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●TM-score ●TM-align ●US-align ●MM-align ●RNA-align ●NW-align ●LS-align ●EDTSurf ●MVP ●MVP-Fit ●SPICKER ●HAAD ●PSSpred ●3DRobot ●MR-REX ●I-TASSER-MR ●SVMSEQ ●NeBcon ●ResPRE ●TripletRes ●DeepPotential ●WDL-RF ●ATPbind ●DockRMSD ●DeepMSA ●FASPR ●EM-Refiner ●GPU-I-TASSER

●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
Download all results in tab-seperated text for 903398 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    892401 8xi5:O (3.4) BS01 CA N/A N/A P98155 39127734
    892402 8xi5:P (3.4) BS01 CA N/A N/A P98155 39127734
    892403 8xi5:Q (3.4) BS01 CA N/A N/A P98155 39127734
    892404 8xi5:R (3.4) BS01 CA N/A N/A P98155 39127734
    892405 8xi5:S (3.4) BS01 CA N/A N/A P98155 39127734
    892406 8xi5:T (3.4) BS01 CA N/A N/A P98155 39127734
    892407 8xi9:A (1.85) BS01 RAP N/A N/A P42345
    P62942    		 39031920
    892408 8xia:A (1.9) BS01 XLS 5.3.1.5 GO:0000287 ... P24300 2734296
    892409 8xia:A (1.9) BS02 MN 5.3.1.5 GO:0000287 ... P24300 2734296
    892410 8xia:A (1.9) BS03 MN 5.3.1.5 GO:0000287 ... P24300 2734296
    892411 8xif:A (1.39) BS01 MG 3.6.4.- N/A P04305 38914567
    892412 8xif:A (1.39) BS02 MG 3.6.4.- N/A P04305 38914567
    892413 8xig:A (1.65) BS01 MG 3.6.4.- N/A A0A7H0DN89 38914567
    892414 8xig:A (1.65) BS02 MG 3.6.4.- N/A A0A7H0DN89 38914567
    892415 8xim:A (2.4) BS01 XLS 5.3.1.5 GO:0000287 ... P12851 1610791
    892416 8xim:A (2.4) BS02 MG 5.3.1.5 GO:0000287 ... P12851 1610791
    892417 8xim:B (2.4) BS01 XLS 5.3.1.5 GO:0000287 ... P12851 1610791
    892418 8xim:B (2.4) BS02 MG 5.3.1.5 GO:0000287 ... P12851 1610791
    892419 8xim:C (2.4) BS01 XLS 5.3.1.5 GO:0000287 ... P12851 1610791
    892420 8xim:C (2.4) BS02 MG 5.3.1.5 GO:0000287 ... P12851 1610791
    892421 8xim:D (2.4) BS01 XLS 5.3.1.5 GO:0000287 ... P12851 1610791
    892422 8xim:D (2.4) BS02 MG 5.3.1.5 GO:0000287 ... P12851 1610791
    892423 8xio:A (2.65) BS01 A1D5D N/A GO:0004930 ... P30872 N/A
    892424 8xip:A (3.29) BS01 peptide N/A GO:0004930 ... P30872 N/A
    892425 8xiq:A (2.71) BS01 peptide N/A N/A P32745 N/A
    892426 8xir:A (2.52) BS01 peptide N/A GO:0004930 ... P32745 N/A
    892427 8xiy:A (2.09) BS01 PLP ? GO:0003824 ... Q0C8G1 N/A
    892428 8xiy:B (2.09) BS01 PLP ? GO:0003824 ... Q0C8G1 N/A
    892429 8xj6:A (3.32) BS01 ANP ? GO:0004386 ... A0A7H0DN89 38914567
    892430 8xj6:B (3.32) BS01 AN2 ? GO:0004386 ... A0A7H0DN89 38914567
    892431 8xj6:C (3.32) BS01 ANP ? GO:0004386 ... A0A7H0DN89 38914567
    892432 8xj6:D (3.32) BS01 ANP ? GO:0004386 ... A0A7H0DN89 38914567
    892433 8xj6:E (3.32) BS01 AN2 ? GO:0004386 ... A0A7H0DN89 38914567
    892434 8xj6:E (3.32) BS02 ZN ? GO:0004386 ... A0A7H0DN89 38914567
    892435 8xj6:F (3.32) BS01 AN2 ? GO:0004386 ... A0A7H0DN89 38914567
    892436 8xj6:F (3.32) BS02 ZN ? GO:0004386 ... A0A7H0DN89 38914567
    892437 8xj7:A (2.74) BS01 ANP ? GO:0004386 ... A0A7H0DN89 38914567
    892438 8xj7:B (2.74) BS01 dna ? GO:0004386 ... A0A7H0DN89 38914567
    892439 8xj7:B (2.74) BS02 ANP ? GO:0004386 ... A0A7H0DN89 38914567
    892440 8xj7:B (2.74) BS03 ANP ? GO:0004386 ... A0A7H0DN89 38914567
    892441 8xj7:C (2.74) BS01 dna ? GO:0004386 ... A0A7H0DN89 38914567
    892442 8xj7:C (2.74) BS02 ANP ? GO:0004386 ... A0A7H0DN89 38914567
    892443 8xj7:C (2.74) BS03 ANP ? GO:0004386 ... A0A7H0DN89 38914567
    892444 8xj7:D (2.74) BS01 dna ? GO:0004386 ... A0A7H0DN89 38914567
    892445 8xj7:D (2.74) BS02 ANP ? GO:0004386 ... A0A7H0DN89 38914567
    892446 8xj7:D (2.74) BS03 ANP ? GO:0004386 ... A0A7H0DN89 38914567
    892447 8xj7:E (2.74) BS01 ANP ? GO:0004386 ... A0A7H0DN89 38914567
    892448 8xj7:E (2.74) BS02 ANP ? GO:0004386 ... A0A7H0DN89 38914567
    892449 8xj7:F (2.74) BS01 ANP ? GO:0004386 ... A0A7H0DN89 38914567
    892450 8xj8:A (2.67) BS01 dna 3.6.4.- N/A A0A7H0DN89 38914567
    892451 8xj8:A (2.67) BS02 ANP 3.6.4.- N/A A0A7H0DN89 38914567
    892452 8xj8:B (2.67) BS01 dna 3.6.4.- N/A A0A7H0DN89 38914567
    892453 8xj8:B (2.67) BS02 ANP 3.6.4.- N/A A0A7H0DN89 38914567
    892454 8xj8:C (2.67) BS01 dna 3.6.4.- N/A A0A7H0DN89 38914567
    892455 8xj8:C (2.67) BS02 ANP 3.6.4.- N/A A0A7H0DN89 38914567
    892456 8xj8:C (2.67) BS03 ANP 3.6.4.- N/A A0A7H0DN89 38914567
    892457 8xj8:D (2.67) BS01 dna 3.6.4.- N/A A0A7H0DN89 38914567
    892458 8xj8:D (2.67) BS02 ANP 3.6.4.- N/A A0A7H0DN89 38914567
    892459 8xjg:A (1.7) BS01 ZN N/A N/A A0A072FVI7 38211535
    892460 8xjg:A (1.7) BS02 ZN N/A N/A A0A072FVI7 38211535
    892461 8xjj:A (2.1) BS01 A1LVJ N/A N/A Q07889 39087485
    892462 8xjk:R (2.63) BS01 A1D5A ? GO:0004930 ... P43088 38446662
    892463 8xjl:R (2.77) BS01 UGU ? GO:0004930 ... P43088 38446662
    892464 8xjm:R (2.85) BS01 7WT ? GO:0004930 ... P43088 38446662
    892465 8xjn:R (3.06) BS01 A1D5A ? GO:0001669 ... P21731 38446662
    892466 8xjo:R (3.11) BS01 PUC ? GO:0001669 ... P21731 38446662
    892467 8xjv:0 (3.6) BS01 dna N/A N/A P62799 39103524
    892468 8xjv:0 (3.6) BS02 dna N/A N/A P62799 39103524
    892469 8xjv:1 (3.6) BS01 dna N/A N/A P62799 39103524
    892470 8xjv:1 (3.6) BS02 dna N/A N/A P62799 39103524
    892471 8xjv:2 (3.6) BS01 dna N/A N/A P62799 39103524
    892472 8xjv:2 (3.6) BS02 dna N/A N/A P62799 39103524
    892473 8xjv:3 (3.6) BS01 dna N/A N/A P62799 39103524
    892474 8xjv:4 (3.6) BS01 dna N/A N/A P62799 39103524
    892475 8xjv:4 (3.6) BS02 dna N/A N/A P62799 39103524
    892476 8xjv:5 (3.6) BS01 dna N/A N/A P62799 39103524
    892477 8xjv:5 (3.6) BS02 dna N/A N/A P62799 39103524
    892478 8xjv:6 (3.6) BS01 dna N/A N/A P62799 39103524
    892479 8xjv:6 (3.6) BS02 dna N/A N/A P62799 39103524
    892480 8xjv:7 (3.6) BS01 dna N/A N/A P62799 39103524
    892481 8xjv:7 (3.6) BS02 dna N/A N/A P62799 39103524
    892482 8xjv:8 (3.6) BS01 dna N/A N/A P62799 39103524
    892483 8xjv:8 (3.6) BS02 dna N/A N/A P62799 39103524
    892484 8xjv:9 (3.6) BS01 dna N/A N/A P62799 39103524
    892485 8xjv:9 (3.6) BS02 dna N/A N/A P62799 39103524
    892486 8xjv:A (3.6) BS01 dna N/A N/A Q6AZJ8 39103524
    892487 8xjv:A (3.6) BS02 dna N/A N/A Q6AZJ8 39103524
    892488 8xjv:Aa (3.6) BS01 dna N/A N/A P02281 39103524
    892489 8xjv:Aa (3.6) BS02 dna N/A N/A P02281 39103524
    892490 8xjv:Ab (3.6) BS01 dna N/A N/A P02281 39103524
    892491 8xjv:Ab (3.6) BS02 dna N/A N/A P02281 39103524
    892492 8xjv:Ac (3.6) BS01 dna N/A N/A P02281 39103524
    892493 8xjv:Ac (3.6) BS02 dna N/A N/A P02281 39103524
    892494 8xjv:Ad (3.6) BS01 dna N/A N/A P02281 39103524
    892495 8xjv:Ad (3.6) BS02 dna N/A N/A P02281 39103524
    892496 8xjv:Ae (3.6) BS01 dna N/A N/A Q6AZJ8 39103524
    892497 8xjv:Ae (3.6) BS02 dna N/A N/A Q6AZJ8 39103524
    892498 8xjv:Af (3.6) BS01 dna N/A N/A P02281 39103524
    892499 8xjv:Ag (3.6) BS01 dna N/A N/A P02281 39103524
    892500 8xjv:Ag (3.6) BS02 dna N/A N/A P02281 39103524
    892501 8xjv:Ah (3.6) BS01 dna N/A N/A P02259 39103524
    892502 8xjv:Ah (3.6) BS02 dna N/A N/A P02259 39103524
    892503 8xjv:Ai (3.6) BS01 dna N/A N/A P02259 39103524
    892504 8xjv:Ai (3.6) BS02 dna N/A N/A P02259 39103524
    892505 8xjv:Aj (3.6) BS01 dna N/A N/A P02259 39103524
    892506 8xjv:Aj (3.6) BS02 dna N/A N/A P02259 39103524
    892507 8xjv:Ak (3.6) BS01 dna N/A N/A P02259 39103524
    892508 8xjv:Ak (3.6) BS02 dna N/A N/A P02259 39103524
    892509 8xjv:Al (3.6) BS01 dna N/A N/A P02259 39103524
    892510 8xjv:Al (3.6) BS02 dna N/A N/A P02259 39103524
    892511 8xjv:Am (3.6) BS01 dna N/A N/A P02259 39103524
    892512 8xjv:Am (3.6) BS02 dna N/A N/A P02259 39103524
    892513 8xjv:An (3.6) BS01 dna N/A N/A P02259 39103524
    892514 8xjv:An (3.6) BS02 dna N/A N/A P02259 39103524
    892515 8xjv:Ao (3.6) BS01 dna N/A N/A P02259 39103524
    892516 8xjv:Ao (3.6) BS02 dna N/A N/A P02259 39103524
    892517 8xjv:Ap (3.6) BS01 dna N/A N/A P02259 39103524
    892518 8xjv:Ap (3.6) BS02 dna N/A N/A P02259 39103524
    892519 8xjv:Aq (3.6) BS01 dna N/A N/A P02259 39103524
    892520 8xjv:Aq (3.6) BS02 dna N/A N/A P02259 39103524
    892521 8xjv:Ar (3.6) BS01 dna N/A N/A P02259 39103524
    892522 8xjv:Ar (3.6) BS02 dna N/A N/A P02259 39103524
    892523 8xjv:As (3.6) BS01 dna N/A N/A P02259 39103524
    892524 8xjv:As (3.6) BS02 dna N/A N/A P02259 39103524
    892525 8xjv:At (3.6) BS01 dna N/A N/A P02281 39103524
    892526 8xjv:At (3.6) BS02 dna N/A N/A P02281 39103524
    892527 8xjv:B (3.6) BS01 dna N/A N/A Q6AZJ8 39103524
    892528 8xjv:B (3.6) BS02 dna N/A N/A Q6AZJ8 39103524
    892529 8xjv:C (3.6) BS01 dna N/A N/A Q6AZJ8 39103524
    892530 8xjv:C (3.6) BS02 dna N/A N/A Q6AZJ8 39103524
    892531 8xjv:CD (3.6) BS01 dna N/A N/A P62799 39103524
    892532 8xjv:CD (3.6) BS02 dna N/A N/A P62799 39103524
    892533 8xjv:D (3.6) BS01 dna N/A N/A Q6AZJ8 39103524
    892534 8xjv:D (3.6) BS02 dna N/A N/A Q6AZJ8 39103524
    892535 8xjv:E (3.6) BS01 dna N/A N/A Q6AZJ8 39103524
    892536 8xjv:E (3.6) BS02 dna N/A N/A Q6AZJ8 39103524
    892537 8xjv:F (3.6) BS01 dna N/A N/A Q6AZJ8 39103524
    892538 8xjv:F (3.6) BS02 dna N/A N/A Q6AZJ8 39103524
    892539 8xjv:G (3.6) BS01 dna N/A N/A Q6AZJ8 39103524
    892540 8xjv:G (3.6) BS02 dna N/A N/A Q6AZJ8 39103524
    892541 8xjv:H (3.6) BS01 dna N/A N/A Q6AZJ8 39103524
    892542 8xjv:H (3.6) BS02 dna N/A N/A Q6AZJ8 39103524
    892543 8xjv:I (3.6) BS01 dna N/A N/A Q6AZJ8 39103524
    892544 8xjv:I (3.6) BS02 dna N/A N/A Q6AZJ8 39103524
    892545 8xjv:J (3.6) BS01 dna N/A N/A P02281 39103524
    892546 8xjv:J (3.6) BS02 dna N/A N/A P02281 39103524
    892547 8xjv:K (3.6) BS01 dna N/A N/A Q6AZJ8 39103524
    892548 8xjv:K (3.6) BS02 dna N/A N/A Q6AZJ8 39103524
    892549 8xjv:L (3.6) BS01 dna N/A N/A Q6AZJ8 39103524
    892550 8xjv:L (3.6) BS02 dna N/A N/A Q6AZJ8 39103524
    892551 8xjv:M (3.6) BS01 dna N/A N/A P02281 39103524
    892552 8xjv:M (3.6) BS02 dna N/A N/A P02281 39103524
    892553 8xjv:N (3.6) BS01 dna N/A N/A P02281 39103524
    892554 8xjv:N (3.6) BS02 dna N/A N/A P02281 39103524
    892555 8xjv:O (3.6) BS01 dna N/A N/A P02281 39103524
    892556 8xjv:O (3.6) BS02 dna N/A N/A P02281 39103524
    892557 8xjv:P (3.6) BS01 dna N/A N/A P02281 39103524
    892558 8xjv:P (3.6) BS02 dna N/A N/A P02281 39103524
    892559 8xjv:Q (3.6) BS01 dna N/A N/A P02281 39103524
    892560 8xjv:Q (3.6) BS02 dna N/A N/A P02281 39103524
    892561 8xjv:R (3.6) BS01 dna N/A N/A P02281 39103524
    892562 8xjv:S (3.6) BS01 dna N/A N/A P02281 39103524
    892563 8xjv:S (3.6) BS02 dna N/A N/A P02281 39103524
    892564 8xjv:T (3.6) BS01 dna N/A N/A P02281 39103524
    892565 8xjv:T (3.6) BS02 dna N/A N/A P02281 39103524
    892566 8xjv:U (3.6) BS01 dna N/A N/A P02281 39103524
    892567 8xjv:U (3.6) BS02 dna N/A N/A P02281 39103524
    892568 8xjv:V (3.6) BS01 dna N/A N/A P02281 39103524
    892569 8xjv:V (3.6) BS02 dna N/A N/A P02281 39103524
    892570 8xjv:W (3.6) BS01 dna N/A N/A P02281 39103524
    892571 8xjv:W (3.6) BS02 dna N/A N/A P02281 39103524
    892572 8xjv:X (3.6) BS01 dna N/A N/A A0A310TTQ1 39103524
    892573 8xjv:X (3.6) BS02 dna N/A N/A A0A310TTQ1 39103524
    892574 8xjv:Y (3.6) BS01 dna N/A N/A A0A310TTQ1 39103524
    892575 8xjv:Y (3.6) BS02 dna N/A N/A A0A310TTQ1 39103524
    892576 8xjv:Z (3.6) BS01 dna N/A N/A A0A310TTQ1 39103524
    892577 8xjv:Z (3.6) BS02 dna N/A N/A A0A310TTQ1 39103524
    892578 8xjv:a (3.6) BS01 dna N/A N/A A0A310TTQ1 39103524
    892579 8xjv:a (3.6) BS02 dna N/A N/A A0A310TTQ1 39103524
    892580 8xjv:a2 (3.6) BS01 dna N/A N/A P62799 39103524
    892581 8xjv:a2 (3.6) BS02 dna N/A N/A P62799 39103524
    892582 8xjv:a3 (3.6) BS01 dna N/A N/A P62799 39103524
    892583 8xjv:a3 (3.6) BS02 dna N/A N/A P62799 39103524
    892584 8xjv:a4 (3.6) BS01 dna N/A N/A P62799 39103524
    892585 8xjv:a4 (3.6) BS02 dna N/A N/A P62799 39103524
    892586 8xjv:a5 (3.6) BS01 dna N/A N/A P62799 39103524
    892587 8xjv:a5 (3.6) BS02 dna N/A N/A P62799 39103524
    892588 8xjv:a6 (3.6) BS01 dna N/A N/A P62799 39103524
    892589 8xjv:a6 (3.6) BS02 dna N/A N/A P62799 39103524
    892590 8xjv:a7 (3.6) BS01 dna N/A N/A P62799 39103524
    892591 8xjv:a7 (3.6) BS02 dna N/A N/A P62799 39103524
    892592 8xjv:a8 (3.6) BS01 dna N/A N/A P62799 39103524
    892593 8xjv:a8 (3.6) BS02 dna N/A N/A P62799 39103524
    892594 8xjv:a9 (3.6) BS01 dna N/A N/A P62799 39103524
    892595 8xjv:a9 (3.6) BS02 dna N/A N/A P62799 39103524
    892596 8xjv:aj (3.6) BS01 dna N/A N/A Q6AZJ8 39103524
    892597 8xjv:aj (3.6) BS02 dna N/A N/A Q6AZJ8 39103524
    892598 8xjv:ak (3.6) BS01 dna N/A N/A Q6AZJ8 39103524
    892599 8xjv:ak (3.6) BS02 dna N/A N/A Q6AZJ8 39103524
    892600 8xjv:al (3.6) BS01 dna N/A N/A Q6AZJ8 39103524
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023)(download the PDF file).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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