Home Research COVID-19 Services Publications People Teaching Job Opening News Forum --> -->
Online Services

●I-TASSER ●I-TASSER-MTD ●C-I-TASSER ●CR-I-TASSER ●QUARK ●C-QUARK ●LOMETS ●MUSTER ●CEthreader ●SEGMER ●DeepFold ●DeepFoldRNA ●FoldDesign ●COFACTOR ●COACH ●MetaGO ●TripletGO ●IonCom ●FG-MD ●ModRefiner ●REMO ●DEMO ●DEMO-EM ●DMFold ●SPRING ●COTH ●Threpp ●PEPPI ●BSpred ●ANGLOR ●EDock ●BSP-SLIM ●SAXSTER ●FUpred ●ThreaDom ●ThreaDomEx ●EvoDesign ●BindProf ●BindProfX ●SSIPe ●GPCR-I-TASSER ●MAGELLAN ●ResQ ●STRUM ●DAMpred

●TM-score ●TM-align ●US-align ●MM-align ●RNA-align ●NW-align ●LS-align ●EDTSurf ●MVP ●MVP-Fit ●SPICKER ●HAAD ●PSSpred ●3DRobot ●MR-REX ●I-TASSER-MR ●SVMSEQ ●NeBcon ●ResPRE ●TripletRes ●DeepPotential ●WDL-RF ●ATPbind ●DockRMSD ●DeepMSA ●FASPR ●EM-Refiner ●GPU-I-TASSER

●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
Download all results in tab-seperated text for 903398 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

    • Sort results by
    << < 4454 4455 4456 4457 4458 4459 4460 4461 4462 4463 4464 4465 4466 4467 4468 4469 4470 4471 4472 4473 4474 > >>
    Go to page

    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    892601 8xjv:al (3.6) BS02 dna N/A N/A Q6AZJ8 39103524
    892602 8xjv:am (3.6) BS01 dna N/A N/A Q6AZJ8 39103524
    892603 8xjv:am (3.6) BS02 dna N/A N/A Q6AZJ8 39103524
    892604 8xjv:an (3.6) BS01 dna N/A N/A Q6AZJ8 39103524
    892605 8xjv:an (3.6) BS02 dna N/A N/A Q6AZJ8 39103524
    892606 8xjv:ao (3.6) BS01 dna N/A N/A Q6AZJ8 39103524
    892607 8xjv:ao (3.6) BS02 dna N/A N/A Q6AZJ8 39103524
    892608 8xjv:ap (3.6) BS01 dna N/A N/A Q6AZJ8 39103524
    892609 8xjv:ap (3.6) BS02 dna N/A N/A Q6AZJ8 39103524
    892610 8xjv:aq (3.6) BS01 dna N/A N/A Q6AZJ8 39103524
    892611 8xjv:aq (3.6) BS02 dna N/A N/A Q6AZJ8 39103524
    892612 8xjv:ar (3.6) BS01 dna N/A N/A Q6AZJ8 39103524
    892613 8xjv:ar (3.6) BS02 dna N/A N/A Q6AZJ8 39103524
    892614 8xjv:as (3.6) BS01 dna N/A N/A Q6AZJ8 39103524
    892615 8xjv:as (3.6) BS02 dna N/A N/A Q6AZJ8 39103524
    892616 8xjv:at (3.6) BS01 dna N/A N/A Q6AZJ8 39103524
    892617 8xjv:at (3.6) BS02 dna N/A N/A Q6AZJ8 39103524
    892618 8xjv:au (3.6) BS01 dna N/A N/A Q6AZJ8 39103524
    892619 8xjv:au (3.6) BS02 dna N/A N/A Q6AZJ8 39103524
    892620 8xjv:av (3.6) BS01 dna N/A N/A P02281 39103524
    892621 8xjv:av (3.6) BS02 dna N/A N/A P02281 39103524
    892622 8xjv:aw (3.6) BS01 dna N/A N/A P02281 39103524
    892623 8xjv:aw (3.6) BS02 dna N/A N/A P02281 39103524
    892624 8xjv:ax (3.6) BS01 dna N/A N/A P02281 39103524
    892625 8xjv:ax (3.6) BS02 dna N/A N/A P02281 39103524
    892626 8xjv:ay (3.6) BS01 dna N/A N/A P02281 39103524
    892627 8xjv:ay (3.6) BS02 dna N/A N/A P02281 39103524
    892628 8xjv:az (3.6) BS01 dna N/A N/A P02281 39103524
    892629 8xjv:az (3.6) BS02 dna N/A N/A P02281 39103524
    892630 8xjv:b (3.6) BS01 dna N/A N/A A0A310TTQ1 39103524
    892631 8xjv:b (3.6) BS02 dna N/A N/A A0A310TTQ1 39103524
    892632 8xjv:c (3.6) BS01 dna N/A N/A A0A310TTQ1 39103524
    892633 8xjv:c (3.6) BS02 dna N/A N/A A0A310TTQ1 39103524
    892634 8xjv:d (3.6) BS01 dna N/A N/A A0A310TTQ1 39103524
    892635 8xjv:d (3.6) BS02 dna N/A N/A A0A310TTQ1 39103524
    892636 8xjv:e (3.6) BS01 dna N/A N/A A0A310TTQ1 39103524
    892637 8xjv:e (3.6) BS02 dna N/A N/A A0A310TTQ1 39103524
    892638 8xjv:f (3.6) BS01 dna N/A N/A A0A310TTQ1 39103524
    892639 8xjv:f (3.6) BS02 dna N/A N/A A0A310TTQ1 39103524
    892640 8xjv:g (3.6) BS01 dna N/A N/A A0A310TTQ1 39103524
    892641 8xjv:g (3.6) BS02 dna N/A N/A A0A310TTQ1 39103524
    892642 8xjv:h (3.6) BS01 dna N/A N/A A0A310TTQ1 39103524
    892643 8xjv:h (3.6) BS02 dna N/A N/A A0A310TTQ1 39103524
    892644 8xjv:i (3.6) BS01 dna N/A N/A A0A310TTQ1 39103524
    892645 8xjv:i (3.6) BS02 dna N/A N/A A0A310TTQ1 39103524
    892646 8xjv:j (3.6) BS01 dna N/A N/A A0A310TTQ1 39103524
    892647 8xjv:j (3.6) BS02 dna N/A N/A A0A310TTQ1 39103524
    892648 8xjv:k (3.6) BS01 dna N/A N/A A0A310TTQ1 39103524
    892649 8xjv:k (3.6) BS02 dna N/A N/A A0A310TTQ1 39103524
    892650 8xjv:l (3.6) BS01 dna N/A N/A A0A310TTQ1 39103524
    892651 8xjv:l (3.6) BS02 dna N/A N/A A0A310TTQ1 39103524
    892652 8xjv:m (3.6) BS01 dna N/A N/A A0A310TTQ1 39103524
    892653 8xjv:m (3.6) BS02 dna N/A N/A A0A310TTQ1 39103524
    892654 8xjv:n (3.6) BS01 dna N/A N/A A0A310TTQ1 39103524
    892655 8xjv:n (3.6) BS02 dna N/A N/A A0A310TTQ1 39103524
    892656 8xjv:o (3.6) BS01 dna N/A N/A A0A310TTQ1 39103524
    892657 8xjv:o (3.6) BS02 dna N/A N/A A0A310TTQ1 39103524
    892658 8xjv:p (3.6) BS01 dna N/A N/A A0A310TTQ1 39103524
    892659 8xjv:p (3.6) BS02 dna N/A N/A A0A310TTQ1 39103524
    892660 8xjv:q (3.6) BS01 dna N/A N/A A0A310TTQ1 39103524
    892661 8xjv:q (3.6) BS02 dna N/A N/A A0A310TTQ1 39103524
    892662 8xjv:r (3.6) BS01 dna N/A N/A A0A310TTQ1 39103524
    892663 8xjv:r (3.6) BS02 dna N/A N/A A0A310TTQ1 39103524
    892664 8xjv:s (3.6) BS01 dna N/A N/A A0A310TTQ1 39103524
    892665 8xjv:s (3.6) BS02 dna N/A N/A A0A310TTQ1 39103524
    892666 8xjv:t (3.6) BS01 dna N/A N/A A0A310TTQ1 39103524
    892667 8xjv:t (3.6) BS02 dna N/A N/A A0A310TTQ1 39103524
    892668 8xjv:u (3.6) BS01 dna N/A N/A A0A310TTQ1 39103524
    892669 8xjv:u (3.6) BS02 dna N/A N/A A0A310TTQ1 39103524
    892670 8xjv:v (3.6) BS01 dna N/A N/A P62799 39103524
    892671 8xjv:v (3.6) BS02 dna N/A N/A P62799 39103524
    892672 8xjv:w (3.6) BS01 dna N/A N/A P62799 39103524
    892673 8xjv:w (3.6) BS02 dna N/A N/A P62799 39103524
    892674 8xjv:x (3.6) BS01 dna N/A N/A P62799 39103524
    892675 8xjv:x (3.6) BS02 dna N/A N/A P62799 39103524
    892676 8xjv:y (3.6) BS01 dna N/A N/A P62799 39103524
    892677 8xjv:y (3.6) BS02 dna N/A N/A P62799 39103524
    892678 8xjv:z (3.6) BS01 dna N/A N/A P62799 39103524
    892679 8xkc:A (2.18) BS01 peptide N/A N/A A0A0G2JPD3 38885041
    892680 8xke:A (1.92) BS01 peptide N/A N/A A0A0G2JL56 38885041
    892681 8xkf:A (2.5) BS01 CTP 2.7.7.60
    4.6.1.12    		 GO:0003824 ... O25664 38537721
    892682 8xkf:A (2.5) BS02 ZN 2.7.7.60
    4.6.1.12    		 GO:0003824 ... O25664 38537721
    892683 8xkf:A (2.5) BS03 CDP 2.7.7.60
    4.6.1.12    		 GO:0003824 ... O25664 38537721
    892684 8xkf:B (2.5) BS01 CTP 2.7.7.60
    4.6.1.12    		 GO:0003824 ... O25664 38537721
    892685 8xkf:B (2.5) BS02 C5P 2.7.7.60
    4.6.1.12    		 GO:0003824 ... O25664 38537721
    892686 8xkf:C (2.5) BS01 C5P 2.7.7.60
    4.6.1.12    		 GO:0003824 ... O25664 38537721
    892687 8xkf:C (2.5) BS02 CTP 2.7.7.60
    4.6.1.12    		 GO:0003824 ... O25664 38537721
    892688 8xkf:C (2.5) BS03 CDP 2.7.7.60
    4.6.1.12    		 GO:0003824 ... O25664 38537721
    892689 8xkf:D (2.5) BS01 CTP 2.7.7.60
    4.6.1.12    		 GO:0003824 ... O25664 38537721
    892690 8xkf:D (2.5) BS02 C5P 2.7.7.60
    4.6.1.12    		 GO:0003824 ... O25664 38537721
    892691 8xkf:D (2.5) BS03 ZN 2.7.7.60
    4.6.1.12    		 GO:0003824 ... O25664 38537721
    892692 8xkf:D (2.5) BS04 CDP 2.7.7.60
    4.6.1.12    		 GO:0003824 ... O25664 38537721
    892693 8xkf:E (2.5) BS01 CTP 2.7.7.60
    4.6.1.12    		 GO:0003824 ... O25664 38537721
    892694 8xkf:E (2.5) BS02 CDP 2.7.7.60
    4.6.1.12    		 GO:0003824 ... O25664 38537721
    892695 8xkf:E (2.5) BS03 C5P 2.7.7.60
    4.6.1.12    		 GO:0003824 ... O25664 38537721
    892696 8xkf:F (2.5) BS01 C5P 2.7.7.60
    4.6.1.12    		 GO:0003824 ... O25664 38537721
    892697 8xkf:F (2.5) BS02 CTP 2.7.7.60
    4.6.1.12    		 GO:0003824 ... O25664 38537721
    892698 8xkf:F (2.5) BS03 C5P 2.7.7.60
    4.6.1.12    		 GO:0003824 ... O25664 38537721
    892699 8xkl:0 (2.84) BS01 CLA N/A N/A N/A 38806516
    892700 8xkl:0 (2.84) BS02 CLA N/A N/A N/A 38806516
    892701 8xkl:0 (2.84) BS03 CLA N/A N/A N/A 38806516
    892702 8xkl:0 (2.84) BS04 CLA N/A N/A N/A 38806516
    892703 8xkl:0 (2.84) BS05 CLA N/A N/A N/A 38806516
    892704 8xkl:0 (2.84) BS06 CLA N/A N/A N/A 38806516
    892705 8xkl:0 (2.84) BS07 CLA N/A N/A N/A 38806516
    892706 8xkl:0 (2.84) BS08 CLA N/A N/A N/A 38806516
    892707 8xkl:0 (2.84) BS09 CLA N/A N/A N/A 38806516
    892708 8xkl:0 (2.84) BS10 KC2 N/A N/A N/A 38806516
    892709 8xkl:0 (2.84) BS11 CLA N/A N/A N/A 38806516
    892710 8xkl:0 (2.84) BS12 CLA N/A N/A N/A 38806516
    892711 8xkl:0 (2.84) BS13 CLA N/A N/A N/A 38806516
    892712 8xkl:0 (2.84) BS14 IHT N/A N/A N/A 38806516
    892713 8xkl:0 (2.84) BS15 II0 N/A N/A N/A 38806516
    892714 8xkl:0 (2.84) BS16 II0 N/A N/A N/A 38806516
    892715 8xkl:0 (2.84) BS17 IHT N/A N/A N/A 38806516
    892716 8xkl:0 (2.84) BS18 II0 N/A N/A N/A 38806516
    892717 8xkl:0 (2.84) BS19 II0 N/A N/A N/A 38806516
    892718 8xkl:0 (2.84) BS20 CLA N/A N/A N/A 38806516
    892719 8xkl:7 (2.84) BS01 CLA N/A N/A N/A 38806516
    892720 8xkl:7 (2.84) BS02 CLA N/A N/A N/A 38806516
    892721 8xkl:7 (2.84) BS03 CLA N/A N/A N/A 38806516
    892722 8xkl:7 (2.84) BS04 CLA N/A N/A N/A 38806516
    892723 8xkl:7 (2.84) BS05 CLA N/A N/A N/A 38806516
    892724 8xkl:7 (2.84) BS06 CLA N/A N/A N/A 38806516
    892725 8xkl:7 (2.84) BS07 CLA N/A N/A N/A 38806516
    892726 8xkl:7 (2.84) BS08 CLA N/A N/A N/A 38806516
    892727 8xkl:7 (2.84) BS09 CLA N/A N/A N/A 38806516
    892728 8xkl:7 (2.84) BS10 KC2 N/A N/A N/A 38806516
    892729 8xkl:7 (2.84) BS11 CLA N/A N/A N/A 38806516
    892730 8xkl:7 (2.84) BS12 CLA N/A N/A N/A 38806516
    892731 8xkl:7 (2.84) BS13 CLA N/A N/A N/A 38806516
    892732 8xkl:7 (2.84) BS14 II0 N/A N/A N/A 38806516
    892733 8xkl:7 (2.84) BS15 II3 N/A N/A N/A 38806516
    892734 8xkl:7 (2.84) BS16 II0 N/A N/A N/A 38806516
    892735 8xkl:7 (2.84) BS17 II0 N/A N/A N/A 38806516
    892736 8xkl:7 (2.84) BS18 IHT N/A N/A N/A 38806516
    892737 8xkl:7 (2.84) BS19 II0 N/A N/A N/A 38806516
    892738 8xkl:8 (2.84) BS01 CLA N/A N/A N/A 38806516
    892739 8xkl:8 (2.84) BS02 II0 N/A N/A N/A 38806516
    892740 8xkl:8 (2.84) BS03 CLA N/A N/A N/A 38806516
    892741 8xkl:8 (2.84) BS04 CLA N/A N/A N/A 38806516
    892742 8xkl:8 (2.84) BS05 CLA N/A N/A N/A 38806516
    892743 8xkl:8 (2.84) BS06 CLA N/A N/A N/A 38806516
    892744 8xkl:8 (2.84) BS07 CLA N/A N/A N/A 38806516
    892745 8xkl:8 (2.84) BS08 CLA N/A N/A N/A 38806516
    892746 8xkl:8 (2.84) BS09 CLA N/A N/A N/A 38806516
    892747 8xkl:8 (2.84) BS10 CLA N/A N/A N/A 38806516
    892748 8xkl:8 (2.84) BS11 KC2 N/A N/A N/A 38806516
    892749 8xkl:8 (2.84) BS12 CLA N/A N/A N/A 38806516
    892750 8xkl:8 (2.84) BS13 CLA N/A N/A N/A 38806516
    892751 8xkl:8 (2.84) BS14 II0 N/A N/A N/A 38806516
    892752 8xkl:8 (2.84) BS15 II0 N/A N/A N/A 38806516
    892753 8xkl:8 (2.84) BS16 II0 N/A N/A N/A 38806516
    892754 8xkl:8 (2.84) BS17 IHT N/A N/A N/A 38806516
    892755 8xkl:8 (2.84) BS18 II0 N/A N/A N/A 38806516
    892756 8xkl:8 (2.84) BS19 CLA N/A N/A N/A 38806516
    892757 8xkl:9 (2.84) BS01 CLA N/A N/A N/A 38806516
    892758 8xkl:9 (2.84) BS02 II0 N/A N/A N/A 38806516
    892759 8xkl:9 (2.84) BS03 CLA N/A N/A N/A 38806516
    892760 8xkl:9 (2.84) BS04 CLA N/A N/A N/A 38806516
    892761 8xkl:9 (2.84) BS05 CLA N/A N/A N/A 38806516
    892762 8xkl:9 (2.84) BS06 CLA N/A N/A N/A 38806516
    892763 8xkl:9 (2.84) BS07 CLA N/A N/A N/A 38806516
    892764 8xkl:9 (2.84) BS08 CLA N/A N/A N/A 38806516
    892765 8xkl:9 (2.84) BS09 CLA N/A N/A N/A 38806516
    892766 8xkl:9 (2.84) BS10 CLA N/A N/A N/A 38806516
    892767 8xkl:9 (2.84) BS11 CLA N/A N/A N/A 38806516
    892768 8xkl:9 (2.84) BS12 CLA N/A N/A N/A 38806516
    892769 8xkl:9 (2.84) BS13 II0 N/A N/A N/A 38806516
    892770 8xkl:9 (2.84) BS14 II0 N/A N/A N/A 38806516
    892771 8xkl:9 (2.84) BS15 II0 N/A N/A N/A 38806516
    892772 8xkl:9 (2.84) BS16 8CT N/A N/A N/A 38806516
    892773 8xkl:G (2.84) BS01 CLA N/A N/A N/A 38806516
    892774 8xkl:P (2.84) BS01 CLA N/A N/A N/A 38806516
    892775 8xkl:P (2.84) BS02 CLA N/A N/A N/A 38806516
    892776 8xkl:P (2.84) BS03 CLA N/A N/A N/A 38806516
    892777 8xkl:P (2.84) BS04 CLA N/A N/A N/A 38806516
    892778 8xkl:P (2.84) BS05 KC2 N/A N/A N/A 38806516
    892779 8xkl:P (2.84) BS06 CLA N/A N/A N/A 38806516
    892780 8xkl:P (2.84) BS07 CLA N/A N/A N/A 38806516
    892781 8xkl:P (2.84) BS08 CLA N/A N/A N/A 38806516
    892782 8xkl:P (2.84) BS09 KC2 N/A N/A N/A 38806516
    892783 8xkl:P (2.84) BS10 CLA N/A N/A N/A 38806516
    892784 8xkl:P (2.84) BS11 II0 N/A N/A N/A 38806516
    892785 8xkl:P (2.84) BS12 II3 N/A N/A N/A 38806516
    892786 8xkl:P (2.84) BS13 II0 N/A N/A N/A 38806516
    892787 8xkl:P (2.84) BS14 8CT N/A N/A N/A 38806516
    892788 8xkl:P (2.84) BS15 II0 N/A N/A N/A 38806516
    892789 8xkl:p (2.84) BS01 CLA N/A N/A N/A 38806516
    892790 8xkl:p (2.84) BS02 II0 N/A N/A N/A 38806516
    892791 8xkl:p (2.84) BS03 CLA N/A N/A N/A 38806516
    892792 8xkl:p (2.84) BS04 II0 N/A N/A N/A 38806516
    892793 8xkl:p (2.84) BS05 CLA N/A N/A N/A 38806516
    892794 8xkl:p (2.84) BS06 CLA N/A N/A N/A 38806516
    892795 8xkl:p (2.84) BS07 CLA N/A N/A N/A 38806516
    892796 8xkl:p (2.84) BS08 CLA N/A N/A N/A 38806516
    892797 8xkl:p (2.84) BS09 CLA N/A N/A N/A 38806516
    892798 8xkl:p (2.84) BS10 CLA N/A N/A N/A 38806516
    892799 8xkl:p (2.84) BS11 CLA N/A N/A N/A 38806516
    892800 8xkl:p (2.84) BS12 CLA N/A N/A N/A 38806516
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

    • yangzhanglabumich.edu | (734) 647-1549 | 100 Washtenaw Avenue, Ann Arbor, MI 48109-2218