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BioLiP
Download all results in tab-seperated text for 903398 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    891601 8x5l:A (2.75) BS01 RKD 2.7.11.11 GO:0000287 ... P17612 N/A
    891602 8x5l:B (2.75) BS01 RKD 2.7.11.11 GO:0000287 ... P17612 N/A
    891603 8x5m:A (2.0) BS01 Y4O 2.7.11.24 GO:0004672 ... P45983 N/A
    891604 8x5n:A (2.8) BS01 ATP 3.1.-.- GO:0004519 ... J8H9C1 38471529
    891605 8x5n:A (2.8) BS02 ATP 3.1.-.- GO:0004519 ... J8H9C1 38471529
    891606 8x5n:B (2.8) BS01 ATP 3.1.-.- GO:0004519 ... J8H9C1 38471529
    891607 8x5n:C (2.8) BS01 ATP 3.1.-.- GO:0004519 ... J8H9C1 38471529
    891608 8x5n:D (2.8) BS01 ATP 3.1.-.- GO:0004519 ... J8H9C1 38471529
    891609 8x5n:D (2.8) BS02 ATP 3.1.-.- GO:0004519 ... J8H9C1 38471529
    891610 8x5v:A (2.0) BS01 rna N/A N/A N/A 38961195
    891611 8x5v:A (2.0) BS02 dna N/A N/A N/A 38961195
    891612 8x5v:A (2.0) BS03 dna N/A N/A N/A 38961195
    891613 8x5y:B (3.0) BS01 XB7 ? GO:0004930 ... P0ABE7
    P35367    		 38167898
    891614 8x61:A (3.05) BS01 ATP ? GO:0000917 ... P0A9R7 38814940
    891615 8x61:A (3.05) BS02 ATP ? GO:0000917 ... P0A9R7 38814940
    891616 8x61:B (3.05) BS01 ATP ? GO:0000917 ... P0A9R7 38814940
    891617 8x61:B (3.05) BS02 ATP ? GO:0000917 ... P0A9R7 38814940
    891618 8x63:B (3.2) BS01 Y5E ? GO:0004930 ... P0ABE7
    P35367    		 38167898
    891619 8x64:B (3.4) BS01 Y5R ? GO:0004930 ... P0ABE7
    P35367    		 38167898
    891620 8x6f:C (3.7) BS01 dna 2.7.7.6 GO:0000428 ... P47768 38844782
    891621 8x6f:D (3.7) BS01 dna 2.7.7.6 GO:0000287 ... Q2G0N5 38844782
    891622 8x6f:D (3.7) BS02 dna 2.7.7.6 GO:0000287 ... Q2G0N5 38844782
    891623 8x6f:E (3.7) BS01 dna ? GO:0003677 ... P0A0J0 38844782
    891624 8x6f:E (3.7) BS02 dna ? GO:0003677 ... P0A0J0 38844782
    891625 8x6g:D (3.3) BS01 dna 2.7.7.6 GO:0000287 ... Q2G0N5 38844782
    891626 8x6g:H (3.3) BS01 dna ? GO:0003677 ... A0A390QYZ6 38844782
    891627 8x6g:H (3.3) BS02 dna ? GO:0003677 ... A0A390QYZ6 38844782
    891628 8x6m:A (2.0) BS01 ZN 1.1.1.6
    1.1.1.75    		 GO:0005829 ... P0A9S5 38483875
    891629 8x6m:A (2.0) BS02 NAD 1.1.1.6
    1.1.1.75    		 GO:0005829 ... P0A9S5 38483875
    891630 8x6m:A (2.0) BS03 GOL 1.1.1.6
    1.1.1.75    		 GO:0005829 ... P0A9S5 38483875
    891631 8x6m:A (2.0) BS04 GOL 1.1.1.6
    1.1.1.75    		 GO:0005829 ... P0A9S5 38483875
    891632 8x6m:B (2.0) BS01 ZN 1.1.1.6
    1.1.1.75    		 GO:0005829 ... P0A9S5 38483875
    891633 8x6m:B (2.0) BS02 NAD 1.1.1.6
    1.1.1.75    		 GO:0005829 ... P0A9S5 38483875
    891634 8x6r:A (1.85) BS01 GDP 3.6.5.2 GO:0003924 ... P01116 38176113
    891635 8x6r:A (1.85) BS02 Y9D 3.6.5.2 GO:0003924 ... P01116 38176113
    891636 8x6r:B (1.85) BS01 GDP 3.6.5.2 GO:0003924 ... P01116 38176113
    891637 8x6r:B (1.85) BS02 Y9D 3.6.5.2 GO:0003924 ... P01116 38176113
    891638 8x6r:C (1.85) BS01 GDP 3.6.5.2 GO:0003924 ... P01116 38176113
    891639 8x6r:C (1.85) BS02 Y9D 3.6.5.2 GO:0003924 ... P01116 38176113
    891640 8x6r:D (1.85) BS01 GDP 3.6.5.2 GO:0003924 ... P01116 38176113
    891641 8x6r:D (1.85) BS02 Y9D 3.6.5.2 GO:0003924 ... P01116 38176113
    891642 8x6r:E (1.85) BS01 GDP 3.6.5.2 GO:0003924 ... P01116 38176113
    891643 8x6r:E (1.85) BS02 Y9D 3.6.5.2 GO:0003924 ... P01116 38176113
    891644 8x6r:F (1.85) BS01 GDP 3.6.5.2 GO:0003924 ... P01116 38176113
    891645 8x6r:F (1.85) BS02 Y9D 3.6.5.2 GO:0003924 ... P01116 38176113
    891646 8x6z:A (2.95) BS01 MN N/A GO:0003824 ... N/A N/A
    891647 8x6z:A (2.95) BS02 MN N/A GO:0003824 ... N/A N/A
    891648 8x6z:B (2.95) BS01 MN N/A GO:0003824 ... N/A N/A
    891649 8x6z:B (2.95) BS02 MN N/A GO:0003824 ... N/A N/A
    891650 8x6z:C (2.95) BS01 MN N/A GO:0003824 ... N/A N/A
    891651 8x6z:D (2.95) BS01 MN N/A GO:0003824 ... N/A N/A
    891652 8x6z:E (2.95) BS01 MN N/A GO:0003824 ... N/A N/A
    891653 8x6z:E (2.95) BS02 MN N/A GO:0003824 ... N/A N/A
    891654 8x6z:F (2.95) BS01 MN N/A GO:0003824 ... N/A N/A
    891655 8x6z:F (2.95) BS02 MN N/A GO:0003824 ... N/A N/A
    891656 8x71:B (1.58) BS01 YCC N/A N/A Q06830 N/A
    891657 8x72:A (2.2) BS01 ANP 2.7.11.21 GO:0004672 ... P53350 N/A
    891658 8x72:A (2.2) BS02 ZN 2.7.11.21 GO:0004672 ... P53350 N/A
    891659 8x73:B (1.61) BS01 YC0 N/A N/A Q06830 N/A
    891660 8x77:B (3.52) BS01 SAH 2.1.1.85 GO:0000785 ... Q86TU7 38755176
    891661 8x77:C (3.52) BS01 ZN ? GO:0005737 ... R9YK28 38755176
    891662 8x77:E (3.52) BS01 ZN ? GO:0005737 ... R9YK28 38755176
    891663 8x77:F (3.52) BS01 ZN ? GO:0005737 ... R9YK28 38755176
    891664 8x77:H (3.52) BS01 ZN ? GO:0005737 ... R9YK28 38755176
    891665 8x79:R (2.41) BS01 Y9Q ? GO:0004930 ... P43119 38335293
    891666 8x7a:R (2.56) BS01 Y9J ? GO:0004930 ... P43119 38335293
    891667 8x7i:A (3.27) BS01 dna N/A N/A Q71DI3 N/A
    891668 8x7i:A (3.27) BS02 dna N/A N/A Q71DI3 N/A
    891669 8x7i:B (3.27) BS01 dna N/A N/A P62805 N/A
    891670 8x7i:B (3.27) BS02 dna N/A N/A P62805 N/A
    891671 8x7i:C (3.27) BS01 dna N/A N/A P04908 N/A
    891672 8x7i:C (3.27) BS02 dna N/A N/A P04908 N/A
    891673 8x7i:D (3.27) BS01 dna N/A N/A O60814 N/A
    891674 8x7i:D (3.27) BS02 dna N/A N/A O60814 N/A
    891675 8x7i:E (3.27) BS01 dna N/A N/A Q71DI3 N/A
    891676 8x7i:E (3.27) BS02 dna N/A N/A Q71DI3 N/A
    891677 8x7i:F (3.27) BS01 dna N/A N/A P62805 N/A
    891678 8x7i:F (3.27) BS02 dna N/A N/A P62805 N/A
    891679 8x7i:G (3.27) BS01 dna N/A N/A P04908 N/A
    891680 8x7i:G (3.27) BS02 dna N/A N/A P04908 N/A
    891681 8x7i:H (3.27) BS01 dna N/A N/A O60814 N/A
    891682 8x7i:H (3.27) BS02 dna N/A N/A O60814 N/A
    891683 8x7i:L (3.27) BS01 ZN N/A N/A Q8IYW5 N/A
    891684 8x7i:L (3.27) BS02 ZN N/A N/A Q8IYW5 N/A
    891685 8x7j:A (3.39) BS01 dna N/A N/A Q71DI3 N/A
    891686 8x7j:A (3.39) BS02 dna N/A N/A Q71DI3 N/A
    891687 8x7j:B (3.39) BS01 dna N/A N/A P62805 N/A
    891688 8x7j:B (3.39) BS02 dna N/A N/A P62805 N/A
    891689 8x7j:C (3.39) BS01 dna N/A N/A P04908 N/A
    891690 8x7j:C (3.39) BS02 dna N/A N/A P04908 N/A
    891691 8x7j:D (3.39) BS01 dna N/A N/A O60814 N/A
    891692 8x7j:D (3.39) BS02 dna N/A N/A O60814 N/A
    891693 8x7j:E (3.39) BS01 dna N/A N/A Q71DI3 N/A
    891694 8x7j:E (3.39) BS02 dna N/A N/A Q71DI3 N/A
    891695 8x7j:F (3.39) BS01 dna N/A N/A P62805 N/A
    891696 8x7j:F (3.39) BS02 dna N/A N/A P62805 N/A
    891697 8x7j:G (3.39) BS01 dna N/A N/A P04908 N/A
    891698 8x7j:G (3.39) BS02 dna N/A N/A P04908 N/A
    891699 8x7j:H (3.39) BS01 dna N/A N/A O60814 N/A
    891700 8x7j:L (3.39) BS01 ZN N/A N/A Q8IYW5 N/A
    891701 8x7j:L (3.39) BS02 ZN N/A N/A Q8IYW5 N/A
    891702 8x7k:A (3.27) BS01 dna N/A N/A Q71DI3 N/A
    891703 8x7k:A (3.27) BS02 dna N/A N/A Q71DI3 N/A
    891704 8x7k:B (3.27) BS01 dna N/A N/A P62805 N/A
    891705 8x7k:B (3.27) BS02 dna N/A N/A P62805 N/A
    891706 8x7k:C (3.27) BS01 dna N/A N/A P04908 N/A
    891707 8x7k:C (3.27) BS02 dna N/A N/A P04908 N/A
    891708 8x7k:D (3.27) BS01 dna N/A N/A O60814 N/A
    891709 8x7k:D (3.27) BS02 dna N/A N/A O60814 N/A
    891710 8x7k:E (3.27) BS01 dna N/A N/A Q71DI3 N/A
    891711 8x7k:E (3.27) BS02 dna N/A N/A Q71DI3 N/A
    891712 8x7k:F (3.27) BS01 dna N/A N/A P62805 N/A
    891713 8x7k:F (3.27) BS02 dna N/A N/A P62805 N/A
    891714 8x7k:G (3.27) BS01 dna N/A N/A P04908 N/A
    891715 8x7k:G (3.27) BS02 dna N/A N/A P04908 N/A
    891716 8x7k:H (3.27) BS01 dna N/A N/A O60814 N/A
    891717 8x7k:H (3.27) BS02 dna N/A N/A O60814 N/A
    891718 8x7k:L (3.27) BS01 ZN N/A N/A Q8IYW5 N/A
    891719 8x7k:L (3.27) BS02 ZN N/A N/A Q8IYW5 N/A
    891720 8x7l:F (3.4) BS01 IZ8 N/A N/A P37840 39172784
    891721 8x7l:H (3.4) BS01 IZ8 N/A N/A P37840 39172784
    891722 8x7l:I (3.4) BS01 IZ8 N/A N/A P37840 39172784
    891723 8x7m:A (3.0) BS01 YA9 N/A N/A P37840 39172784
    891724 8x7m:B (3.0) BS01 YA9 N/A N/A P37840 39172784
    891725 8x7m:C (3.0) BS01 YA9 N/A N/A P37840 39172784
    891726 8x7m:C (3.0) BS02 YA9 N/A N/A P37840 39172784
    891727 8x7m:D (3.0) BS01 YA9 N/A N/A P37840 39172784
    891728 8x7m:E (3.0) BS01 YA9 N/A N/A P37840 39172784
    891729 8x7m:E (3.0) BS02 YA9 N/A N/A P37840 39172784
    891730 8x7m:F (3.0) BS01 YA9 N/A N/A P37840 39172784
    891731 8x7m:F (3.0) BS02 YA9 N/A N/A P37840 39172784
    891732 8x7m:F (3.0) BS03 YA9 N/A N/A P37840 39172784
    891733 8x7m:G (3.0) BS01 YA9 N/A N/A P37840 39172784
    891734 8x7m:G (3.0) BS02 YA9 N/A N/A P37840 39172784
    891735 8x7m:G (3.0) BS03 YA9 N/A N/A P37840 39172784
    891736 8x7m:H (3.0) BS01 YA9 N/A N/A P37840 39172784
    891737 8x7m:H (3.0) BS02 YA9 N/A N/A P37840 39172784
    891738 8x7m:I (3.0) BS01 YA9 N/A N/A P37840 39172784
    891739 8x7m:I (3.0) BS02 YA9 N/A N/A P37840 39172784
    891740 8x7m:I (3.0) BS03 YA9 N/A N/A P37840 39172784
    891741 8x7m:J (3.0) BS01 YA9 N/A N/A P37840 39172784
    891742 8x7m:J (3.0) BS02 YA9 N/A N/A P37840 39172784
    891743 8x7m:J (3.0) BS03 YA9 N/A N/A P37840 39172784
    891744 8x7m:J (3.0) BS04 YA9 N/A N/A P37840 39172784
    891745 8x7o:A (3.5) BS01 IZV N/A N/A P37840 39172784
    891746 8x7o:A (3.5) BS02 IZV N/A N/A P37840 39172784
    891747 8x7o:C (3.5) BS01 IZV N/A N/A P37840 39172784
    891748 8x7o:C (3.5) BS02 IZV N/A N/A P37840 39172784
    891749 8x7o:D (3.5) BS01 IZV N/A N/A P37840 39172784
    891750 8x7o:D (3.5) BS02 IZV N/A N/A P37840 39172784
    891751 8x7o:E (3.5) BS01 IZV N/A N/A P37840 39172784
    891752 8x7o:E (3.5) BS02 IZV N/A N/A P37840 39172784
    891753 8x7o:G (3.5) BS01 IZV N/A N/A P37840 39172784
    891754 8x7o:G (3.5) BS02 IZV N/A N/A P37840 39172784
    891755 8x7p:A (2.7) BS01 V79 N/A N/A P37840 39172784
    891756 8x7p:B (2.7) BS01 V79 N/A N/A P37840 39172784
    891757 8x7p:C (2.7) BS01 V79 N/A N/A P37840 39172784
    891758 8x7p:D (2.7) BS01 V79 N/A N/A P37840 39172784
    891759 8x7p:E (2.7) BS01 V79 N/A N/A P37840 39172784
    891760 8x7q:A (2.7) BS01 3LS N/A N/A P37840 39172784
    891761 8x7q:B (2.7) BS01 3LS N/A N/A P37840 39172784
    891762 8x7q:C (2.7) BS01 3LS N/A N/A P37840 39172784
    891763 8x7q:E (2.7) BS01 3LS N/A N/A P37840 39172784
    891764 8x7q:F (2.7) BS01 3LS N/A N/A P37840 39172784
    891765 8x7q:G (2.7) BS01 3LS N/A N/A P37840 39172784
    891766 8x7q:H (2.7) BS01 3LS N/A N/A P37840 39172784
    891767 8x7q:I (2.7) BS01 3LS N/A N/A P37840 39172784
    891768 8x7q:J (2.7) BS01 3LS N/A N/A P37840 39172784
    891769 8x7r:A (3.0) BS01 Y9W N/A N/A P37840 39172784
    891770 8x7r:A (3.0) BS02 Y9W N/A N/A P37840 39172784
    891771 8x7r:B (3.0) BS01 Y9W N/A N/A P37840 39172784
    891772 8x7r:B (3.0) BS02 Y9W N/A N/A P37840 39172784
    891773 8x7r:C (3.0) BS01 Y9W N/A N/A P37840 39172784
    891774 8x7r:C (3.0) BS02 Y9W N/A N/A P37840 39172784
    891775 8x7r:D (3.0) BS01 Y9W N/A N/A P37840 39172784
    891776 8x7r:D (3.0) BS02 Y9W N/A N/A P37840 39172784
    891777 8x7r:D (3.0) BS03 Y9W N/A N/A P37840 39172784
    891778 8x7r:E (3.0) BS01 Y9W N/A N/A P37840 39172784
    891779 8x7r:E (3.0) BS02 Y9W N/A N/A P37840 39172784
    891780 8x7r:F (3.0) BS01 Y9W N/A N/A P37840 39172784
    891781 8x7r:F (3.0) BS02 Y9W N/A N/A P37840 39172784
    891782 8x7r:G (3.0) BS01 Y9W N/A N/A P37840 39172784
    891783 8x7r:G (3.0) BS02 Y9W N/A N/A P37840 39172784
    891784 8x7r:G (3.0) BS03 Y9W N/A N/A P37840 39172784
    891785 8x7r:H (3.0) BS01 Y9W N/A N/A P37840 39172784
    891786 8x7r:I (3.0) BS01 Y9W N/A N/A P37840 39172784
    891787 8x7r:J (3.0) BS01 Y9W N/A N/A P37840 39172784
    891788 8x7r:J (3.0) BS02 Y9W N/A N/A P37840 39172784
    891789 8x7r:J (3.0) BS03 Y9W N/A N/A P37840 39172784
    891790 8x7u:A (3.57) BS01 ATP 3.6.4.12 GO:0003677 ... Q5JIT1 N/A
    891791 8x7u:B (3.57) BS01 ATP 3.6.4.12 GO:0003677 ... Q5JIT1 N/A
    891792 8x7u:C (3.57) BS01 ATP 3.6.4.12 GO:0003677 ... Q5JIT1 N/A
    891793 8x7u:C (3.57) BS02 ATP 3.6.4.12 GO:0003677 ... Q5JIT1 N/A
    891794 8x7u:D (3.57) BS01 ATP 3.6.4.12 GO:0003677 ... Q5JIT1 N/A
    891795 8x7u:D (3.57) BS02 ATP 3.6.4.12 GO:0003677 ... Q5JIT1 N/A
    891796 8x7u:E (3.57) BS01 ATP 3.6.4.12 GO:0003677 ... Q5JIT1 N/A
    891797 8x7u:E (3.57) BS02 ATP 3.6.4.12 GO:0003677 ... Q5JIT1 N/A
    891798 8x7u:F (3.57) BS01 ATP 3.6.4.12 GO:0003677 ... Q5JIT1 N/A
    891799 8x83:A (2.8) BS01 FRU ? GO:0001582 ... Q9V4K2 38305684
    891800 8x83:B (2.8) BS01 FRU ? GO:0001582 ... Q9V4K2 38305684
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023)(download the PDF file).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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