Home Research COVID-19 Services Publications People Teaching Job Opening News Forum --> -->
Online Services

●I-TASSER ●I-TASSER-MTD ●C-I-TASSER ●CR-I-TASSER ●QUARK ●C-QUARK ●LOMETS ●MUSTER ●CEthreader ●SEGMER ●DeepFold ●DeepFoldRNA ●FoldDesign ●COFACTOR ●COACH ●MetaGO ●TripletGO ●IonCom ●FG-MD ●ModRefiner ●REMO ●DEMO ●DEMO-EM ●DMFold ●SPRING ●COTH ●Threpp ●PEPPI ●BSpred ●ANGLOR ●EDock ●BSP-SLIM ●SAXSTER ●FUpred ●ThreaDom ●ThreaDomEx ●EvoDesign ●BindProf ●BindProfX ●SSIPe ●GPCR-I-TASSER ●MAGELLAN ●ResQ ●STRUM ●DAMpred

●TM-score ●TM-align ●US-align ●MM-align ●RNA-align ●NW-align ●LS-align ●EDTSurf ●MVP ●MVP-Fit ●SPICKER ●HAAD ●PSSpred ●3DRobot ●MR-REX ●I-TASSER-MR ●SVMSEQ ●NeBcon ●ResPRE ●TripletRes ●DeepPotential ●WDL-RF ●ATPbind ●DockRMSD ●DeepMSA ●FASPR ●EM-Refiner ●GPU-I-TASSER

●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
Download all results in tab-seperated text for 903398 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

    • Sort results by
    << < 4461 4462 4463 4464 4465 4466 4467 4468 4469 4470 4471 4472 4473 4474 4475 4476 4477 4478 4479 4480 4481 > >>
    Go to page

    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    894001 8xsx:LC (2.4) BS01 rna N/A GO:0002181 ... P36578 38942792
    894002 8xsx:LC (2.4) BS02 rna N/A GO:0002181 ... P36578 38942792
    894003 8xsx:LD (2.4) BS01 rna N/A GO:0000027 ... P46777 38942792
    894004 8xsx:LD (2.4) BS02 rna N/A GO:0000027 ... P46777 38942792
    894005 8xsx:LE (2.4) BS01 rna N/A GO:0000027 ... Q02878 38942792
    894006 8xsx:LF (2.4) BS01 rna N/A GO:0000463 ... P18124 38942792
    894007 8xsx:LF (2.4) BS02 rna N/A GO:0000463 ... P18124 38942792
    894008 8xsx:LG (2.4) BS01 rna N/A GO:0000470 ... P62424 38942792
    894009 8xsx:LG (2.4) BS02 rna N/A GO:0000470 ... P62424 38942792
    894010 8xsx:LH (2.4) BS01 rna N/A GO:0002181 ... P32969 38942792
    894011 8xsx:LI (2.4) BS01 rna N/A GO:0000027 ... Q96L21 38942792
    894012 8xsx:LI (2.4) BS02 rna N/A GO:0000027 ... Q96L21 38942792
    894013 8xsx:LJ (2.4) BS01 rna N/A GO:0000027 ... P62913 38942792
    894014 8xsx:LJ (2.4) BS02 rna N/A GO:0000027 ... P62913 38942792
    894015 8xsx:LK (2.4) BS01 rna N/A GO:0002181 ... P30050 38942792
    894016 8xsx:LL (2.4) BS01 rna N/A GO:0001824 ... P26373 38942792
    894017 8xsx:LL (2.4) BS02 rna N/A GO:0001824 ... P26373 38942792
    894018 8xsx:LM (2.4) BS01 rna N/A GO:0002181 ... P50914 38942792
    894019 8xsx:LN (2.4) BS01 rna N/A GO:0002181 ... P61313 38942792
    894020 8xsx:LN (2.4) BS02 rna N/A GO:0002181 ... P61313 38942792
    894021 8xsx:LO (2.4) BS01 rna N/A GO:0002181 ... P40429 38942792
    894022 8xsx:LP (2.4) BS01 rna N/A GO:0002181 ... P18621 38942792
    894023 8xsx:LP (2.4) BS02 rna N/A GO:0002181 ... P18621 38942792
    894024 8xsx:LQ (2.4) BS01 rna N/A GO:0002181 ... Q07020 38942792
    894025 8xsx:LR (2.4) BS01 rna N/A GO:0002181 ... P84098 38942792
    894026 8xsx:LR (2.4) BS02 rna N/A GO:0002181 ... P84098 38942792
    894027 8xsx:LS (2.4) BS01 rna N/A GO:0002181 ... Q02543 38942792
    894028 8xsx:LS (2.4) BS02 rna N/A GO:0002181 ... Q02543 38942792
    894029 8xsx:LT (2.4) BS01 rna N/A GO:0002181 ... P46778 38942792
    894030 8xsx:LT (2.4) BS02 rna N/A GO:0002181 ... P46778 38942792
    894031 8xsx:LU (2.4) BS01 rna N/A GO:0002181 ... P35268 38942792
    894032 8xsx:LV (2.4) BS01 rna N/A GO:0000122 ... P62829 38942792
    894033 8xsx:LW (2.4) BS01 rna N/A GO:0000027 ... P83731 38942792
    894034 8xsx:LW (2.4) BS02 rna N/A GO:0000027 ... P83731 38942792
    894035 8xsx:LX (2.4) BS01 rna N/A GO:0000027 ... P62750 38942792
    894036 8xsx:LX (2.4) BS02 rna N/A GO:0000027 ... P62750 38942792
    894037 8xsx:LY (2.4) BS01 rna N/A GO:0002181 ... P61254 38942792
    894038 8xsx:LY (2.4) BS02 rna N/A GO:0002181 ... P61254 38942792
    894039 8xsx:LZ (2.4) BS01 rna N/A GO:0002181 ... P61353 38942792
    894040 8xsx:La (2.4) BS01 rna N/A GO:0002181 ... P46776 38942792
    894041 8xsx:Lb (2.4) BS01 rna N/A GO:0002181 ... P47914 38942792
    894042 8xsx:Lc (2.4) BS01 rna N/A GO:0002181 ... P62888 38942792
    894043 8xsx:Lc (2.4) BS02 rna N/A GO:0002181 ... P62888 38942792
    894044 8xsx:Ld (2.4) BS01 rna N/A GO:0002181 ... P62899 38942792
    894045 8xsx:Le (2.4) BS01 rna N/A GO:0002181 ... P62910 38942792
    894046 8xsx:Le (2.4) BS02 MG N/A GO:0002181 ... P62910 38942792
    894047 8xsx:Lf (2.4) BS01 rna N/A GO:0000049 ... P18077 38942792
    894048 8xsx:Lg (2.4) BS01 rna N/A GO:0002181 ... P49207 38942792
    894049 8xsx:Lg (2.4) BS02 MG N/A GO:0002181 ... P49207 38942792
    894050 8xsx:Lg (2.4) BS03 ZN N/A GO:0002181 ... P49207 38942792
    894051 8xsx:Lh (2.4) BS01 rna N/A GO:0000463 ... P42766 38942792
    894052 8xsx:Lh (2.4) BS02 rna N/A GO:0000463 ... P42766 38942792
    894053 8xsx:Li (2.4) BS01 rna N/A GO:0002181 ... Q9Y3U8 38942792
    894054 8xsx:Lj (2.4) BS01 rna N/A GO:0002181 ... P61927 38942792
    894055 8xsx:Lj (2.4) BS02 rna N/A GO:0002181 ... P61927 38942792
    894056 8xsx:Lj (2.4) BS03 ZN N/A GO:0002181 ... P61927 38942792
    894057 8xsx:Lk (2.4) BS01 rna N/A GO:0001501 ... P63173 38942792
    894058 8xsx:Ll (2.4) BS01 rna N/A GO:0002181 ... P62891 38942792
    894059 8xsx:Ll (2.4) BS02 rna N/A GO:0002181 ... P62891 38942792
    894060 8xsx:Lm (2.4) BS01 rna N/A GO:0002181 ... P62987 38942792
    894061 8xsx:Lm (2.4) BS02 ZN N/A GO:0002181 ... P62987 38942792
    894062 8xsx:Lo (2.4) BS01 rna N/A GO:0002181 ... P83881 38942792
    894063 8xsx:Lo (2.4) BS02 rna N/A GO:0002181 ... P83881 38942792
    894064 8xsx:Lo (2.4) BS03 ZN N/A GO:0002181 ... P83881 38942792
    894065 8xsx:Lp (2.4) BS01 rna N/A GO:0002181 ... P61513 38942792
    894066 8xsx:Lp (2.4) BS02 ZN N/A GO:0002181 ... P61513 38942792
    894067 8xsx:Lr (2.4) BS01 rna N/A GO:0002181 ... P46779 38942792
    894068 8xsx:Ls (2.4) BS01 rna N/A GO:0000027 ... P05388 38942792
    894069 8xsx:Lz (2.4) BS01 rna N/A GO:0002181 ... P62906 38942792
    894070 8xsx:SA (2.4) BS01 rna N/A GO:0000028 ... P08865 38942792
    894071 8xsx:SB (2.4) BS01 rna N/A GO:0002181 ... P61247 38942792
    894072 8xsx:SC (2.4) BS01 rna N/A GO:0002181 ... P15880 38942792
    894073 8xsx:SD (2.4) BS01 rna N/A GO:0000977 ... P23396 38942792
    894074 8xsx:SE (2.4) BS01 rna N/A GO:0002181 ... P62701 38942792
    894075 8xsx:SF (2.4) BS01 rna N/A GO:0000028 ... P46782 38942792
    894076 8xsx:SG (2.4) BS01 rna N/A GO:0000082 ... P62753 38942792
    894077 8xsx:SH (2.4) BS01 rna N/A GO:0001843 ... P62081 38942792
    894078 8xsx:SI (2.4) BS01 rna N/A GO:0000462 ... P62241 38942792
    894079 8xsx:SI (2.4) BS02 rna N/A GO:0000462 ... P62241 38942792
    894080 8xsx:SJ (2.4) BS01 rna N/A GO:0002181 ... P46781 38942792
    894081 8xsx:SK (2.4) BS01 rna N/A GO:0002181 ... P46783 38942792
    894082 8xsx:SL (2.4) BS01 rna N/A GO:0002181 ... P62280 38942792
    894083 8xsx:SM (2.4) BS01 rna N/A GO:0002181 ... P25398 38942792
    894084 8xsx:SN (2.4) BS01 rna N/A GO:0002181 ... P62277 38942792
    894085 8xsx:SN (2.4) BS02 rna N/A GO:0002181 ... P62277 38942792
    894086 8xsx:SO (2.4) BS01 rna N/A GO:0000028 ... P62263 38942792
    894087 8xsx:SP (2.4) BS01 rna N/A GO:0000028 ... P62841 38942792
    894088 8xsx:SQ (2.4) BS01 rna N/A GO:0000462 ... P62249 38942792
    894089 8xsx:SR (2.4) BS01 rna N/A GO:0002181 ... P08708 38942792
    894090 8xsx:SS (2.4) BS01 rna N/A GO:0002181 ... P62269 38942792
    894091 8xsx:ST (2.4) BS01 rna N/A GO:0000028 ... P39019 38942792
    894092 8xsx:SU (2.4) BS01 rna N/A GO:0002181 ... P60866 38942792
    894093 8xsx:SW (2.4) BS01 rna N/A GO:0002181 ... P62244 38942792
    894094 8xsx:SX (2.4) BS01 rna N/A GO:0002181 ... P62266 38942792
    894095 8xsx:SY (2.4) BS01 rna N/A GO:0002181 ... P62847 38942792
    894096 8xsx:SZ (2.4) BS01 rna N/A GO:0002181 ... P62851 38942792
    894097 8xsx:Sa (2.4) BS01 rna N/A GO:0002181 ... P62854 38942792
    894098 8xsx:Sa (2.4) BS02 ZN N/A GO:0002181 ... P62854 38942792
    894099 8xsx:Sb (2.4) BS01 rna N/A GO:0000028 ... P42677 38942792
    894100 8xsx:Sc (2.4) BS01 rna N/A GO:0000028 ... P62857 38942792
    894101 8xsx:Sd (2.4) BS01 rna N/A GO:0002181 ... P62273 38942792
    894102 8xsx:Se (2.4) BS01 rna N/A N/A P62861 38942792
    894103 8xsx:Sf (2.4) BS01 rna N/A GO:0002181 ... P62979 38942792
    894104 8xsx:Sg (2.4) BS01 rna N/A GO:0001891 ... P63244 38942792
    894105 8xsy:CA (3.0) BS01 rna N/A GO:0003676 ... Q9UQ80 38942792
    894106 8xsy:CE (3.0) BS01 rna N/A GO:0003713 ... Q96CT7 38942792
    894107 8xsy:LA (3.0) BS01 rna N/A GO:0002181 ... P62917 38942792
    894108 8xsy:LA (3.0) BS02 rna N/A GO:0002181 ... P62917 38942792
    894109 8xsy:LA (3.0) BS03 MG N/A GO:0002181 ... P62917 38942792
    894110 8xsy:LB (3.0) BS01 rna N/A GO:0002181 ... P39023 38942792
    894111 8xsy:LC (3.0) BS01 rna N/A GO:0002181 ... P36578 38942792
    894112 8xsy:LC (3.0) BS02 rna N/A GO:0002181 ... P36578 38942792
    894113 8xsy:LD (3.0) BS01 rna N/A GO:0000027 ... P46777 38942792
    894114 8xsy:LD (3.0) BS02 rna N/A GO:0000027 ... P46777 38942792
    894115 8xsy:LE (3.0) BS01 rna N/A GO:0000027 ... Q02878 38942792
    894116 8xsy:LF (3.0) BS01 rna N/A GO:0000463 ... P18124 38942792
    894117 8xsy:LF (3.0) BS02 rna N/A GO:0000463 ... P18124 38942792
    894118 8xsy:LG (3.0) BS01 rna N/A GO:0000470 ... P62424 38942792
    894119 8xsy:LG (3.0) BS02 rna N/A GO:0000470 ... P62424 38942792
    894120 8xsy:LH (3.0) BS01 rna N/A GO:0002181 ... P32969 38942792
    894121 8xsy:LI (3.0) BS01 rna N/A GO:0000027 ... P27635 38942792
    894122 8xsy:LI (3.0) BS02 rna N/A GO:0000027 ... P27635 38942792
    894123 8xsy:LJ (3.0) BS01 rna N/A GO:0000027 ... P62913 38942792
    894124 8xsy:LJ (3.0) BS02 rna N/A GO:0000027 ... P62913 38942792
    894125 8xsy:LL (3.0) BS01 rna N/A GO:0001824 ... P26373 38942792
    894126 8xsy:LL (3.0) BS02 rna N/A GO:0001824 ... P26373 38942792
    894127 8xsy:LM (3.0) BS01 rna N/A GO:0002181 ... P50914 38942792
    894128 8xsy:LN (3.0) BS01 rna N/A GO:0002181 ... P61313 38942792
    894129 8xsy:LN (3.0) BS02 rna N/A GO:0002181 ... P61313 38942792
    894130 8xsy:LO (3.0) BS01 rna N/A GO:0002181 ... P40429 38942792
    894131 8xsy:LP (3.0) BS01 rna N/A GO:0002181 ... P18621 38942792
    894132 8xsy:LP (3.0) BS02 rna N/A GO:0002181 ... P18621 38942792
    894133 8xsy:LQ (3.0) BS01 rna N/A GO:0002181 ... Q07020 38942792
    894134 8xsy:LR (3.0) BS01 rna N/A GO:0002181 ... P84098 38942792
    894135 8xsy:LR (3.0) BS02 rna N/A GO:0002181 ... P84098 38942792
    894136 8xsy:LS (3.0) BS01 rna N/A GO:0002181 ... Q02543 38942792
    894137 8xsy:LS (3.0) BS02 rna N/A GO:0002181 ... Q02543 38942792
    894138 8xsy:LT (3.0) BS01 rna N/A GO:0002181 ... P46778 38942792
    894139 8xsy:LT (3.0) BS02 rna N/A GO:0002181 ... P46778 38942792
    894140 8xsy:LU (3.0) BS01 rna N/A GO:0002181 ... P35268 38942792
    894141 8xsy:LV (3.0) BS01 rna N/A GO:0000122 ... P62829 38942792
    894142 8xsy:LW (3.0) BS01 rna N/A GO:0000027 ... P83731 38942792
    894143 8xsy:LW (3.0) BS02 rna N/A GO:0000027 ... P83731 38942792
    894144 8xsy:LX (3.0) BS01 rna N/A GO:0000027 ... P62750 38942792
    894145 8xsy:LX (3.0) BS02 rna N/A GO:0000027 ... P62750 38942792
    894146 8xsy:LY (3.0) BS01 rna N/A GO:0002181 ... P61254 38942792
    894147 8xsy:LY (3.0) BS02 rna N/A GO:0002181 ... P61254 38942792
    894148 8xsy:LZ (3.0) BS01 rna N/A GO:0002181 ... P61353 38942792
    894149 8xsy:La (3.0) BS01 rna N/A GO:0002181 ... P46776 38942792
    894150 8xsy:Lb (3.0) BS01 rna N/A GO:0002181 ... P47914 38942792
    894151 8xsy:Lc (3.0) BS01 rna N/A GO:0002181 ... P62888 38942792
    894152 8xsy:Lc (3.0) BS02 peptide N/A GO:0002181 ... P62888 38942792
    894153 8xsy:Ld (3.0) BS01 rna N/A GO:0002181 ... P62899 38942792
    894154 8xsy:Le (3.0) BS01 rna N/A GO:0002181 ... P62910 38942792
    894155 8xsy:Le (3.0) BS02 MG N/A GO:0002181 ... P62910 38942792
    894156 8xsy:Lf (3.0) BS01 rna N/A GO:0000049 ... P18077 38942792
    894157 8xsy:Lg (3.0) BS01 rna N/A GO:0002181 ... P49207 38942792
    894158 8xsy:Lg (3.0) BS02 peptide N/A GO:0002181 ... P49207 38942792
    894159 8xsy:Lg (3.0) BS03 MG N/A GO:0002181 ... P49207 38942792
    894160 8xsy:Lg (3.0) BS04 ZN N/A GO:0002181 ... P49207 38942792
    894161 8xsy:Lh (3.0) BS01 rna N/A GO:0000463 ... P42766 38942792
    894162 8xsy:Lh (3.0) BS02 rna N/A GO:0000463 ... P42766 38942792
    894163 8xsy:Li (3.0) BS01 rna N/A GO:0002181 ... Q9Y3U8 38942792
    894164 8xsy:Lj (3.0) BS01 rna N/A GO:0002181 ... P61927 38942792
    894165 8xsy:Lj (3.0) BS02 rna N/A GO:0002181 ... P61927 38942792
    894166 8xsy:Lj (3.0) BS03 ZN N/A GO:0002181 ... P61927 38942792
    894167 8xsy:Lk (3.0) BS01 rna N/A GO:0001501 ... P63173 38942792
    894168 8xsy:Ll (3.0) BS01 rna N/A GO:0002181 ... P62891 38942792
    894169 8xsy:Ll (3.0) BS02 rna N/A GO:0002181 ... P62891 38942792
    894170 8xsy:Lm (3.0) BS01 rna N/A GO:0002181 ... P62987 38942792
    894171 8xsy:Lm (3.0) BS02 ZN N/A GO:0002181 ... P62987 38942792
    894172 8xsy:Lo (3.0) BS01 rna N/A GO:0002181 ... P83881 38942792
    894173 8xsy:Lo (3.0) BS02 rna N/A GO:0002181 ... P83881 38942792
    894174 8xsy:Lo (3.0) BS03 ZN N/A GO:0002181 ... P83881 38942792
    894175 8xsy:Lp (3.0) BS01 rna N/A GO:0002181 ... P61513 38942792
    894176 8xsy:Lp (3.0) BS02 ZN N/A GO:0002181 ... P61513 38942792
    894177 8xsy:Lr (3.0) BS01 rna N/A GO:0002181 ... P46779 38942792
    894178 8xsy:Ls (3.0) BS01 rna N/A GO:0000027 ... P05388 38942792
    894179 8xsy:Lt (3.0) BS01 rna N/A GO:0002181 ... P30050 38942792
    894180 8xsy:SA (3.0) BS01 rna N/A GO:0000028 ... P08865 38942792
    894181 8xsy:SB (3.0) BS01 rna N/A GO:0002181 ... P61247 38942792
    894182 8xsy:SB (3.0) BS02 rna N/A GO:0002181 ... P61247 38942792
    894183 8xsy:SC (3.0) BS01 rna N/A GO:0002181 ... P15880 38942792
    894184 8xsy:SD (3.0) BS01 rna N/A GO:0000977 ... P23396 38942792
    894185 8xsy:SE (3.0) BS01 rna N/A GO:0002181 ... P62701 38942792
    894186 8xsy:SF (3.0) BS01 rna N/A GO:0000028 ... P46782 38942792
    894187 8xsy:SG (3.0) BS01 rna N/A GO:0000082 ... P62753 38942792
    894188 8xsy:SH (3.0) BS01 rna N/A GO:0001843 ... P62081 38942792
    894189 8xsy:SI (3.0) BS01 rna N/A GO:0000462 ... P62241 38942792
    894190 8xsy:SI (3.0) BS02 rna N/A GO:0000462 ... P62241 38942792
    894191 8xsy:SJ (3.0) BS01 rna N/A GO:0002181 ... P46781 38942792
    894192 8xsy:SK (3.0) BS01 rna N/A GO:0002181 ... P46783 38942792
    894193 8xsy:SL (3.0) BS01 rna N/A GO:0002181 ... P62280 38942792
    894194 8xsy:SM (3.0) BS01 rna N/A GO:0002181 ... P25398 38942792
    894195 8xsy:SM (3.0) BS02 ZN N/A GO:0002181 ... P25398 38942792
    894196 8xsy:SN (3.0) BS01 rna N/A GO:0002181 ... P62277 38942792
    894197 8xsy:SO (3.0) BS01 rna N/A GO:0000028 ... P62263 38942792
    894198 8xsy:SP (3.0) BS01 rna N/A GO:0000028 ... P62841 38942792
    894199 8xsy:SQ (3.0) BS01 rna N/A GO:0000462 ... P62249 38942792
    894200 8xsy:SR (3.0) BS01 rna N/A GO:0002181 ... P08708 38942792
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

    • yangzhanglabumich.edu | (734) 647-1549 | 100 Washtenaw Avenue, Ann Arbor, MI 48109-2218