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BioLiP
Download all results in tab-seperated text for 903398 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    891801 8x83:C (2.8) BS01 FRU ? GO:0001582 ... Q9V4K2 38305684
    891802 8x83:D (2.8) BS01 FRU ? GO:0001582 ... Q9V4K2 38305684
    891803 8x84:A (3.1) BS01 FRU ? GO:0001582 ... Q9V4K2 38305684
    891804 8x84:B (3.1) BS01 FRU ? GO:0001582 ... Q9V4K2 38305684
    891805 8x84:C (3.1) BS01 FRU ? GO:0001582 ... Q9V4K2 38305684
    891806 8x84:D (3.1) BS01 FRU ? GO:0001582 ... Q9V4K2 38305684
    891807 8x8a:A (1.53) BS01 peptide N/A N/A Q9H0R8 39236246
    891808 8x8g:A (2.27) BS01 BMA N/A N/A N/A 38938812
    891809 8x8g:A (2.27) BS02 MAN N/A N/A N/A 38938812
    891810 8x8g:A (2.27) BS03 MAN N/A N/A N/A 38938812
    891811 8x8g:A (2.27) BS04 SIA N/A N/A N/A 38938812
    891812 8x8g:A (2.27) BS05 NGO N/A N/A N/A 38938812
    891813 8x8g:A (2.27) BS06 CA N/A N/A N/A 38938812
    891814 8x8k:A (2.1) BS01 GLC N/A N/A O95210 39236246
    891815 8x8k:A (2.1) BS02 GLC N/A N/A O95210 39236246
    891816 8x8k:A (2.1) BS03 GLC N/A N/A O95210 39236246
    891817 8x8k:A (2.1) BS04 GLC N/A N/A O95210 39236246
    891818 8x8k:B (2.1) BS01 GLC N/A N/A O95210 39236246
    891819 8x8k:B (2.1) BS02 GLC N/A N/A O95210 39236246
    891820 8x8k:C (2.1) BS01 GLC N/A N/A O95210 39236246
    891821 8x8k:C (2.1) BS02 GLC N/A N/A O95210 39236246
    891822 8x8k:C (2.1) BS03 GLC N/A N/A O95210 39236246
    891823 8x8k:C (2.1) BS04 GLC N/A N/A O95210 39236246
    891824 8x8k:D (2.1) BS01 GLC N/A N/A O95210 39236246
    891825 8x8k:D (2.1) BS02 GLC N/A N/A O95210 39236246
    891826 8x8k:D (2.1) BS03 GLC N/A N/A O95210 39236246
    891827 8x8l:R (2.7) BS01 peptide ? GO:0004930 ... P35346 N/A
    891828 8x8n:R (2.9) BS01 peptide ? GO:0004930 ... P35346 N/A
    891829 8x8q:F (3.14) BS01 ZN ? GO:0005737 ... R9YK28 38755176
    891830 8x90:A (2.95) BS01 PS1 ? GO:0001540 ... O00555 38443561
    891831 8x90:A (2.95) BS02 CLR ? GO:0001540 ... O00555 38443561
    891832 8x90:A (2.95) BS03 PT5 ? GO:0001540 ... O00555 38443561
    891833 8x90:A (2.95) BS04 CA ? GO:0001540 ... O00555 38443561
    891834 8x90:A (2.95) BS05 Y01 ? GO:0001540 ... O00555 38443561
    891835 8x90:A (2.95) BS06 CLR ? GO:0001540 ... O00555 38443561
    891836 8x90:A (2.95) BS07 Y01 ? GO:0001540 ... O00555 38443561
    891837 8x90:A (2.95) BS08 Y01 ? GO:0001540 ... O00555 38443561
    891838 8x90:A (2.95) BS09 CLR ? GO:0001540 ... O00555 38443561
    891839 8x90:A (2.95) BS10 CLR ? GO:0001540 ... O00555 38443561
    891840 8x90:B (2.95) BS01 CA ? N/A P54289 38443561
    891841 8x91:A (3.11) BS01 peptide ? GO:0001540 ... O00555 38443561
    891842 8x91:A (3.11) BS02 CLR ? GO:0001540 ... O00555 38443561
    891843 8x91:A (3.11) BS03 PT5 ? GO:0001540 ... O00555 38443561
    891844 8x91:A (3.11) BS04 CA ? GO:0001540 ... O00555 38443561
    891845 8x91:A (3.11) BS05 Y01 ? GO:0001540 ... O00555 38443561
    891846 8x91:A (3.11) BS06 CLR ? GO:0001540 ... O00555 38443561
    891847 8x91:A (3.11) BS07 Y01 ? GO:0001540 ... O00555 38443561
    891848 8x91:A (3.11) BS08 Y01 ? GO:0001540 ... O00555 38443561
    891849 8x91:A (3.11) BS09 CLR ? GO:0001540 ... O00555 38443561
    891850 8x91:A (3.11) BS10 CLR ? GO:0001540 ... O00555 38443561
    891851 8x91:B (3.11) BS01 CA ? N/A P54289 38443561
    891852 8x93:A (2.92) BS01 CLR ? GO:0001540 ... O00555 38443561
    891853 8x93:A (2.92) BS02 PT5 ? GO:0001540 ... O00555 38443561
    891854 8x93:A (2.92) BS03 Y01 ? GO:0001540 ... O00555 38443561
    891855 8x93:A (2.92) BS04 CLR ? GO:0001540 ... O00555 38443561
    891856 8x93:A (2.92) BS05 CLR ? GO:0001540 ... O00555 38443561
    891857 8x93:A (2.92) BS06 Y01 ? GO:0001540 ... O00555 38443561
    891858 8x93:A (2.92) BS07 Y01 ? GO:0001540 ... O00555 38443561
    891859 8x93:A (2.92) BS08 CLR ? GO:0001540 ... O00555 38443561
    891860 8x93:A (2.92) BS09 CLR ? GO:0001540 ... O00555 38443561
    891861 8x93:A (2.92) BS10 CA ? GO:0001540 ... O00555 38443561
    891862 8x93:B (2.92) BS01 CA ? N/A P54289 38443561
    891863 8x94:A (2.55) BS01 EZI N/A N/A Q8NER1 39107321
    891864 8x94:B (2.55) BS01 EZI N/A N/A Q8NER1 39107321
    891865 8x94:C (2.55) BS01 EZI N/A N/A Q8NER1 39107321
    891866 8x94:C (2.55) BS02 CLR N/A N/A Q8NER1 39107321
    891867 8x94:D (2.55) BS01 EZI N/A N/A Q8NER1 39107321
    891868 8x9d:A (2.11) BS01 SF4 1.2.7.4 GO:0003824 ... Q9F8A8 38548760
    891869 8x9d:A (2.11) BS02 FES 1.2.7.4 GO:0003824 ... Q9F8A8 38548760
    891870 8x9d:A (2.11) BS03 XCC 1.2.7.4 GO:0003824 ... Q9F8A8 38548760
    891871 8x9d:A (2.11) BS04 FE 1.2.7.4 GO:0003824 ... Q9F8A8 38548760
    891872 8x9e:A (2.5) BS01 SF4 1.2.7.4 GO:0003824 ... Q9F8A8 38548760
    891873 8x9e:A (2.5) BS02 FES 1.2.7.4 GO:0003824 ... Q9F8A8 38548760
    891874 8x9e:A (2.5) BS03 XCC 1.2.7.4 GO:0003824 ... Q9F8A8 38548760
    891875 8x9e:A (2.5) BS04 FE 1.2.7.4 GO:0003824 ... Q9F8A8 38548760
    891876 8x9f:A (2.48) BS01 SF4 1.2.7.4 GO:0003824 ... Q9F8A8 38548760
    891877 8x9f:A (2.48) BS02 FES 1.2.7.4 GO:0003824 ... Q9F8A8 38548760
    891878 8x9f:A (2.48) BS03 XCC 1.2.7.4 GO:0003824 ... Q9F8A8 38548760
    891879 8x9f:A (2.48) BS04 S8I 1.2.7.4 GO:0003824 ... Q9F8A8 38548760
    891880 8x9g:A (3.11) BS01 SF4 1.2.7.4 GO:0003824 ... Q9F8A8 38548760
    891881 8x9g:A (3.11) BS02 FES 1.2.7.4 GO:0003824 ... Q9F8A8 38548760
    891882 8x9g:A (3.11) BS03 XCC 1.2.7.4 GO:0003824 ... Q9F8A8 38548760
    891883 8x9g:A (3.11) BS04 S7L 1.2.7.4 GO:0003824 ... Q9F8A8 38548760
    891884 8x9h:A (2.2) BS01 SF4 1.2.7.4 GO:0003824 ... Q9F8A8 38548760
    891885 8x9h:A (2.2) BS02 FES 1.2.7.4 GO:0003824 ... Q9F8A8 38548760
    891886 8x9h:A (2.2) BS03 XCC 1.2.7.4 GO:0003824 ... Q9F8A8 38548760
    891887 8x9h:A (2.2) BS04 FE 1.2.7.4 GO:0003824 ... Q9F8A8 38548760
    891888 8xa9:A (2.32) BS01 dna 3.1.-.- N/A Q9BQP7 38471810
    891889 8xa9:A (2.32) BS02 dna 3.1.-.- N/A Q9BQP7 38471810
    891890 8xa9:A (2.32) BS03 CA 3.1.-.- N/A Q9BQP7 38471810
    891891 8xa9:A (2.32) BS04 CA 3.1.-.- N/A Q9BQP7 38471810
    891892 8xa9:B (2.32) BS01 dna 3.1.-.- N/A Q9BQP7 38471810
    891893 8xa9:B (2.32) BS02 dna 3.1.-.- N/A Q9BQP7 38471810
    891894 8xa9:B (2.32) BS03 dna 3.1.-.- N/A Q9BQP7 38471810
    891895 8xa9:B (2.32) BS04 CA 3.1.-.- N/A Q9BQP7 38471810
    891896 8xa9:B (2.32) BS05 CA 3.1.-.- N/A Q9BQP7 38471810
    891897 8xak:A (3.5) BS01 dna N/A N/A N/A 39030241
    891898 8xak:A (3.5) BS02 ADP N/A N/A N/A 39030241
    891899 8xak:A (3.5) BS03 ALF N/A N/A N/A 39030241
    891900 8xak:C (3.5) BS01 dna N/A N/A N/A 39030241
    891901 8xak:C (3.5) BS02 ADP N/A N/A N/A 39030241
    891902 8xak:C (3.5) BS03 ALF N/A N/A N/A 39030241
    891903 8xam:A (1.3) BS01 SAM 2.5.1.6 GO:0004478 ... P31153 38342078
    891904 8xam:A (1.3) BS02 XRH 2.5.1.6 GO:0004478 ... P31153 38342078
    891905 8xam:A (1.3) BS03 SAM 2.5.1.6 GO:0004478 ... P31153 38342078
    891906 8xam:B (1.3) BS01 SAM 2.5.1.6 GO:0004478 ... P31153 38342078
    891907 8xam:B (1.3) BS02 XRH 2.5.1.6 GO:0004478 ... P31153 38342078
    891908 8xam:B (1.3) BS03 SAM 2.5.1.6 GO:0004478 ... P31153 38342078
    891909 8xar:A (1.19) BS01 YMW N/A GO:0004478 ... P31153 38818879
    891910 8xar:A (1.19) BS02 SAM N/A GO:0004478 ... P31153 38818879
    891911 8xas:A (2.346) BS01 dna ? GO:0003677 ... Q940D0 38198526
    891912 8xas:A (2.346) BS02 dna ? GO:0003677 ... Q940D0 38198526
    891913 8xas:B (2.346) BS01 dna ? GO:0003677 ... Q940D0 38198526
    891914 8xas:B (2.346) BS02 dna ? GO:0003677 ... Q940D0 38198526
    891915 8xas:C (2.346) BS01 dna ? GO:0003677 ... Q940D0 38198526
    891916 8xas:C (2.346) BS02 dna ? GO:0003677 ... Q940D0 38198526
    891917 8xas:D (2.346) BS01 dna ? GO:0003677 ... Q940D0 38198526
    891918 8xas:D (2.346) BS02 dna ? GO:0003677 ... Q940D0 38198526
    891919 8xas:E (2.346) BS01 dna ? GO:0003677 ... Q940D0 38198526
    891920 8xas:E (2.346) BS02 dna ? GO:0003677 ... Q940D0 38198526
    891921 8xas:F (2.346) BS01 dna ? GO:0003677 ... Q940D0 38198526
    891922 8xas:F (2.346) BS02 dna ? GO:0003677 ... Q940D0 38198526
    891923 8xaw:A (2.73) BS01 ADP N/A N/A N/A 38834762
    891924 8xaw:A (2.73) BS02 MG N/A N/A N/A 38834762
    891925 8xaw:B (2.73) BS01 dna N/A N/A N/A 38834762
    891926 8xaw:B (2.73) BS02 dna N/A N/A N/A 38834762
    891927 8xaw:B (2.73) BS03 ANP N/A N/A N/A 38834762
    891928 8xaw:C (2.73) BS01 dna N/A N/A N/A 38834762
    891929 8xaw:C (2.73) BS02 dna N/A N/A N/A 38834762
    891930 8xaw:C (2.73) BS03 ANP N/A N/A N/A 38834762
    891931 8xaw:C (2.73) BS04 ANP N/A N/A N/A 38834762
    891932 8xaw:C (2.73) BS05 MG N/A N/A N/A 38834762
    891933 8xaw:D (2.73) BS01 dna N/A N/A N/A 38834762
    891934 8xaw:D (2.73) BS02 dna N/A N/A N/A 38834762
    891935 8xaw:D (2.73) BS03 ANP N/A N/A N/A 38834762
    891936 8xaw:D (2.73) BS04 MG N/A N/A N/A 38834762
    891937 8xaw:E (2.73) BS01 dna N/A N/A N/A 38834762
    891938 8xaw:E (2.73) BS02 ADP N/A N/A N/A 38834762
    891939 8xaw:E (2.73) BS03 MG N/A N/A N/A 38834762
    891940 8xaw:F (2.73) BS01 ADP N/A N/A N/A 38834762
    891941 8xaw:F (2.73) BS02 MG N/A N/A N/A 38834762
    891942 8xax:A (2.92) BS01 dna N/A N/A N/A 38834762
    891943 8xax:A (2.92) BS02 dna N/A N/A N/A 38834762
    891944 8xax:A (2.92) BS03 ANP N/A N/A N/A 38834762
    891945 8xax:B (2.92) BS01 dna N/A N/A N/A 38834762
    891946 8xax:B (2.92) BS02 dna N/A N/A N/A 38834762
    891947 8xax:B (2.92) BS03 ANP N/A N/A N/A 38834762
    891948 8xax:C (2.92) BS01 dna N/A N/A N/A 38834762
    891949 8xax:C (2.92) BS02 dna N/A N/A N/A 38834762
    891950 8xax:C (2.92) BS03 ANP N/A N/A N/A 38834762
    891951 8xax:C (2.92) BS04 ANP N/A N/A N/A 38834762
    891952 8xax:C (2.92) BS05 MG N/A N/A N/A 38834762
    891953 8xax:D (2.92) BS01 dna N/A N/A N/A 38834762
    891954 8xax:E (2.92) BS01 ADP N/A N/A N/A 38834762
    891955 8xax:E (2.92) BS02 MG N/A N/A N/A 38834762
    891956 8xax:F (2.92) BS01 ADP N/A N/A N/A 38834762
    891957 8xax:F (2.92) BS02 MG N/A N/A N/A 38834762
    891958 8xay:A (2.81) BS01 AGS N/A N/A N/A 38834762
    891959 8xay:A (2.81) BS02 MG N/A N/A N/A 38834762
    891960 8xay:B (2.81) BS01 dna N/A N/A N/A 38834762
    891961 8xay:B (2.81) BS02 dna N/A N/A N/A 38834762
    891962 8xay:B (2.81) BS03 AGS N/A N/A N/A 38834762
    891963 8xay:C (2.81) BS01 dna N/A N/A N/A 38834762
    891964 8xay:C (2.81) BS02 dna N/A N/A N/A 38834762
    891965 8xay:C (2.81) BS03 AGS N/A N/A N/A 38834762
    891966 8xay:C (2.81) BS04 AGS N/A N/A N/A 38834762
    891967 8xay:D (2.81) BS01 dna N/A N/A N/A 38834762
    891968 8xay:D (2.81) BS02 dna N/A N/A N/A 38834762
    891969 8xay:D (2.81) BS03 AGS N/A N/A N/A 38834762
    891970 8xay:D (2.81) BS04 MG N/A N/A N/A 38834762
    891971 8xay:E (2.81) BS01 dna N/A N/A N/A 38834762
    891972 8xay:E (2.81) BS02 ADP N/A N/A N/A 38834762
    891973 8xay:E (2.81) BS03 MG N/A N/A N/A 38834762
    891974 8xay:F (2.81) BS01 ADP N/A N/A N/A 38834762
    891975 8xay:F (2.81) BS02 MG N/A N/A N/A 38834762
    891976 8xb0:A (1.12) BS01 YN8 N/A GO:0004478 ... P31153 38818879
    891977 8xb0:A (1.12) BS02 SAM N/A GO:0004478 ... P31153 38818879
    891978 8xb2:A (3.04) BS01 YNT N/A GO:0005515 ... P0AEX9
    P23975    		 39143211
    891979 8xb3:A (2.8) BS01 YMN N/A GO:0005515 ... P0AEX9
    P23975    		 39143211
    891980 8xbe:A (3.4) BS01 KW0 ? GO:0004930 ... Q9UPC5 38326347
    891981 8xbg:A (3.43) BS01 KW0 ? GO:0004930 ... Q9UPC5 38326347
    891982 8xbh:R (2.83) BS01 KW3 ? GO:0004930 ... Q9UPC5 38326347
    891983 8xbi:R (3.06) BS01 KW3 ? GO:0004930 ... Q9UPC5 38326347
    891984 8xbs:A (2.21) BS01 ZN ? GO:0003723 ... Q9GZC8 38742627
    891985 8xbs:A (2.21) BS02 CLR ? GO:0003723 ... Q9GZC8 38742627
    891986 8xbs:A (2.21) BS03 CLR ? GO:0003723 ... Q9GZC8 38742627
    891987 8xbs:A (2.21) BS04 CLR ? GO:0003723 ... Q9GZC8 38742627
    891988 8xbs:B (2.21) BS01 ZN ? GO:0003723 ... Q9GZC8 38742627
    891989 8xbs:B (2.21) BS02 CLR ? GO:0003723 ... Q9GZC8 38742627
    891990 8xbs:B (2.21) BS03 CLR ? GO:0003723 ... Q9GZC8 38742627
    891991 8xbs:B (2.21) BS04 CLR ? GO:0003723 ... Q9GZC8 38742627
    891992 8xbt:A (4.12) BS01 dna ? GO:0000786 ... P68431 38509361
    891993 8xbt:A (4.12) BS02 dna ? GO:0000786 ... P68431 38509361
    891994 8xbt:B (4.12) BS01 dna ? GO:0000781 ... P62805 38509361
    891995 8xbt:B (4.12) BS02 dna ? GO:0000781 ... P62805 38509361
    891996 8xbt:C (4.12) BS01 dna ? GO:0000786 ... P04908 38509361
    891997 8xbt:C (4.12) BS02 dna ? GO:0000786 ... P04908 38509361
    891998 8xbt:D (4.12) BS01 dna ? GO:0000786 ... P06899 38509361
    891999 8xbt:D (4.12) BS02 dna ? GO:0000786 ... P06899 38509361
    892000 8xbt:E (4.12) BS01 dna ? GO:0000786 ... P68431 38509361
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023)(download the PDF file).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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