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●TM-score ●TM-align ●US-align ●MM-align ●RNA-align ●NW-align ●LS-align ●EDTSurf ●MVP ●MVP-Fit ●SPICKER ●HAAD ●PSSpred ●3DRobot ●MR-REX ●I-TASSER-MR ●SVMSEQ ●NeBcon ●ResPRE ●TripletRes ●DeepPotential ●WDL-RF ●ATPbind ●DockRMSD ●DeepMSA ●FASPR ●EM-Refiner ●GPU-I-TASSER

●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
Download all results in tab-seperated text for 903398 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    891201 8wyc:B (3.0) BS01 NAD ? N/A D4G637 38555355
    891202 8wyc:C (3.0) BS01 NAD ? N/A D4G637 38555355
    891203 8wyc:D (3.0) BS01 NAD ? N/A D4G637 38555355
    891204 8wyf:A (2.85) BS01 NAD N/A N/A D4G637 38555355
    891205 8wyf:B (2.85) BS01 NAD N/A N/A D4G637 38555355
    891206 8wyf:C (2.85) BS01 NAD N/A N/A D4G637 38555355
    891207 8wyf:D (2.85) BS01 NAD N/A N/A D4G637 38555355
    891208 8wyg:A (3.13) BS01 XHN ? N/A P25440 38175809
    891209 8wyg:A (3.13) BS02 XHN ? N/A P25440 38175809
    891210 8wyg:B (3.13) BS01 XHN ? N/A P25440 38175809
    891211 8wyg:C (3.13) BS01 XHN ? N/A P25440 38175809
    891212 8wyg:C (3.13) BS02 XHN ? N/A P25440 38175809
    891213 8wyg:D (3.13) BS01 XHN ? N/A P25440 38175809
    891214 8wyi:a (3.9) BS01 peptide ? GO:0004888 ... P20963 38657677
    891215 8wyi:m (3.9) BS01 peptide ? N/A A0JD36
    B7Z8K6
    P01848    		 38657677
    891216 8wyi:n (3.9) BS01 peptide ? GO:0002250 ... P0CF51
    Q99603    		 38657677
    891217 8wyp:A (1.24) BS01 XUK ? N/A O60885 38006801
    891218 8wyp:A (1.24) BS02 XUK ? N/A O60885 38006801
    891219 8wyt:A (2.7) BS01 H8F N/A N/A Q76NL8 N/A
    891220 8wyt:A (2.7) BS02 ZN N/A N/A Q76NL8 N/A
    891221 8wyu:A (3.2) BS01 ZN N/A N/A Q76NL8 N/A
    891222 8wyx:A (3.5) BS01 ZN N/A N/A Q76NL8 N/A
    891223 8wyy:A (3.1) BS01 ZN N/A N/A Q76NL8 N/A
    891224 8wz2:R (2.73) BS01 peptide N/A GO:0004930 ... Q96P65 38830850
    891225 8wzc:A (1.925) BS01 rna N/A N/A O15037 39167961
    891226 8wzc:A (1.925) BS02 MG N/A N/A O15037 39167961
    891227 8wzc:A (1.925) BS03 MG N/A N/A O15037 39167961
    891228 8wzf:A (1.6) BS01 XTX N/A GO:0003796 ... P00698 38951539
    891229 8wzg:A (1.6) BS01 XTX N/A GO:0003796 ... P00698 38951539
    891230 8wzh:A (3.7) BS01 HEM N/A GO:0000302 ... P04040 38935342
    891231 8wzh:A (3.7) BS02 NDP N/A GO:0000302 ... P04040 38935342
    891232 8wzh:B (3.7) BS01 HEM N/A GO:0000302 ... P04040 38935342
    891233 8wzh:B (3.7) BS02 NDP N/A GO:0000302 ... P04040 38935342
    891234 8wzh:C (3.7) BS01 HEM N/A GO:0000302 ... P04040 38935342
    891235 8wzh:C (3.7) BS02 NDP N/A GO:0000302 ... P04040 38935342
    891236 8wzh:D (3.7) BS01 HEM N/A GO:0000302 ... P04040 38935342
    891237 8wzh:D (3.7) BS02 NDP N/A GO:0000302 ... P04040 38935342
    891238 8wzj:A (2.7) BS01 HEM N/A GO:0000302 ... P04040 38935342
    891239 8wzj:A (2.7) BS02 NDP N/A GO:0000302 ... P04040 38935342
    891240 8wzj:B (2.7) BS01 HEM N/A GO:0000302 ... P04040 38935342
    891241 8wzj:B (2.7) BS02 NDP N/A GO:0000302 ... P04040 38935342
    891242 8wzj:C (2.7) BS01 HEM N/A GO:0000302 ... P04040 38935342
    891243 8wzj:C (2.7) BS02 NDP N/A GO:0000302 ... P04040 38935342
    891244 8wzj:D (2.7) BS01 HEM N/A GO:0000302 ... P04040 38935342
    891245 8wzj:D (2.7) BS02 NDP N/A GO:0000302 ... P04040 38935342
    891246 8wzk:A (2.4) BS01 HEM N/A GO:0000302 ... P04040 38935342
    891247 8wzk:A (2.4) BS02 NDP N/A GO:0000302 ... P04040 38935342
    891248 8wzk:B (2.4) BS01 HEM N/A GO:0000302 ... P04040 38935342
    891249 8wzk:B (2.4) BS02 NDP N/A GO:0000302 ... P04040 38935342
    891250 8wzk:C (2.4) BS01 HEM N/A GO:0000302 ... P04040 38935342
    891251 8wzk:C (2.4) BS02 NDP N/A GO:0000302 ... P04040 38935342
    891252 8wzk:D (2.4) BS01 HEM N/A GO:0000302 ... P04040 38935342
    891253 8wzk:D (2.4) BS02 NDP N/A GO:0000302 ... P04040 38935342
    891254 8wzm:A (2.7) BS01 HEM N/A GO:0000302 ... P04040 38935342
    891255 8wzm:A (2.7) BS02 NDP N/A GO:0000302 ... P04040 38935342
    891256 8wzm:B (2.7) BS01 HEM N/A GO:0000302 ... P04040 38935342
    891257 8wzm:B (2.7) BS02 NDP N/A GO:0000302 ... P04040 38935342
    891258 8wzm:C (2.7) BS01 HEM N/A GO:0000302 ... P04040 38935342
    891259 8wzm:C (2.7) BS02 NDP N/A GO:0000302 ... P04040 38935342
    891260 8wzm:D (2.7) BS01 HEM N/A GO:0000302 ... P04040 38935342
    891261 8wzm:D (2.7) BS02 NDP N/A GO:0000302 ... P04040 38935342
    891262 8wzn:A (1.8) BS01 ZN N/A N/A O60260 N/A
    891263 8wzn:A (1.8) BS02 ZN N/A N/A O60260 N/A
    891264 8wzn:A (1.8) BS03 ZN N/A N/A O60260 N/A
    891265 8wzn:A (1.8) BS04 ZN N/A N/A O60260 N/A
    891266 8wzn:A (1.8) BS05 ZN N/A N/A O60260 N/A
    891267 8wzn:A (1.8) BS06 ZN N/A N/A O60260 N/A
    891268 8wzn:A (1.8) BS07 ZN N/A N/A O60260 N/A
    891269 8wzn:A (1.8) BS08 ZN N/A N/A O60260 N/A
    891270 8wzo:A (2.25) BS01 ZN N/A N/A O60260 N/A
    891271 8wzo:A (2.25) BS02 ZN N/A N/A O60260 N/A
    891272 8wzo:A (2.25) BS03 ZN N/A N/A O60260 N/A
    891273 8wzo:A (2.25) BS04 ZN N/A N/A O60260 N/A
    891274 8wzo:A (2.25) BS05 ZN N/A N/A O60260 N/A
    891275 8wzo:A (2.25) BS06 ZN N/A N/A O60260 N/A
    891276 8wzo:A (2.25) BS07 ZN N/A N/A O60260 N/A
    891277 8wzo:A (2.25) BS08 ZN N/A N/A O60260 N/A
    891278 8wzp:B (1.76) BS01 XIU 2.7.7.50
    3.4.19.12
    3.4.22.-
    3.4.22.69    		 GO:0008233 ... P0DTD1 38056159
    891279 8wzq:A (1.66) BS01 XIU 2.1.1.56
    2.1.1.57
    2.7.7.48
    2.7.7.50
    3.1.13.-
    3.4.19.12
    3.4.22.-
    3.4.22.69
    3.6.4.12
    3.6.4.13
    4.6.1.-    		 GO:0008233 ... P0DTD1 38056159
    891280 8wzq:B (1.66) BS01 XIU 2.1.1.56
    2.1.1.57
    2.7.7.48
    2.7.7.50
    3.1.13.-
    3.4.19.12
    3.4.22.-
    3.4.22.69
    3.6.4.12
    3.6.4.13
    4.6.1.-    		 GO:0008233 ... P0DTD1 38056159
    891281 8wzr:A (1.6) BS01 XTX N/A N/A P00698 38951539
    891282 8wzt:A (1.6) BS01 XTX N/A GO:0003796 ... P00698 38951539
    891283 8wzv:A (1.6) BS01 XTX N/A GO:0003796 ... P00698 38951539
    891284 8x01:A (3.01) BS01 ZN 2.1.1.-
    2.1.1.375
    2.7.7.48
    2.7.7.88
    3.6.1.-    		 GO:0001172 ... C0JJA4 38760379
    891285 8x01:A (3.01) BS02 ZN 2.1.1.-
    2.1.1.375
    2.7.7.48
    2.7.7.88
    3.6.1.-    		 GO:0001172 ... C0JJA4 38760379
    891286 8x0v:A (2.4) BS01 XP3 N/A N/A N/A N/A
    891287 8x0v:B (2.4) BS01 XP3 N/A N/A N/A N/A
    891288 8x0v:C (2.4) BS01 XP3 N/A N/A N/A N/A
    891289 8x0v:D (2.4) BS01 XP3 N/A N/A N/A N/A
    891290 8x0v:E (2.4) BS01 XP3 N/A N/A N/A N/A
    891291 8x0v:F (2.4) BS01 XP3 N/A N/A N/A N/A
    891292 8x0v:G (2.4) BS01 XP3 N/A N/A N/A N/A
    891293 8x0v:H (2.4) BS01 XP3 N/A N/A N/A N/A
    891294 8x0v:I (2.4) BS01 XP3 N/A N/A N/A N/A
    891295 8x0v:J (2.4) BS01 XP3 N/A N/A N/A N/A
    891296 8x0v:K (2.4) BS01 XP3 N/A N/A N/A N/A
    891297 8x0v:L (2.4) BS01 XP3 N/A N/A N/A N/A
    891298 8x15:A (3.2) BS01 dna ? GO:0000786 ... Q93077 38331872
    891299 8x15:A (3.2) BS02 dna ? GO:0000786 ... Q93077 38331872
    891300 8x15:B (3.2) BS01 dna ? GO:0000786 ... P62807 38331872
    891301 8x15:B (3.2) BS02 dna ? GO:0000786 ... P62807 38331872
    891302 8x15:C (3.2) BS01 dna ? GO:0000786 ... P68431 38331872
    891303 8x15:C (3.2) BS02 dna ? GO:0000786 ... P68431 38331872
    891304 8x15:D (3.2) BS01 dna ? GO:0000781 ... P62805 38331872
    891305 8x15:E (3.2) BS01 dna ? GO:0000786 ... Q93077 38331872
    891306 8x15:E (3.2) BS02 dna ? GO:0000786 ... Q93077 38331872
    891307 8x15:F (3.2) BS01 dna ? GO:0000786 ... P62807 38331872
    891308 8x15:F (3.2) BS02 dna ? GO:0000786 ... P62807 38331872
    891309 8x15:G (3.2) BS01 dna ? GO:0000786 ... P68431 38331872
    891310 8x15:G (3.2) BS02 dna ? GO:0000786 ... P68431 38331872
    891311 8x15:H (3.2) BS01 dna ? GO:0000781 ... P62805 38331872
    891312 8x15:H (3.2) BS02 dna ? GO:0000781 ... P62805 38331872
    891313 8x15:I (3.2) BS01 dna 3.6.4.- GO:0000786 ... Q6ZRS2 38331872
    891314 8x15:I (3.2) BS02 dna 3.6.4.- GO:0000786 ... Q6ZRS2 38331872
    891315 8x15:J (3.2) BS01 dna ? GO:0000122 ... Q15906 38331872
    891316 8x15:M (3.2) BS01 ADP 3.6.4.12 GO:0000492 ... Q9Y265 38331872
    891317 8x15:N (3.2) BS01 ADP 3.6.4.12 GO:0000492 ... Q9Y230 38331872
    891318 8x15:O (3.2) BS01 ADP 3.6.4.12 GO:0000492 ... Q9Y265 38331872
    891319 8x15:O (3.2) BS02 ADP 3.6.4.12 GO:0000492 ... Q9Y265 38331872
    891320 8x15:P (3.2) BS01 ADP 3.6.4.12 GO:0000492 ... Q9Y230 38331872
    891321 8x15:Q (3.2) BS01 ADP 3.6.4.12 GO:0000492 ... Q9Y265 38331872
    891322 8x15:R (3.2) BS01 ADP 3.6.4.12 GO:0000492 ... Q9Y230 38331872
    891323 8x15:T (3.2) BS01 ATP ? GO:0000723 ... O96019 38331872
    891324 8x15:U (3.2) BS01 ATP 3.6.4.- GO:0000079 ... P60709 38331872
    891325 8x15:V (3.2) BS01 dna ? GO:0000122 ... Q9NPF5 38331872
    891326 8x16:R (3.29) BS01 Q8L ? GO:0001609 ... P0DMS8 38627384
    891327 8x17:R (3.19) BS01 XS0 ? GO:0001609 ... P0DMS8 38627384
    891328 8x19:A (3.2) BS01 dna ? GO:0000786 ... Q93077 38331872
    891329 8x19:A (3.2) BS02 dna ? GO:0000786 ... Q93077 38331872
    891330 8x19:B (3.2) BS01 dna ? GO:0000786 ... P62807 38331872
    891331 8x19:B (3.2) BS02 dna ? GO:0000786 ... P62807 38331872
    891332 8x19:C (3.2) BS01 dna ? GO:0000786 ... P68431 38331872
    891333 8x19:C (3.2) BS02 dna ? GO:0000786 ... P68431 38331872
    891334 8x19:D (3.2) BS01 dna ? GO:0000781 ... P62805 38331872
    891335 8x19:D (3.2) BS02 dna ? GO:0000781 ... P62805 38331872
    891336 8x19:E (3.2) BS01 dna ? GO:0000786 ... Q93077 38331872
    891337 8x19:E (3.2) BS02 dna ? GO:0000786 ... Q93077 38331872
    891338 8x19:F (3.2) BS01 dna ? GO:0000786 ... P62807 38331872
    891339 8x19:F (3.2) BS02 dna ? GO:0000786 ... P62807 38331872
    891340 8x19:G (3.2) BS01 dna ? GO:0000786 ... P68431 38331872
    891341 8x19:G (3.2) BS02 dna ? GO:0000786 ... P68431 38331872
    891342 8x19:H (3.2) BS01 dna ? GO:0000781 ... P62805 38331872
    891343 8x19:H (3.2) BS02 dna ? GO:0000781 ... P62805 38331872
    891344 8x19:I (3.2) BS01 dna 3.6.4.- GO:0000786 ... Q6ZRS2 38331872
    891345 8x19:I (3.2) BS02 dna 3.6.4.- GO:0000786 ... Q6ZRS2 38331872
    891346 8x19:I (3.2) BS03 ADP 3.6.4.- GO:0000786 ... Q6ZRS2 38331872
    891347 8x19:I (3.2) BS04 BEF 3.6.4.- GO:0000786 ... Q6ZRS2 38331872
    891348 8x19:M (3.2) BS01 ADP 3.6.4.12 GO:0000492 ... Q9Y265 38331872
    891349 8x19:N (3.2) BS01 ADP 3.6.4.12 GO:0000492 ... Q9Y230 38331872
    891350 8x19:O (3.2) BS01 ADP 3.6.4.12 GO:0000492 ... Q9Y265 38331872
    891351 8x19:P (3.2) BS01 ADP 3.6.4.12 GO:0000492 ... Q9Y230 38331872
    891352 8x19:Q (3.2) BS01 ADP 3.6.4.12 GO:0000492 ... Q9Y265 38331872
    891353 8x19:R (3.2) BS01 ADP 3.6.4.12 GO:0000492 ... Q9Y230 38331872
    891354 8x19:T (3.2) BS01 ATP ? GO:0000723 ... O96019 38331872
    891355 8x19:U (3.2) BS01 ATP 3.6.4.- GO:0000079 ... P60709 38331872
    891356 8x19:V (3.2) BS01 dna ? GO:0000122 ... Q9NPF5 38331872
    891357 8x1a:B (1.604) BS01 G6P ? GO:0015888 ... A0A0H3AFK0 38704889
    891358 8x1c:A (3.2) BS01 dna ? GO:0000786 ... Q93077 38331872
    891359 8x1c:A (3.2) BS02 dna ? GO:0000786 ... Q93077 38331872
    891360 8x1c:B (3.2) BS01 dna ? GO:0000786 ... P62807 38331872
    891361 8x1c:B (3.2) BS02 dna ? GO:0000786 ... P62807 38331872
    891362 8x1c:C (3.2) BS01 dna ? GO:0000786 ... P68431 38331872
    891363 8x1c:C (3.2) BS02 dna ? GO:0000786 ... P68431 38331872
    891364 8x1c:D (3.2) BS01 dna ? GO:0000781 ... P62805 38331872
    891365 8x1c:D (3.2) BS02 dna ? GO:0000781 ... P62805 38331872
    891366 8x1c:E (3.2) BS01 dna ? GO:0000786 ... Q93077 38331872
    891367 8x1c:E (3.2) BS02 dna ? GO:0000786 ... Q93077 38331872
    891368 8x1c:F (3.2) BS01 dna ? GO:0000786 ... P62807 38331872
    891369 8x1c:F (3.2) BS02 dna ? GO:0000786 ... P62807 38331872
    891370 8x1c:G (3.2) BS01 dna ? GO:0000786 ... P68431 38331872
    891371 8x1c:G (3.2) BS02 dna ? GO:0000786 ... P68431 38331872
    891372 8x1c:H (3.2) BS01 dna ? GO:0000781 ... P62805 38331872
    891373 8x1c:I (3.2) BS01 dna 3.6.4.- GO:0000786 ... Q6ZRS2 38331872
    891374 8x1c:I (3.2) BS02 dna 3.6.4.- GO:0000786 ... Q6ZRS2 38331872
    891375 8x1c:I (3.2) BS03 ADP 3.6.4.- GO:0000786 ... Q6ZRS2 38331872
    891376 8x1c:K (3.2) BS01 ATP ? GO:0000786 ... Q9GZN1 38331872
    891377 8x1c:L (3.2) BS01 dna ? GO:0000786 ... O43257 38331872
    891378 8x1c:M (3.2) BS01 ADP 3.6.4.12 GO:0000492 ... Q9Y265 38331872
    891379 8x1c:N (3.2) BS01 ADP 3.6.4.12 GO:0000492 ... Q9Y230 38331872
    891380 8x1c:O (3.2) BS01 ADP 3.6.4.12 GO:0000492 ... Q9Y265 38331872
    891381 8x1c:P (3.2) BS01 ADP 3.6.4.12 GO:0000492 ... Q9Y230 38331872
    891382 8x1c:Q (3.2) BS01 ADP 3.6.4.12 GO:0000492 ... Q9Y265 38331872
    891383 8x1c:R (3.2) BS01 ADP 3.6.4.12 GO:0000492 ... Q9Y230 38331872
    891384 8x1c:S (3.2) BS01 dna 3.6.4.- GO:0000079 ... P60709 38331872
    891385 8x1c:T (3.2) BS01 ATP ? GO:0000723 ... O96019 38331872
    891386 8x1c:U (3.2) BS01 ATP 3.6.4.- GO:0000079 ... P60709 38331872
    891387 8x1c:V (3.2) BS01 dna ? GO:0000122 ... Q9NPF5 38331872
    891388 8x1c:W (3.2) BS01 dna ? GO:0000278 ... O95619 38331872
    891389 8x1f:A (2.3) BS01 PLP ? GO:0003824 ... Q0C8G1 N/A
    891390 8x1f:B (2.3) BS01 PLP ? GO:0003824 ... Q0C8G1 N/A
    891391 8x1n:A (3.31) BS01 ZN ? GO:0005615 ... P02771 38678117
    891392 8x1w:A (2.1) BS01 HEM N/A N/A Q6WG30 N/A
    891393 8x1z:A (2.62) BS01 dna N/A N/A P12497 38977798
    891394 8x1z:A (2.62) BS02 MG N/A N/A P12497 38977798
    891395 8x1z:A (2.62) BS03 XTE N/A N/A P12497 38977798
    891396 8x1z:B (2.62) BS01 dna N/A N/A P12497 38977798
    891397 8x1z:C (2.62) BS01 dna N/A N/A P12497 38977798
    891398 8x1z:C (2.62) BS02 MG N/A N/A P12497 38977798
    891399 8x1z:C (2.62) BS03 XTE N/A N/A P12497 38977798
    891400 8x20:A (2.7) BS01 dna N/A N/A P12497 38977798
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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