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●TM-score ●TM-align ●US-align ●MM-align ●RNA-align ●NW-align ●LS-align ●EDTSurf ●MVP ●MVP-Fit ●SPICKER ●HAAD ●PSSpred ●3DRobot ●MR-REX ●I-TASSER-MR ●SVMSEQ ●NeBcon ●ResPRE ●TripletRes ●DeepPotential ●WDL-RF ●ATPbind ●DockRMSD ●DeepMSA ●FASPR ●EM-Refiner ●GPU-I-TASSER

●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
Download all results in tab-seperated text for 903398 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    893401 8xop:E (2.8) BS01 peptide 3.4.21.92 GO:0004176 ... A0A5B9BGY8 38501868
    893402 8xop:E (2.8) BS02 peptide 3.4.21.92 GO:0004176 ... A0A5B9BGY8 38501868
    893403 8xop:F (2.8) BS01 peptide 3.4.21.92 GO:0004176 ... A0A5B9BGY8 38501868
    893404 8xop:F (2.8) BS02 peptide 3.4.21.92 GO:0004176 ... A0A5B9BGY8 38501868
    893405 8xop:G (2.8) BS01 peptide 3.4.21.92 GO:0004176 ... A0A5B9BGY8 38501868
    893406 8xop:G (2.8) BS02 peptide 3.4.21.92 GO:0004176 ... A0A5B9BGY8 38501868
    893407 8xop:H (2.8) BS01 peptide 3.4.21.92 GO:0004176 ... A0A5B9BIX9 38501868
    893408 8xop:H (2.8) BS02 peptide 3.4.21.92 GO:0004176 ... A0A5B9BIX9 38501868
    893409 8xop:I (2.8) BS01 peptide 3.4.21.92 GO:0004176 ... A0A5B9BIX9 38501868
    893410 8xop:I (2.8) BS02 peptide 3.4.21.92 GO:0004176 ... A0A5B9BIX9 38501868
    893411 8xop:J (2.8) BS01 peptide 3.4.21.92 GO:0004176 ... A0A5B9BIX9 38501868
    893412 8xop:J (2.8) BS02 peptide 3.4.21.92 GO:0004176 ... A0A5B9BIX9 38501868
    893413 8xop:K (2.8) BS01 peptide 3.4.21.92 GO:0004176 ... A0A5B9BIX9 38501868
    893414 8xop:K (2.8) BS02 peptide 3.4.21.92 GO:0004176 ... A0A5B9BIX9 38501868
    893415 8xop:L (2.8) BS01 peptide 3.4.21.92 GO:0004176 ... A0A5B9BIX9 38501868
    893416 8xop:L (2.8) BS02 peptide 3.4.21.92 GO:0004176 ... A0A5B9BIX9 38501868
    893417 8xop:M (2.8) BS01 peptide 3.4.21.92 GO:0004176 ... A0A5B9BIX9 38501868
    893418 8xop:M (2.8) BS02 peptide 3.4.21.92 GO:0004176 ... A0A5B9BIX9 38501868
    893419 8xop:N (2.8) BS01 peptide 3.4.21.92 GO:0004176 ... A0A5B9BIX9 38501868
    893420 8xop:N (2.8) BS02 peptide 3.4.21.92 GO:0004176 ... A0A5B9BIX9 38501868
    893421 8xor:R (3.0) BS01 CLR N/A N/A P25116 38997424
    893422 8xor:R (3.0) BS02 CLR N/A N/A P25116 38997424
    893423 8xor:R (3.0) BS03 CLR N/A N/A P25116 38997424
    893424 8xor:R (3.0) BS04 CLR N/A N/A P25116 38997424
    893425 8xor:R (3.0) BS05 CLR N/A N/A P25116 38997424
    893426 8xor:R (3.0) BS06 CLR N/A N/A P25116 38997424
    893427 8xos:R (3.2) BS01 CLR N/A N/A P25116 38997424
    893428 8xos:R (3.2) BS02 CLR N/A N/A P25116 38997424
    893429 8xov:A (2.55) BS01 ANP 2.7.11.1 GO:0004672 ... Q15418 N/A
    893430 8xox:A (1.9) BS01 YAM 2.7.10.2 GO:0004672 ... Q14289 N/A
    893431 8xp0:M (4.0) BS01 peptide N/A N/A P0A1J9 N/A
    893432 8xp0:M (4.0) BS02 peptide N/A N/A P0A1J9 N/A
    893433 8xp0:S (4.0) BS01 peptide N/A N/A P0A1J9 N/A
    893434 8xp0:Y (4.0) BS01 peptide N/A N/A P0A1J9 N/A
    893435 8xp0:Y (4.0) BS02 peptide N/A N/A P0A1J9 N/A
    893436 8xp1:Z (4.4) BS01 peptide N/A N/A P0A1J9 N/A
    893437 8xp1:a (4.4) BS01 peptide N/A N/A P0A1J9 N/A
    893438 8xp1:b (4.4) BS01 peptide N/A N/A P0A1J9 N/A
    893439 8xp5:A (2.55) BS01 ZN ? GO:0000976 ... P04637
    Q07817    		 N/A
    893440 8xp5:B (2.55) BS01 ZN ? GO:0000976 ... P04637
    Q07817    		 N/A
    893441 8xph:A (2.2) BS01 CA N/A N/A N/A N/A
    893442 8xph:A (2.2) BS02 CA N/A N/A N/A N/A
    893443 8xph:B (2.2) BS01 CA N/A N/A N/A N/A
    893444 8xph:B (2.2) BS02 CA N/A N/A N/A N/A
    893445 8xpk:A (2.0) BS01 GLC N/A N/A N/A N/A
    893446 8xpk:A (2.0) BS02 BGC N/A N/A N/A N/A
    893447 8xpk:A (2.0) BS03 CA N/A N/A N/A N/A
    893448 8xpk:A (2.0) BS04 CA N/A N/A N/A N/A
    893449 8xpk:B (2.0) BS01 GLC N/A N/A N/A N/A
    893450 8xpk:B (2.0) BS02 BGC N/A N/A N/A N/A
    893451 8xpk:B (2.0) BS03 BGC N/A N/A N/A N/A
    893452 8xpk:B (2.0) BS04 CA N/A N/A N/A N/A
    893453 8xpk:B (2.0) BS05 CA N/A N/A N/A N/A
    893454 8xpn:A (2.1) BS01 ZN 3.4.19.12 GO:0004843 ... P40818 N/A
    893455 8xpn:B (2.1) BS01 ZN 3.4.19.12 GO:0004843 ... P40818 N/A
    893456 8xpn:C (2.1) BS01 ZN 3.4.19.12 GO:0004843 ... P40818 N/A
    893457 8xpt:A (3.35) BS01 SAH 2.1.1.-
    2.1.1.367    		 GO:0002039 ... Q9H9B1 N/A
    893458 8xpt:A (3.35) BS02 ZN 2.1.1.-
    2.1.1.367    		 GO:0002039 ... Q9H9B1 N/A
    893459 8xpt:A (3.35) BS03 ZN 2.1.1.-
    2.1.1.367    		 GO:0002039 ... Q9H9B1 N/A
    893460 8xpt:A (3.35) BS04 ZN 2.1.1.-
    2.1.1.367    		 GO:0002039 ... Q9H9B1 N/A
    893461 8xpt:A (3.35) BS05 ZN 2.1.1.-
    2.1.1.367    		 GO:0002039 ... Q9H9B1 N/A
    893462 8xpt:B (3.35) BS01 SAH 2.1.1.-
    2.1.1.367    		 GO:0002039 ... Q9H9B1 N/A
    893463 8xpt:B (3.35) BS02 ZN 2.1.1.-
    2.1.1.367    		 GO:0002039 ... Q9H9B1 N/A
    893464 8xpt:B (3.35) BS03 ZN 2.1.1.-
    2.1.1.367    		 GO:0002039 ... Q9H9B1 N/A
    893465 8xpt:B (3.35) BS04 ZN 2.1.1.-
    2.1.1.367    		 GO:0002039 ... Q9H9B1 N/A
    893466 8xpt:B (3.35) BS05 ZN 2.1.1.-
    2.1.1.367    		 GO:0002039 ... Q9H9B1 N/A
    893467 8xpt:C (3.35) BS01 SAH 2.1.1.-
    2.1.1.367    		 GO:0002039 ... Q9H9B1 N/A
    893468 8xpt:C (3.35) BS02 ZN 2.1.1.-
    2.1.1.367    		 GO:0002039 ... Q9H9B1 N/A
    893469 8xpt:C (3.35) BS03 ZN 2.1.1.-
    2.1.1.367    		 GO:0002039 ... Q9H9B1 N/A
    893470 8xpt:C (3.35) BS04 ZN 2.1.1.-
    2.1.1.367    		 GO:0002039 ... Q9H9B1 N/A
    893471 8xpt:C (3.35) BS05 ZN 2.1.1.-
    2.1.1.367    		 GO:0002039 ... Q9H9B1 N/A
    893472 8xpt:D (3.35) BS01 SAH 2.1.1.-
    2.1.1.367    		 GO:0002039 ... Q9H9B1 N/A
    893473 8xpt:D (3.35) BS02 ZN 2.1.1.-
    2.1.1.367    		 GO:0002039 ... Q9H9B1 N/A
    893474 8xpt:D (3.35) BS03 ZN 2.1.1.-
    2.1.1.367    		 GO:0002039 ... Q9H9B1 N/A
    893475 8xpt:D (3.35) BS04 ZN 2.1.1.-
    2.1.1.367    		 GO:0002039 ... Q9H9B1 N/A
    893476 8xpt:D (3.35) BS05 ZN 2.1.1.-
    2.1.1.367    		 GO:0002039 ... Q9H9B1 N/A
    893477 8xpu:B (3.3) BS01 VRW N/A GO:0002720 ... Q01650 38956038
    893478 8xpv:A (1.55) BS01 4Z5 2.7.10.1 GO:0004672 ... P29317 N/A
    893479 8xq7:A (3.15) BS01 CMP N/A GO:0005886 ... A3RL54 38957574
    893480 8xq7:B (3.15) BS01 CMP N/A GO:0005886 ... A3RL54 38957574
    893481 8xq8:A (3.35) BS01 CMP N/A GO:0005886 ... A3RL54 38957574
    893482 8xql:A (2.99) BS01 GOQ N/A N/A P63092 38776963
    893483 8xql:R (2.99) BS01 GOQ N/A GO:0001580 ... Q59310
    Q9NYV8    		 38776963
    893484 8xql:R (2.99) BS02 GOQ N/A GO:0001580 ... Q59310
    Q9NYV8    		 38776963
    893485 8xql:R (2.99) BS03 CLR N/A GO:0001580 ... Q59310
    Q9NYV8    		 38776963
    893486 8xqn:R (3.05) BS01 GOQ N/A GO:0001580 ... Q59310
    Q9NYV8    		 38776963
    893487 8xqn:R (3.05) BS02 CLR N/A GO:0001580 ... Q59310
    Q9NYV8    		 38776963
    893488 8xqo:R (2.77) BS01 GOQ N/A GO:0001580 ... Q59310
    Q9NYV8    		 38776963
    893489 8xqo:R (2.77) BS02 CLR N/A GO:0001580 ... Q59310
    Q9NYV8    		 38776963
    893490 8xqp:R (3.29) BS01 GOQ N/A GO:0001580 ... Q59310
    Q9NYV8    		 38776963
    893491 8xqp:R (3.29) BS02 CLR N/A GO:0001580 ... Q59310
    Q9NYV8    		 38776963
    893492 8xqr:R (3.2) BS01 FLF N/A GO:0001580 ... Q59310
    Q9NYV8    		 38776963
    893493 8xqs:R (3.3) BS01 FLF N/A GO:0001580 ... Q59310
    Q9NYV8    		 38776963
    893494 8xqs:R (3.3) BS02 CLR N/A GO:0001580 ... Q59310
    Q9NYV8    		 38776963
    893495 8xqt:R (2.94) BS01 CLR N/A GO:0001580 ... Q59310
    Q9NYV8    		 38776963
    893496 8xqt:R (2.94) BS02 CLR N/A GO:0001580 ... Q59310
    Q9NYV8    		 38776963
    893497 8xqw:A (2.9) BS01 ANP N/A N/A N/A 39197449
    893498 8xqw:C (2.9) BS01 ANP N/A N/A N/A 39197449
    893499 8xqw:D (2.9) BS01 A1LXL N/A N/A A0A218N8A7 39197449
    893500 8xqw:E (2.9) BS01 ANP N/A N/A N/A 39197449
    893501 8xqw:F (2.9) BS01 ANP N/A N/A N/A 39197449
    893502 8xqw:F (2.9) BS02 ANP N/A N/A N/A 39197449
    893503 8xqw:I (2.9) BS01 Y01 N/A N/A N/A 39197449
    893504 8xqw:M (2.9) BS01 Y01 N/A N/A A0A2K3DQ46 39197449
    893505 8xqw:P (2.9) BS01 A1LXL N/A N/A A0A2K3DHV6 39197449
    893506 8xqw:P (2.9) BS02 A1LXL N/A N/A A0A2K3DHV6 39197449
    893507 8xqw:R (2.9) BS01 ZN N/A N/A A0A2K3DGW6 39197449
    893508 8xqw:R (2.9) BS02 ZN N/A N/A A0A2K3DGW6 39197449
    893509 8xqx:I (2.8) BS01 Y01 N/A N/A N/A 39197449
    893510 8xqx:M (2.8) BS01 Y01 N/A N/A A0A2K3DQ46 39197449
    893511 8xqx:P (2.8) BS01 A1LXL N/A N/A A0A2K3DHV6 39197449
    893512 8xqx:P (2.8) BS02 A1LXL N/A N/A A0A2K3DHV6 39197449
    893513 8xqx:R (2.8) BS01 ZN N/A N/A A0A2K3DGW6 39197449
    893514 8xqx:R (2.8) BS02 ZN N/A N/A A0A2K3DGW6 39197449
    893515 8xr4:A (1.94) BS01 NAP ? GO:0000166 ... A0A3R7J519 38459030
    893516 8xr4:B (1.94) BS01 NAP ? GO:0000166 ... A0A3R7J519 38459030
    893517 8xr4:C (1.94) BS01 NAP ? GO:0000166 ... A0A3R7J519 38459030
    893518 8xr4:D (1.94) BS01 NAP ? GO:0000166 ... A0A3R7J519 38459030
    893519 8xr4:E (1.94) BS01 NAP ? GO:0000166 ... A0A3R7J519 38459030
    893520 8xr4:F (1.94) BS01 NAP ? GO:0000166 ... A0A3R7J519 38459030
    893521 8xr4:G (1.94) BS01 NAP ? GO:0000166 ... A0A3R7J519 38459030
    893522 8xr4:H (1.94) BS01 NAP ? GO:0000166 ... A0A3R7J519 38459030
    893523 8xr6:0 (2.53) BS01 CLA N/A N/A N/A N/A
    893524 8xr6:0 (2.53) BS02 CLA N/A N/A N/A N/A
    893525 8xr6:0 (2.53) BS03 CLA N/A N/A N/A N/A
    893526 8xr6:0 (2.53) BS04 CLA N/A N/A N/A N/A
    893527 8xr6:0 (2.53) BS05 KC2 N/A N/A N/A N/A
    893528 8xr6:0 (2.53) BS06 CLA N/A N/A N/A N/A
    893529 8xr6:0 (2.53) BS07 CLA N/A N/A N/A N/A
    893530 8xr6:0 (2.53) BS08 CLA N/A N/A N/A N/A
    893531 8xr6:0 (2.53) BS09 CLA N/A N/A N/A N/A
    893532 8xr6:0 (2.53) BS10 CLA N/A N/A N/A N/A
    893533 8xr6:0 (2.53) BS11 CLA N/A N/A N/A N/A
    893534 8xr6:0 (2.53) BS12 8CT N/A N/A N/A N/A
    893535 8xr6:0 (2.53) BS13 II0 N/A N/A N/A N/A
    893536 8xr6:0 (2.53) BS14 II0 N/A N/A N/A N/A
    893537 8xr6:0 (2.53) BS15 II0 N/A N/A N/A N/A
    893538 8xr6:0 (2.53) BS16 II0 N/A N/A N/A N/A
    893539 8xr6:0 (2.53) BS17 CLA N/A N/A N/A N/A
    893540 8xr6:1 (2.53) BS01 CLA N/A N/A N/A N/A
    893541 8xr6:1 (2.53) BS02 CLA N/A N/A N/A N/A
    893542 8xr6:1 (2.53) BS03 CLA N/A N/A N/A N/A
    893543 8xr6:1 (2.53) BS04 CLA N/A N/A N/A N/A
    893544 8xr6:1 (2.53) BS05 CLA N/A N/A N/A N/A
    893545 8xr6:1 (2.53) BS06 CLA N/A N/A N/A N/A
    893546 8xr6:1 (2.53) BS07 CLA N/A N/A N/A N/A
    893547 8xr6:1 (2.53) BS08 CLA N/A N/A N/A N/A
    893548 8xr6:1 (2.53) BS09 CLA N/A N/A N/A N/A
    893549 8xr6:1 (2.53) BS10 KC2 N/A N/A N/A N/A
    893550 8xr6:1 (2.53) BS11 KC2 N/A N/A N/A N/A
    893551 8xr6:1 (2.53) BS12 8CT N/A N/A N/A N/A
    893552 8xr6:1 (2.53) BS13 II0 N/A N/A N/A N/A
    893553 8xr6:1 (2.53) BS14 II0 N/A N/A N/A N/A
    893554 8xr6:1 (2.53) BS15 II0 N/A N/A N/A N/A
    893555 8xr6:1 (2.53) BS16 II0 N/A N/A N/A N/A
    893556 8xr6:1 (2.53) BS17 CLA N/A N/A N/A N/A
    893557 8xr6:2 (2.53) BS01 CLA N/A N/A N/A N/A
    893558 8xr6:2 (2.53) BS02 CLA N/A N/A N/A N/A
    893559 8xr6:2 (2.53) BS03 8CT N/A N/A N/A N/A
    893560 8xr6:2 (2.53) BS04 II0 N/A N/A N/A N/A
    893561 8xr6:2 (2.53) BS05 CLA N/A N/A N/A N/A
    893562 8xr6:2 (2.53) BS06 CLA N/A N/A N/A N/A
    893563 8xr6:2 (2.53) BS07 CLA N/A N/A N/A N/A
    893564 8xr6:2 (2.53) BS08 CLA N/A N/A N/A N/A
    893565 8xr6:2 (2.53) BS09 CLA N/A N/A N/A N/A
    893566 8xr6:2 (2.53) BS10 CLA N/A N/A N/A N/A
    893567 8xr6:2 (2.53) BS11 CLA N/A N/A N/A N/A
    893568 8xr6:2 (2.53) BS12 CLA N/A N/A N/A N/A
    893569 8xr6:2 (2.53) BS13 KC2 N/A N/A N/A N/A
    893570 8xr6:2 (2.53) BS14 CLA N/A N/A N/A N/A
    893571 8xr6:2 (2.53) BS15 II0 N/A N/A N/A N/A
    893572 8xr6:2 (2.53) BS16 II0 N/A N/A N/A N/A
    893573 8xr6:2 (2.53) BS17 II0 N/A N/A N/A N/A
    893574 8xr6:2 (2.53) BS18 IHT N/A N/A N/A N/A
    893575 8xr6:2 (2.53) BS19 II0 N/A N/A N/A N/A
    893576 8xr6:2 (2.53) BS20 CLA N/A N/A N/A N/A
    893577 8xr6:2 (2.53) BS21 CLA N/A N/A N/A N/A
    893578 8xr6:2 (2.53) BS22 II0 N/A N/A N/A N/A
    893579 8xr6:2 (2.53) BS23 CLA N/A N/A N/A N/A
    893580 8xr6:2 (2.53) BS24 CLA N/A N/A N/A N/A
    893581 8xr6:2 (2.53) BS25 CLA N/A N/A N/A N/A
    893582 8xr6:3 (2.53) BS01 CLA N/A N/A N/A N/A
    893583 8xr6:3 (2.53) BS02 IHT N/A N/A N/A N/A
    893584 8xr6:3 (2.53) BS03 II0 N/A N/A N/A N/A
    893585 8xr6:3 (2.53) BS04 CLA N/A N/A N/A N/A
    893586 8xr6:3 (2.53) BS05 CLA N/A N/A N/A N/A
    893587 8xr6:3 (2.53) BS06 CLA N/A N/A N/A N/A
    893588 8xr6:3 (2.53) BS07 CLA N/A N/A N/A N/A
    893589 8xr6:3 (2.53) BS08 CLA N/A N/A N/A N/A
    893590 8xr6:3 (2.53) BS09 CLA N/A N/A N/A N/A
    893591 8xr6:3 (2.53) BS10 CLA N/A N/A N/A N/A
    893592 8xr6:3 (2.53) BS11 CLA N/A N/A N/A N/A
    893593 8xr6:3 (2.53) BS12 KC2 N/A N/A N/A N/A
    893594 8xr6:3 (2.53) BS13 CLA N/A N/A N/A N/A
    893595 8xr6:3 (2.53) BS14 CLA N/A N/A N/A N/A
    893596 8xr6:3 (2.53) BS15 CLA N/A N/A N/A N/A
    893597 8xr6:3 (2.53) BS16 CLA N/A N/A N/A N/A
    893598 8xr6:3 (2.53) BS17 II0 N/A N/A N/A N/A
    893599 8xr6:3 (2.53) BS18 II0 N/A N/A N/A N/A
    893600 8xr6:3 (2.53) BS19 II0 N/A N/A N/A N/A
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023)(download the PDF file).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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