3.2) BS01 rna N/A GO:0000027 ... P83731 38942792
    894254 8xsz:LW (3.2) BS02 rna N/A GO:0000027 ... P83731 38942792
    894255 8xsz:LX (3.2) BS01 rna N/A GO:0000027 ... P62750 38942792
    894256 8xsz:LX (3.2) BS02 rna N/A GO:0000027 ... P62750 38942792
    894257 8xsz:LY (3.2) BS01 rna N/A GO:0002181 ... P61254 38942792
    894258 8xsz:LY (3.2) BS02 rna N/A GO:0002181 ... P61254 38942792
    894259 8xsz:LZ (3.2) BS01 rna N/A GO:0002181 ... P61353 38942792
    894260 8xsz:La (3.2) BS01 rna N/A GO:0002181 ... P46776 38942792
    894261 8xsz:Lb (3.2) BS01 rna N/A GO:0002181 ... P47914 38942792
    894262 8xsz:Lc (3.2) BS01 rna N/A GO:0002181 ... P62888 38942792
    894263 8xsz:Lc (3.2) BS02 rna N/A GO:0002181 ... P62888 38942792
    894264 8xsz:Lc (3.2) BS03 peptide N/A GO:0002181 ... P62888 38942792
    894265 8xsz:Ld (3.2) BS01 rna N/A GO:0002181 ... P62899 38942792
    894266 8xsz:Le (3.2) BS01 rna N/A GO:0002181 ... P62910 38942792
    894267 8xsz:Le (3.2) BS02 MG N/A GO:0002181 ... P62910 38942792
    894268 8xsz:Lf (3.2) BS01 rna N/A GO:0000049 ... P18077 38942792
    894269 8xsz:Lg (3.2) BS01 rna N/A GO:0002181 ... P49207 38942792
    894270 8xsz:Lg (3.2) BS02 MG N/A GO:0002181 ... P49207 38942792
    894271 8xsz:Lg (3.2) BS03 ZN N/A GO:0002181 ... P49207 38942792
    894272 8xsz:Lh (3.2) BS01 rna N/A GO:0000463 ... P42766 38942792
    894273 8xsz:Lh (3.2) BS02 rna N/A GO:0000463 ... P42766 38942792
    894274 8xsz:Li (3.2) BS01 rna N/A GO:0002181 ... Q9Y3U8 38942792
    894275 8xsz:Lj (3.2) BS01 rna N/A GO:0002181 ... P61927 38942792
    894276 8xsz:Lj (3.2) BS02 rna N/A GO:0002181 ... P61927 38942792
    894277 8xsz:Lj (3.2) BS03 ZN N/A GO:0002181 ... P61927 38942792
    894278 8xsz:Lk (3.2) BS01 rna N/A GO:0001501 ... P63173 38942792
    894279 8xsz:Ll (3.2) BS01 rna N/A GO:0002181 ... P62891 38942792
    894280 8xsz:Ll (3.2) BS02 rna N/A GO:0002181 ... P62891 38942792
    894281 8xsz:Lm (3.2) BS01 rna N/A GO:0002181 ... P62987 38942792
    894282 8xsz:Lm (3.2) BS02 ZN N/A GO:0002181 ... P62987 38942792
    894283 8xsz:Lo (3.2) BS01 rna N/A GO:0002181 ... P83881 38942792
    894284 8xsz:Lo (3.2) BS02 rna N/A GO:0002181 ... P83881 38942792
    894285 8xsz:Lo (3.2) BS03 ZN N/A GO:0002181 ... P83881 38942792
    894286 8xsz:Lp (3.2) BS01 rna N/A GO:0002181 ... P61513 38942792
    894287 8xsz:Lp (3.2) BS02 rna N/A GO:0002181 ... P61513 38942792
    894288 8xsz:Lp (3.2) BS03 ZN N/A GO:0002181 ... P61513 38942792
    894289 8xsz:Lr (3.2) BS01 rna N/A GO:0002181 ... P46779 38942792
    894290 8xsz:Ls (3.2) BS01 rna N/A GO:0000027 ... P05388 38942792
    894291 8xsz:Lt (3.2) BS01 rna N/A GO:0002181 ... P30050 38942792
    894292 8xsz:SA (3.2) BS01 rna N/A GO:0000028 ... P08865 38942792
    894293 8xsz:SB (3.2) BS01 rna N/A GO:0002181 ... P61247 38942792
    894294 8xsz:SB (3.2) BS02 rna N/A GO:0002181 ... P61247 38942792
    894295 8xsz:SC (3.2) BS01 rna N/A GO:0002181 ... P15880 38942792
    894296 8xsz:SD (3.2) BS01 rna N/A GO:0000977 ... P23396 38942792
    894297 8xsz:SE (3.2) BS01 rna N/A GO:0002181 ... P62701 38942792
    894298 8xsz:SF (3.2) BS01 rna N/A GO:0000028 ... P46782 38942792
    894299 8xsz:SG (3.2) BS01 rna N/A GO:0000082 ... P62753 38942792
    894300 8xsz:SH (3.2) BS01 rna N/A GO:0001843 ... P62081 38942792
    894301 8xsz:SI (3.2) BS01 rna N/A GO:0000462 ... P62241 38942792
    894302 8xsz:SI (3.2) BS02 MG N/A GO:0000462 ... P62241 38942792
    894303 8xsz:SI (3.2) BS03 MG N/A GO:0000462 ... P62241 38942792
    894304 8xsz:SJ (3.2) BS01 rna N/A GO:0002181 ... P46781 38942792
    894305 8xsz:SK (3.2) BS01 rna N/A GO:0002181 ... P46783 38942792
    894306 8xsz:SL (3.2) BS01 rna N/A GO:0002181 ... P62280 38942792
    894307 8xsz:SM (3.2) BS01 rna N/A GO:0002181 ... P25398 38942792
    894308 8xsz:SM (3.2) BS02 ZN N/A GO:0002181 ... P25398 38942792
    894309 8xsz:SN (3.2) BS01 rna N/A GO:0002181 ... P62277 38942792
    894310 8xsz:SN (3.2) BS02 rna N/A GO:0002181 ... P62277 38942792
    894311 8xsz:SO (3.2) BS01 rna N/A GO:0000028 ... P62263 38942792
    894312 8xsz:SP (3.2) BS01 rna N/A GO:0000028 ... P62841 38942792
    894313 8xsz:SP (3.2) BS02 rna N/A GO:0000028 ... P62841 38942792
    894314 8xsz:SQ (3.2) BS01 rna N/A GO:0000462 ... P62249 38942792
    894315 8xsz:SR (3.2) BS01 rna N/A GO:0002181 ... P08708 38942792
    894316 8xsz:SS (3.2) BS01 rna N/A GO:0002181 ... P62269 38942792
    894317 8xsz:ST (3.2) BS01 rna N/A GO:0000028 ... P39019 38942792
    894318 8xsz:SU (3.2) BS01 rna N/A GO:0002181 ... P60866 38942792
    894319 8xsz:SW (3.2) BS01 rna N/A GO:0002181 ... P62244 38942792
    894320 8xsz:SX (3.2) BS01 rna N/A GO:0002181 ... P62266 38942792
    894321 8xsz:SY (3.2) BS01 rna N/A GO:0002181 ... P62847 38942792
    894322 8xsz:SZ (3.2) BS01 rna N/A GO:0002181 ... P62851 38942792
    894323 8xsz:Sa (3.2) BS01 rna N/A GO:0002181 ... P62854 38942792
    894324 8xsz:Sb (3.2) BS01 rna N/A GO:0000028 ... P42677 38942792
    894325 8xsz:Sc (3.2) BS01 rna N/A GO:0000028 ... P62857 38942792
    894326 8xsz:Sd (3.2) BS01 rna N/A GO:0002181 ... P62273 38942792
    894327 8xsz:Se (3.2) BS01 rna N/A N/A P62861 38942792
    894328 8xsz:Sf (3.2) BS01 rna N/A GO:0002181 ... P62979 38942792
    894329 8xsz:Sg (3.2) BS01 rna N/A GO:0001891 ... P63244 38942792
    894330 8xt0:L3 (3.2) BS01 rna N/A GO:0005515 ... Q96EL3 38942792
    894331 8xt0:L4 (3.2) BS01 rna N/A GO:0003723 ... Q6P161 38942792
    894332 8xt0:L6 (3.2) BS01 rna N/A GO:0003735 ... Q9BQC6 38942792
    894333 8xt0:L8 (3.2) BS01 rna N/A GO:0005515 ... Q8TAE8 38942792
    894334 8xt0:LB (3.2) BS01 rna N/A GO:0003723 ... Q5T653 38942792
    894335 8xt0:LB (3.2) BS02 MG N/A GO:0003723 ... Q5T653 38942792
    894336 8xt0:LC (3.2) BS01 rna N/A GO:0003723 ... P09001 38942792
    894337 8xt0:LD (3.2) BS01 rna N/A GO:0003723 ... Q9BYD3 38942792
    894338 8xt0:LI (3.2) BS01 rna N/A GO:0003723 ... Q9BYD2 38942792
    894339 8xt0:LJ (3.2) BS01 rna N/A GO:0003723 ... Q7Z7H8 38942792
    894340 8xt0:LK (3.2) BS01 rna N/A GO:0003723 ... Q9Y3B7 38942792
    894341 8xt0:LM (3.2) BS01 rna N/A GO:0003723 ... Q9BYD1 38942792
    894342 8xt0:LN (3.2) BS01 rna N/A GO:0003723 ... Q6P1L8 38942792
    894343 8xt0:LO (3.2) BS01 rna N/A GO:0003723 ... Q9P015 38942792
    894344 8xt0:LP (3.2) BS01 rna N/A GO:0003735 ... Q9NX20 38942792
    894345 8xt0:LQ (3.2) BS01 rna N/A GO:0003735 ... Q9NRX2 38942792
    894346 8xt0:LR (3.2) BS01 rna N/A GO:0005737 ... A8K9D2 38942792
    894347 8xt0:LR (3.2) BS02 rna N/A GO:0005737 ... A8K9D2 38942792
    894348 8xt0:LS (3.2) BS01 rna N/A GO:0003735 ... P49406 38942792
    894349 8xt0:LT (3.2) BS01 rna N/A GO:0003723 ... Q9BYC9 38942792
    894350 8xt0:LU (3.2) BS01 rna N/A GO:0003723 ... Q7Z2W9 38942792
    894351 8xt0:LV (3.2) BS01 rna N/A GO:0005739 ... E7ESL0 38942792
    894352 8xt0:LW (3.2) BS01 rna N/A GO:0001650 ... Q16540 38942792
    894353 8xt0:LX (3.2) BS01 rna N/A GO:0005739 ... Q96A35 38942792
    894354 8xt0:La (3.2) BS01 rna N/A GO:0003723 ... Q9P0M9 38942792
    894355 8xt0:Lb (3.2) BS01 rna N/A GO:0003723 ... Q13084 38942792
    894356 8xt0:Ld (3.2) BS01 rna N/A GO:0005739 ... Q8TCC3 38942792
    894357 8xt0:Lf (3.2) BS01 rna N/A GO:0003723 ... Q9BYC8 38942792
    894358 8xt0:Lf (3.2) BS02 ZN N/A GO:0003723 ... Q9BYC8 38942792
    894359 8xt0:Lg (3.2) BS01 rna N/A GO:0005739 ... O75394 38942792
    894360 8xt0:Lh (3.2) BS01 rna N/A GO:0003735 ... Q9BQ48 38942792
    894361 8xt0:Li (3.2) BS01 rna N/A GO:0003735 ... Q9NZE8 38942792
    894362 8xt0:Lj (3.2) BS01 rna N/A GO:0005515 ... Q9P0J6 38942792
    894363 8xt0:Lj (3.2) BS02 ZN N/A GO:0005515 ... Q9P0J6 38942792
    894364 8xt0:Lk (3.2) BS01 rna N/A GO:0003723 ... Q9BZE1 38942792
    894365 8xt0:Ll (3.2) BS01 rna N/A GO:0005515 ... Q96DV4 38942792
    894366 8xt0:Ll (3.2) BS02 rna N/A GO:0005515 ... Q96DV4 38942792
    894367 8xt0:Ln (3.2) BS01 rna N/A GO:0003723 ... Q9NQ50 38942792
    894368 8xt0:Lo (3.2) BS01 rna N/A GO:0003723 ... Q8IXM3 38942792
    894369 8xt0:Lp (3.2) BS01 rna N/A GO:0003723 ... Q9Y6G3 38942792
    894370 8xt0:Lq (3.2) BS01 rna N/A GO:0003723 ... Q8N983 38942792
    894371 8xt0:Lr (3.2) BS01 rna N/A GO:0003723 ... Q9H9J2 38942792
    894372 8xt0:Lu (3.2) BS01 rna N/A GO:0003674 ... Q9HD33 38942792
    894373 8xt0:Lv (3.2) BS01 rna N/A GO:0005515 ... Q96GC5 38942792
    894374 8xt0:Lv (3.2) BS02 rna N/A GO:0005515 ... Q96GC5 38942792
    894375 8xt0:Lw (3.2) BS01 rna N/A GO:0003735 ... Q13405 38942792
    894376 8xt0:Ly (3.2) BS01 rna N/A GO:0003735 ... Q4U2R6 38942792
    894377 8xt0:Lz (3.2) BS01 rna N/A N/A A8K7J6 38942792
    894378 8xt0:SB (3.2) BS01 rna N/A GO:0003735 ... Q9Y399 38942792
    894379 8xt0:SB (3.2) BS02 ZN N/A GO:0003735 ... Q9Y399 38942792
    894380 8xt0:SE (3.2) BS01 rna N/A GO:0003723 ... P82675 38942792
    894381 8xt0:SF (3.2) BS01 rna N/A GO:0003735 ... P82932 38942792
    894382 8xt0:SG (3.2) BS01 rna N/A GO:0000028 ... Q9Y2R9 38942792
    894383 8xt0:SI (3.2) BS01 rna N/A GO:0003723 ... P82933 38942792
    894384 8xt0:SJ (3.2) BS01 rna N/A GO:0003674 ... P82664 38942792
    894385 8xt0:SK (3.2) BS01 rna N/A GO:0003723 ... P82912 38942792
    894386 8xt0:SL (3.2) BS01 rna N/A GO:0003723 ... O15235 38942792
    894387 8xt0:SN (3.2) BS01 rna N/A GO:0003723 ... O60783 38942792
    894388 8xt0:SO (3.2) BS01 rna N/A GO:0003723 ... P82914 38942792
    894389 8xt0:SP (3.2) BS01 rna N/A GO:0003735 ... Q9Y3D3 38942792
    894390 8xt0:SQ (3.2) BS01 rna N/A GO:0003735 ... Q9Y2R5 38942792
    894391 8xt0:SR (3.2) BS01 rna N/A GO:0003735 ... Q9NVS2 38942792
    894392 8xt0:SS (3.2) BS01 rna N/A GO:0003735 ... Q9Y676 38942792
    894393 8xt0:SS (3.2) BS02 ZN N/A GO:0003735 ... Q9Y676 38942792
    894394 8xt0:ST (3.2) BS01 rna N/A GO:0003735 ... Q9Y3D5 38942792
    894395 8xt0:SW (3.2) BS01 rna N/A GO:0003723 ... P82921 38942792
    894396 8xt0:SY (3.2) BS01 rna N/A GO:0003723 ... Q9Y3D9 38942792
    894397 8xt0:SZ (3.2) BS01 rna N/A GO:0003723 ... Q96EL2 38942792
    894398 8xt0:Sa (3.2) BS01 rna N/A GO:0003735 ... P82663 38942792
    894399 8xt0:Sa (3.2) BS02 ZN N/A GO:0003735 ... P82663 38942792
    894400 8xt0:Sb (3.2) BS01 rna N/A GO:0003723 ... Q9BYN8 38942792
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023)(download the PDF file).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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