Home Research COVID-19 Services Publications People Teaching Job Opening News Forum --> -->
Online Services

●I-TASSER ●I-TASSER-MTD ●C-I-TASSER ●CR-I-TASSER ●QUARK ●C-QUARK ●LOMETS ●MUSTER ●CEthreader ●SEGMER ●DeepFold ●DeepFoldRNA ●FoldDesign ●COFACTOR ●COACH ●MetaGO ●TripletGO ●IonCom ●FG-MD ●ModRefiner ●REMO ●DEMO ●DEMO-EM ●DMFold ●SPRING ●COTH ●Threpp ●PEPPI ●BSpred ●ANGLOR ●EDock ●BSP-SLIM ●SAXSTER ●FUpred ●ThreaDom ●ThreaDomEx ●EvoDesign ●BindProf ●BindProfX ●SSIPe ●GPCR-I-TASSER ●MAGELLAN ●ResQ ●STRUM ●DAMpred

●TM-score ●TM-align ●US-align ●MM-align ●RNA-align ●NW-align ●LS-align ●EDTSurf ●MVP ●MVP-Fit ●SPICKER ●HAAD ●PSSpred ●3DRobot ●MR-REX ●I-TASSER-MR ●SVMSEQ ●NeBcon ●ResPRE ●TripletRes ●DeepPotential ●WDL-RF ●ATPbind ●DockRMSD ●DeepMSA ●FASPR ●EM-Refiner ●GPU-I-TASSER

●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
Download all results in tab-seperated text for 903398 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

    • Sort results by
    << < 4448 4449 4450 4451 4452 4453 4454 4455 4456 4457 4458 4459 4460 4461 4462 4463 4464 4465 4466 4467 4468 > >>
    Go to page

    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    891401 8x20:A (2.7) BS02 XTE N/A N/A P12497 38977798
    891402 8x20:B (2.7) BS01 dna N/A N/A P12497 38977798
    891403 8x20:C (2.7) BS01 dna N/A N/A P12497 38977798
    891404 8x20:C (2.7) BS02 XTE N/A N/A P12497 38977798
    891405 8x20:C (2.7) BS03 MG N/A N/A P12497 38977798
    891406 8x20:D (2.7) BS01 dna N/A N/A P12497 38977798
    891407 8x21:A (2.33) BS01 dna N/A N/A P12497 38977798
    891408 8x21:A (2.33) BS02 ET9 N/A N/A P12497 38977798
    891409 8x21:A (2.33) BS03 MG N/A N/A P12497 38977798
    891410 8x21:B (2.33) BS01 dna N/A N/A P12497 38977798
    891411 8x21:C (2.33) BS01 dna N/A N/A P12497 38977798
    891412 8x21:C (2.33) BS02 ET9 N/A N/A P12497 38977798
    891413 8x21:C (2.33) BS03 MG N/A N/A P12497 38977798
    891414 8x22:A (2.31) BS01 dna N/A N/A P12497 38977798
    891415 8x22:A (2.31) BS02 DGT N/A N/A P12497 38977798
    891416 8x22:A (2.31) BS03 MG N/A N/A P12497 38977798
    891417 8x22:B (2.31) BS01 dna N/A N/A P12497 38977798
    891418 8x22:C (2.31) BS01 dna N/A N/A P12497 38977798
    891419 8x22:C (2.31) BS02 DGT N/A N/A P12497 38977798
    891420 8x22:C (2.31) BS03 MG N/A N/A P12497 38977798
    891421 8x2a:A (1.3) BS01 LTJ 2.7.10.2 GO:0004672 ... P51813 N/A
    891422 8x2h:A (2.9) BS01 ZN 2.4.1.-
    3.4.22.-    		 GO:0005576 ... T0D3N5 N/A
    891423 8x2i:A (2.5) BS01 ZN 2.4.1.-
    3.4.22.-    		 GO:0005576 ... T0D3N5 N/A
    891424 8x2j:A (2.7) BS01 HEC ? GO:0016020 ... A9WEV2 38299372
    891425 8x2j:A (2.7) BS02 HEC ? GO:0016020 ... A9WEV2 38299372
    891426 8x2j:A (2.7) BS03 HEC ? GO:0016020 ... A9WEV2 38299372
    891427 8x2j:A (2.7) BS04 HEC ? GO:0016020 ... A9WEV2 38299372
    891428 8x2j:A (2.7) BS05 HEC ? GO:0016020 ... A9WEV2 38299372
    891429 8x2j:B (2.7) BS01 HEC ? N/A A9WEV3 38299372
    891430 8x2j:B (2.7) BS02 HEC ? N/A A9WEV3 38299372
    891431 8x2j:B (2.7) BS03 SF4 ? N/A A9WEV3 38299372
    891432 8x2j:B (2.7) BS04 SF4 ? N/A A9WEV3 38299372
    891433 8x2j:B (2.7) BS05 SF4 ? N/A A9WEV3 38299372
    891434 8x2j:B (2.7) BS06 F3S ? N/A A9WEV3 38299372
    891435 8x2j:C (2.7) BS01 HEC ? GO:0005886 ... A9WEV4 38299372
    891436 8x2j:C (2.7) BS02 JLQ ? GO:0005886 ... A9WEV4 38299372
    891437 8x2j:C (2.7) BS03 HQO ? GO:0005886 ... A9WEV4 38299372
    891438 8x2j:C (2.7) BS04 JL3 ? GO:0005886 ... A9WEV4 38299372
    891439 8x2j:C (2.7) BS05 JM9 ? GO:0005886 ... A9WEV4 38299372
    891440 8x2j:D (2.7) BS01 JM9 ? GO:0016020 ... A9WEV5 38299372
    891441 8x2j:E (2.7) BS01 HEC ? GO:0009055 ... A9WEV6 38299372
    891442 8x2j:E (2.7) BS02 HEC ? GO:0009055 ... A9WEV6 38299372
    891443 8x2j:F (2.7) BS01 JLQ ? GO:0016020 ... A9WEV7 38299372
    891444 8x2j:F (2.7) BS02 JL3 ? GO:0016020 ... A9WEV7 38299372
    891445 8x2j:F (2.7) BS03 JM9 ? GO:0016020 ... A9WEV7 38299372
    891446 8x2k:A (3.03) BS01 5YM ? GO:0004930 ... P0ABE7
    P46089    		 N/A
    891447 8x2l:B (2.99) BS01 FAD 1.-.-.- GO:0005515 ... P04839 38355798
    891448 8x2l:B (2.99) BS02 HEM 1.-.-.- GO:0005515 ... P04839 38355798
    891449 8x2l:B (2.99) BS03 HEM 1.-.-.- GO:0005515 ... P04839 38355798
    891450 8x2l:B (2.99) BS04 MG 1.-.-.- GO:0005515 ... P04839 38355798
    891451 8x35:A (1.92) BS01 IPE 2.5.1.28 GO:0000287 ... C1K5M2 38225831
    891452 8x35:A (1.92) BS02 DST 2.5.1.28 GO:0000287 ... C1K5M2 38225831
    891453 8x35:B (1.92) BS01 IPE 2.5.1.28 GO:0000287 ... C1K5M2 38225831
    891454 8x35:B (1.92) BS02 DPO 2.5.1.28 GO:0000287 ... C1K5M2 38225831
    891455 8x35:B (1.92) BS03 DPO 2.5.1.28 GO:0000287 ... C1K5M2 38225831
    891456 8x36:A (2.28) BS01 DST 2.5.1.28 GO:0016765 ... C1K5M2 38225831
    891457 8x36:A (2.28) BS02 IPE 2.5.1.28 GO:0016765 ... C1K5M2 38225831
    891458 8x36:B (2.28) BS01 IPE 2.5.1.28 GO:0016765 ... C1K5M2 38225831
    891459 8x36:B (2.28) BS02 IPE 2.5.1.28 GO:0016765 ... C1K5M2 38225831
    891460 8x36:B (2.28) BS03 DST 2.5.1.28 GO:0016765 ... C1K5M2 38225831
    891461 8x37:A (1.98) BS01 DST 2.5.1.28 GO:0016765 ... C1K5M2 38225831
    891462 8x37:A (1.98) BS02 DST 2.5.1.28 GO:0016765 ... C1K5M2 38225831
    891463 8x37:B (1.98) BS01 DST 2.5.1.28 GO:0016765 ... C1K5M2 38225831
    891464 8x37:B (1.98) BS02 DST 2.5.1.28 GO:0016765 ... C1K5M2 38225831
    891465 8x37:B (1.98) BS03 DST 2.5.1.28 GO:0016765 ... C1K5M2 38225831
    891466 8x37:B (1.98) BS04 MG 2.5.1.28 GO:0016765 ... C1K5M2 38225831
    891467 8x38:A (2.0) BS01 FAD N/A GO:0071949 ... N/A N/A
    891468 8x39:A (1.7) BS01 CA ? GO:0000272 ... A3DK52 38501488
    891469 8x39:A (1.7) BS02 CA ? GO:0000272 ... A3DK52 38501488
    891470 8x39:A (1.7) BS03 CA ? GO:0000272 ... A3DK52 38501488
    891471 8x39:A (1.7) BS04 CA ? GO:0000272 ... A3DK52 38501488
    891472 8x39:B (1.7) BS01 CA ? GO:0000272 ... A3DK52 38501488
    891473 8x39:B (1.7) BS02 CA ? GO:0000272 ... A3DK52 38501488
    891474 8x39:B (1.7) BS03 CA ? GO:0000272 ... A3DK52 38501488
    891475 8x39:B (1.7) BS04 CA ? GO:0000272 ... A3DK52 38501488
    891476 8x3a:A (-1.00) BS01 CA ? GO:0000272 ... A3DK52 38501488
    891477 8x3a:A (-1.00) BS02 CA ? GO:0000272 ... A3DK52 38501488
    891478 8x3a:A (-1.00) BS03 CA ? GO:0000272 ... A3DK52 38501488
    891479 8x3a:A (-1.00) BS04 CA ? GO:0000272 ... A3DK52 38501488
    891480 8x3e:A (2.5) BS01 A1L3H N/A N/A Q6WG30 N/A
    891481 8x3e:A (2.5) BS02 HEM N/A N/A Q6WG30 N/A
    891482 8x3g:A (1.84) BS01 MN N/A N/A N/A 39033196
    891483 8x3g:A (1.84) BS02 MN N/A N/A N/A 39033196
    891484 8x3g:B (1.84) BS01 MN N/A N/A N/A 39033196
    891485 8x3g:B (1.84) BS02 MN N/A N/A N/A 39033196
    891486 8x3h:A (0.93) BS01 FE ? GO:0005576 ... P02789 N/A
    891487 8x3h:A (0.93) BS02 CO3 ? GO:0005576 ... P02789 N/A
    891488 8x3r:A (1.76) BS01 peptide ? GO:0000122 ... P61964 38744853
    891489 8x3s:A (1.87) BS01 peptide ? GO:0000122 ... P61964 38744853
    891490 8x3v:A (2.9) BS01 ATP N/A N/A P03304 N/A
    891491 8x3v:B (2.9) BS01 ATP N/A N/A P03304 N/A
    891492 8x3w:A (2.01) BS01 ZN N/A N/A O59487 39146930
    891493 8x3w:A (2.01) BS02 ZN N/A N/A O59487 39146930
    891494 8x3w:A (2.01) BS03 SO3 N/A N/A O59487 39146930
    891495 8x3w:A (2.01) BS04 SO3 N/A N/A O59487 39146930
    891496 8x3w:A (2.01) BS05 SO3 N/A N/A O59487 39146930
    891497 8x3w:A (2.01) BS06 ARG N/A N/A O59487 39146930
    891498 8x3w:B (2.01) BS01 SO3 N/A N/A O59487 39146930
    891499 8x3w:B (2.01) BS02 ZN N/A N/A O59487 39146930
    891500 8x3w:B (2.01) BS03 SO3 N/A N/A O59487 39146930
    891501 8x3w:B (2.01) BS04 ARG N/A N/A O59487 39146930
    891502 8x41:A (2.35) BS01 MTA N/A N/A O59487 39146930
    891503 8x41:A (2.35) BS02 ADN N/A N/A O59487 39146930
    891504 8x41:A (2.35) BS03 ZN N/A N/A O59487 39146930
    891505 8x41:A (2.35) BS04 SO3 N/A N/A O59487 39146930
    891506 8x41:A (2.35) BS05 SO3 N/A N/A O59487 39146930
    891507 8x41:B (2.35) BS01 MTA N/A N/A O59487 39146930
    891508 8x41:B (2.35) BS02 ADN N/A N/A O59487 39146930
    891509 8x41:B (2.35) BS03 ZN N/A N/A O59487 39146930
    891510 8x41:B (2.35) BS04 SO3 N/A N/A O59487 39146930
    891511 8x41:B (2.35) BS05 SO3 N/A N/A O59487 39146930
    891512 8x43:A (3.0) BS01 7Q0 ? GO:0005216 ... O43526 38167918
    891513 8x43:A (3.0) BS02 7Q0 ? GO:0005216 ... O43526 38167918
    891514 8x43:C (3.0) BS01 7Q0 ? GO:0005216 ... O43526 38167918
    891515 8x43:C (3.0) BS02 7Q0 ? GO:0005216 ... O43526 38167918
    891516 8x43:E (3.0) BS01 7Q0 ? GO:0005216 ... O43526 38167918
    891517 8x43:E (3.0) BS02 7Q0 ? GO:0005216 ... O43526 38167918
    891518 8x43:G (3.0) BS01 7Q0 ? GO:0005216 ... O43526 38167918
    891519 8x43:G (3.0) BS02 7Q0 ? GO:0005216 ... O43526 38167918
    891520 8x44:A (2.6) BS01 MTA N/A N/A O59487 39146930
    891521 8x44:A (2.6) BS02 ZN N/A N/A O59487 39146930
    891522 8x44:B (2.6) BS01 MTA N/A N/A O59487 39146930
    891523 8x44:B (2.6) BS02 ZN N/A N/A O59487 39146930
    891524 8x44:B (2.6) BS03 SO3 N/A N/A O59487 39146930
    891525 8x45:A (2.5) BS01 MTA N/A N/A O59487 39146930
    891526 8x45:A (2.5) BS02 SO3 N/A N/A O59487 39146930
    891527 8x45:B (2.5) BS01 MTA N/A N/A O59487 39146930
    891528 8x45:B (2.5) BS02 SO3 N/A N/A O59487 39146930
    891529 8x46:A (2.2) BS01 SFG N/A N/A O59487 39146930
    891530 8x46:A (2.2) BS02 ZN N/A N/A O59487 39146930
    891531 8x46:A (2.2) BS03 ARG N/A N/A O59487 39146930
    891532 8x46:B (2.2) BS01 SFG N/A N/A O59487 39146930
    891533 8x46:B (2.2) BS02 SO3 N/A N/A O59487 39146930
    891534 8x46:B (2.2) BS03 ARG N/A N/A O59487 39146930
    891535 8x47:A (2.8) BS01 SAH N/A N/A O59487 39146930
    891536 8x47:A (2.8) BS02 SO3 N/A N/A O59487 39146930
    891537 8x47:A (2.8) BS03 ARG N/A N/A O59487 39146930
    891538 8x4i:A (3.3) BS01 MTA N/A N/A O59487 39146930
    891539 8x4l:A (2.6) BS01 ZN N/A N/A O59487 39146930
    891540 8x4l:A (2.6) BS02 SO3 N/A N/A O59487 39146930
    891541 8x4l:A (2.6) BS03 SO3 N/A N/A O59487 39146930
    891542 8x4l:A (2.6) BS04 ARG N/A N/A O59487 39146930
    891543 8x4l:B (2.6) BS01 SO3 N/A N/A O59487 39146930
    891544 8x4l:B (2.6) BS02 ZN N/A N/A O59487 39146930
    891545 8x4l:B (2.6) BS03 SO3 N/A N/A O59487 39146930
    891546 8x4l:B (2.6) BS04 ARG N/A N/A O59487 39146930
    891547 8x4o:A (3.0) BS01 MTA N/A N/A O59487 39146930
    891548 8x4o:B (3.0) BS01 MTA N/A N/A O59487 39146930
    891549 8x4p:A (2.6) BS01 SFG N/A N/A O59487 39146930
    891550 8x4p:B (2.6) BS01 SFG N/A N/A O59487 39146930
    891551 8x51:A (2.92) BS01 dna 3.1.-.- GO:0004519 ... J8H9C1 38471529
    891552 8x51:A (2.92) BS02 dna 3.1.-.- GO:0004519 ... J8H9C1 38471529
    891553 8x51:A (2.92) BS03 CA 3.1.-.- GO:0004519 ... J8H9C1 38471529
    891554 8x51:B (2.92) BS01 dna 3.1.-.- GO:0004519 ... J8H9C1 38471529
    891555 8x51:B (2.92) BS02 dna 3.1.-.- GO:0004519 ... J8H9C1 38471529
    891556 8x51:B (2.92) BS03 CA 3.1.-.- GO:0004519 ... J8H9C1 38471529
    891557 8x52:B (2.9) BS01 peptide 3.4.23.- GO:0000045 ... P49768 38843321
    891558 8x52:C (2.9) BS01 CLR ? GO:0000139 ... Q96BI3 38843321
    891559 8x53:B (3.0) BS01 peptide 3.4.23.- GO:0000045 ... P49768 38843321
    891560 8x53:C (3.0) BS01 CLR ? GO:0000139 ... Q96BI3 38843321
    891561 8x53:C (3.0) BS02 CLR ? GO:0000139 ... Q96BI3 38843321
    891562 8x54:B (2.9) BS01 peptide 3.4.23.- GO:0000045 ... P49768 38843321
    891563 8x54:C (2.9) BS01 CLR ? GO:0000139 ... Q96BI3 38843321
    891564 8x54:C (2.9) BS02 CLR ? GO:0000139 ... Q96BI3 38843321
    891565 8x54:C (2.9) BS03 CLR ? GO:0000139 ... Q96BI3 38843321
    891566 8x5b:A (2.84) BS01 PO4 N/A N/A Q9UBH6 39169184
    891567 8x5b:A (2.84) BS02 PO4 N/A N/A Q9UBH6 39169184
    891568 8x5b:A (2.84) BS03 PO4 N/A N/A Q9UBH6 39169184
    891569 8x5b:A (2.84) BS04 PO4 N/A N/A Q9UBH6 39169184
    891570 8x5b:F (2.84) BS01 PO4 N/A N/A Q9UBH6 39169184
    891571 8x5b:F (2.84) BS02 PO4 N/A N/A Q9UBH6 39169184
    891572 8x5b:F (2.84) BS03 PO4 N/A N/A Q9UBH6 39169184
    891573 8x5b:F (2.84) BS04 PO4 N/A N/A Q9UBH6 39169184
    891574 8x5d:G (3.1) BS01 rna 3.1.-.- GO:0003723 ... P9WJF9 38218299
    891575 8x5d:H (3.1) BS01 rna 3.1.-.- GO:0003723 ... P9WJF9 38218299
    891576 8x5d:I (3.1) BS01 rna 3.1.-.- GO:0003723 ... P9WJF9 38218299
    891577 8x5d:J (3.1) BS01 rna 3.1.-.- GO:0003723 ... P9WJF9 38218299
    891578 8x5d:K (3.1) BS01 rna 3.1.-.- GO:0003723 ... P9WJF9 38218299
    891579 8x5d:L (3.1) BS01 rna 3.1.-.- GO:0003723 ... P9WJF9 38218299
    891580 8x5d:N (3.1) BS01 rna ? GO:0003723 ... P9WJF5 38218299
    891581 8x5f:A (2.96) BS01 PO4 N/A GO:0000822 ... Q9UBH6 39169184
    891582 8x5f:A (2.96) BS02 PO4 N/A GO:0000822 ... Q9UBH6 39169184
    891583 8x5f:A (2.96) BS03 PO4 N/A GO:0000822 ... Q9UBH6 39169184
    891584 8x5f:A (2.96) BS04 PO4 N/A GO:0000822 ... Q9UBH6 39169184
    891585 8x5f:A (2.96) BS05 IHP N/A GO:0000822 ... Q9UBH6 39169184
    891586 8x5f:B (2.96) BS01 PO4 N/A GO:0000822 ... Q9UBH6 39169184
    891587 8x5f:B (2.96) BS02 PO4 N/A GO:0000822 ... Q9UBH6 39169184
    891588 8x5f:B (2.96) BS03 PO4 N/A GO:0000822 ... Q9UBH6 39169184
    891589 8x5f:B (2.96) BS04 PO4 N/A GO:0000822 ... Q9UBH6 39169184
    891590 8x5f:B (2.96) BS05 IHP N/A GO:0000822 ... Q9UBH6 39169184
    891591 8x5i:A (3.01) BS01 ATP 3.1.-.- GO:0004519 ... J8H9C1 38471529
    891592 8x5i:A (3.01) BS02 ATP 3.1.-.- GO:0004519 ... J8H9C1 38471529
    891593 8x5i:B (3.01) BS01 ATP 3.1.-.- GO:0004519 ... J8H9C1 38471529
    891594 8x5i:B (3.01) BS02 ATP 3.1.-.- GO:0004519 ... J8H9C1 38471529
    891595 8x5i:C (3.01) BS01 ATP 3.1.-.- GO:0004519 ... J8H9C1 38471529
    891596 8x5i:D (3.01) BS01 ATP 3.1.-.- GO:0004519 ... J8H9C1 38471529
    891597 8x5i:D (3.01) BS02 ATP 3.1.-.- GO:0004519 ... J8H9C1 38471529
    891598 8x5j:A (1.7) BS01 ZN 2.4.2.-
    2.4.2.30    		 GO:0003950 ... O95271 N/A
    891599 8x5j:B (1.7) BS01 ZN 2.4.2.-
    2.4.2.30    		 GO:0003950 ... O95271 N/A
    891600 8x5k:A (1.8) BS01 3YT 2.7.10.2 GO:0004672 ... P43405 N/A
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

    • yangzhanglabumich.edu | (734) 647-1549 | 100 Washtenaw Avenue, Ann Arbor, MI 48109-2218