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●TM-score ●TM-align ●US-align ●MM-align ●RNA-align ●NW-align ●LS-align ●EDTSurf ●MVP ●MVP-Fit ●SPICKER ●HAAD ●PSSpred ●3DRobot ●MR-REX ●I-TASSER-MR ●SVMSEQ ●NeBcon ●ResPRE ●TripletRes ●DeepPotential ●WDL-RF ●ATPbind ●DockRMSD ●DeepMSA ●FASPR ●EM-Refiner ●GPU-I-TASSER

●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
Download all results in tab-seperated text for 903398 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    888801 8wmj:J (3.0) BS05 CLA ? GO:0009507 ... A6MVU6 38734819
    888802 8wmj:J (3.0) BS06 WVN ? GO:0009507 ... A6MVU6 38734819
    888803 8wmj:J (3.0) BS07 WVN ? GO:0009507 ... A6MVU6 38734819
    888804 8wmj:J (3.0) BS08 CLA ? GO:0009507 ... A6MVU6 38734819
    888805 8wmj:J (3.0) BS09 II0 ? GO:0009507 ... A6MVU6 38734819
    888806 8wmj:J (3.0) BS10 CLA ? GO:0009507 ... A6MVU6 38734819
    888807 8wmj:J (3.0) BS11 CLA ? GO:0009507 ... A6MVU6 38734819
    888808 8wmj:K (3.0) BS01 CLA ? GO:0009507 ... A6MVS9 38734819
    888809 8wmj:K (3.0) BS02 CLA ? GO:0009507 ... A6MVS9 38734819
    888810 8wmj:K (3.0) BS03 CLA ? GO:0009507 ... A6MVS9 38734819
    888811 8wmj:K (3.0) BS04 WVN ? GO:0009507 ... A6MVS9 38734819
    888812 8wmj:K (3.0) BS05 CLA ? GO:0009507 ... A6MVS9 38734819
    888813 8wmj:K (3.0) BS06 CLA ? GO:0009507 ... A6MVS9 38734819
    888814 8wmj:K (3.0) BS07 WVN ? GO:0009507 ... A6MVS9 38734819
    888815 8wmj:L (3.0) BS01 CLA ? GO:0009507 ... A6MVV8 38734819
    888816 8wmj:L (3.0) BS02 CLA ? GO:0009507 ... A6MVV8 38734819
    888817 8wmj:L (3.0) BS03 CLA ? GO:0009507 ... A6MVV8 38734819
    888818 8wmj:L (3.0) BS04 CLA ? GO:0009507 ... A6MVV8 38734819
    888819 8wmj:L (3.0) BS05 CLA ? GO:0009507 ... A6MVV8 38734819
    888820 8wmj:L (3.0) BS06 WVN ? GO:0009507 ... A6MVV8 38734819
    888821 8wmj:L (3.0) BS07 CLA ? GO:0009507 ... A6MVV8 38734819
    888822 8wmj:L (3.0) BS08 CLA ? GO:0009507 ... A6MVV8 38734819
    888823 8wmj:L (3.0) BS09 CLA ? GO:0009507 ... A6MVV8 38734819
    888824 8wmj:L (3.0) BS10 WVN ? GO:0009507 ... A6MVV8 38734819
    888825 8wmj:L (3.0) BS11 CLA ? GO:0009507 ... A6MVV8 38734819
    888826 8wmj:M (3.0) BS01 CLA ? GO:0009507 ... A6MVT4 38734819
    888827 8wmj:M (3.0) BS02 WVN ? GO:0009507 ... A6MVT4 38734819
    888828 8wmj:Q (3.0) BS01 CLA N/A N/A N/A 38734819
    888829 8wmj:Q (3.0) BS02 CLA N/A N/A N/A 38734819
    888830 8wmj:Q (3.0) BS03 CLA N/A N/A N/A 38734819
    888831 8wmj:Q (3.0) BS04 CLA N/A N/A N/A 38734819
    888832 8wmj:R (3.0) BS01 CLA N/A N/A N/A 38734819
    888833 8wmj:R (3.0) BS02 CLA N/A N/A N/A 38734819
    888834 8wmj:R (3.0) BS03 CLA N/A N/A N/A 38734819
    888835 8wmj:R (3.0) BS04 WVN N/A N/A N/A 38734819
    888836 8wmj:R (3.0) BS05 CLA N/A N/A N/A 38734819
    888837 8wmj:R (3.0) BS06 IHT N/A N/A N/A 38734819
    888838 8wmj:a (3.0) BS01 CLA N/A N/A N/A 38734819
    888839 8wmj:a (3.0) BS02 CLA N/A N/A N/A 38734819
    888840 8wmj:a (3.0) BS03 CLA N/A N/A N/A 38734819
    888841 8wmj:a (3.0) BS04 CLA N/A N/A N/A 38734819
    888842 8wmj:a (3.0) BS05 CLA N/A N/A N/A 38734819
    888843 8wmj:a (3.0) BS06 CLA N/A N/A N/A 38734819
    888844 8wmj:a (3.0) BS07 CLA N/A N/A N/A 38734819
    888845 8wmj:a (3.0) BS08 CLA N/A N/A N/A 38734819
    888846 8wmj:a (3.0) BS09 CLA N/A N/A N/A 38734819
    888847 8wmj:a (3.0) BS10 CLA N/A N/A N/A 38734819
    888848 8wmj:a (3.0) BS11 CLA N/A N/A N/A 38734819
    888849 8wmj:a (3.0) BS12 CLA N/A N/A N/A 38734819
    888850 8wmj:a (3.0) BS13 II0 N/A N/A N/A 38734819
    888851 8wmj:a (3.0) BS14 II0 N/A N/A N/A 38734819
    888852 8wmj:a (3.0) BS15 II0 N/A N/A N/A 38734819
    888853 8wmj:a (3.0) BS16 IHT N/A N/A N/A 38734819
    888854 8wmj:a (3.0) BS17 II0 N/A N/A N/A 38734819
    888855 8wmj:a (3.0) BS18 CLA N/A N/A N/A 38734819
    888856 8wmj:b (3.0) BS01 CLA N/A N/A N/A 38734819
    888857 8wmj:b (3.0) BS02 CLA N/A N/A N/A 38734819
    888858 8wmj:b (3.0) BS03 KC2 N/A N/A N/A 38734819
    888859 8wmj:b (3.0) BS04 CLA N/A N/A N/A 38734819
    888860 8wmj:b (3.0) BS05 CLA N/A N/A N/A 38734819
    888861 8wmj:b (3.0) BS06 CLA N/A N/A N/A 38734819
    888862 8wmj:b (3.0) BS07 CLA N/A N/A N/A 38734819
    888863 8wmj:b (3.0) BS08 CLA N/A N/A N/A 38734819
    888864 8wmj:b (3.0) BS09 CLA N/A N/A N/A 38734819
    888865 8wmj:b (3.0) BS10 CLA N/A N/A N/A 38734819
    888866 8wmj:b (3.0) BS11 CLA N/A N/A N/A 38734819
    888867 8wmj:b (3.0) BS12 CLA N/A N/A N/A 38734819
    888868 8wmj:b (3.0) BS13 CLA N/A N/A N/A 38734819
    888869 8wmj:b (3.0) BS14 CLA N/A N/A N/A 38734819
    888870 8wmj:b (3.0) BS15 CLA N/A N/A N/A 38734819
    888871 8wmj:b (3.0) BS16 CLA N/A N/A N/A 38734819
    888872 8wmj:b (3.0) BS17 II0 N/A N/A N/A 38734819
    888873 8wmj:b (3.0) BS18 II0 N/A N/A N/A 38734819
    888874 8wmj:b (3.0) BS19 IHT N/A N/A N/A 38734819
    888875 8wmj:b (3.0) BS20 IHT N/A N/A N/A 38734819
    888876 8wmj:b (3.0) BS21 II0 N/A N/A N/A 38734819
    888877 8wmj:c (3.0) BS01 CLA N/A N/A N/A 38734819
    888878 8wmj:c (3.0) BS02 CLA N/A N/A N/A 38734819
    888879 8wmj:c (3.0) BS03 CLA N/A N/A N/A 38734819
    888880 8wmj:c (3.0) BS04 CLA N/A N/A N/A 38734819
    888881 8wmj:c (3.0) BS05 CLA N/A N/A N/A 38734819
    888882 8wmj:c (3.0) BS06 CLA N/A N/A N/A 38734819
    888883 8wmj:c (3.0) BS07 CLA N/A N/A N/A 38734819
    888884 8wmj:c (3.0) BS08 CLA N/A N/A N/A 38734819
    888885 8wmj:c (3.0) BS09 CLA N/A N/A N/A 38734819
    888886 8wmj:c (3.0) BS10 KC2 N/A N/A N/A 38734819
    888887 8wmj:c (3.0) BS11 CLA N/A N/A N/A 38734819
    888888 8wmj:c (3.0) BS12 CLA N/A N/A N/A 38734819
    888889 8wmj:c (3.0) BS13 II0 N/A N/A N/A 38734819
    888890 8wmj:c (3.0) BS14 II0 N/A N/A N/A 38734819
    888891 8wmj:c (3.0) BS15 II0 N/A N/A N/A 38734819
    888892 8wmj:c (3.0) BS16 IHT N/A N/A N/A 38734819
    888893 8wmj:c (3.0) BS17 II0 N/A N/A N/A 38734819
    888894 8wmj:c (3.0) BS18 CLA N/A N/A N/A 38734819
    888895 8wmj:c (3.0) BS19 IHT N/A N/A N/A 38734819
    888896 8wmj:c (3.0) BS20 IHT N/A N/A N/A 38734819
    888897 8wmj:d (3.0) BS01 CLA N/A N/A N/A 38734819
    888898 8wmj:d (3.0) BS02 II0 N/A N/A N/A 38734819
    888899 8wmj:d (3.0) BS03 CLA N/A N/A N/A 38734819
    888900 8wmj:d (3.0) BS04 CLA N/A N/A N/A 38734819
    888901 8wmj:d (3.0) BS05 CLA N/A N/A N/A 38734819
    888902 8wmj:d (3.0) BS06 CLA N/A N/A N/A 38734819
    888903 8wmj:d (3.0) BS07 CLA N/A N/A N/A 38734819
    888904 8wmj:d (3.0) BS08 CLA N/A N/A N/A 38734819
    888905 8wmj:d (3.0) BS09 CLA N/A N/A N/A 38734819
    888906 8wmj:d (3.0) BS10 CLA N/A N/A N/A 38734819
    888907 8wmj:d (3.0) BS11 CLA N/A N/A N/A 38734819
    888908 8wmj:d (3.0) BS12 KC2 N/A N/A N/A 38734819
    888909 8wmj:d (3.0) BS13 KC2 N/A N/A N/A 38734819
    888910 8wmj:d (3.0) BS14 CLA N/A N/A N/A 38734819
    888911 8wmj:d (3.0) BS15 II0 N/A N/A N/A 38734819
    888912 8wmj:d (3.0) BS16 II0 N/A N/A N/A 38734819
    888913 8wmj:d (3.0) BS17 II0 N/A N/A N/A 38734819
    888914 8wmj:d (3.0) BS18 II0 N/A N/A N/A 38734819
    888915 8wmj:h (3.0) BS01 CLA N/A N/A N/A 38734819
    888916 8wmj:h (3.0) BS02 CLA N/A N/A N/A 38734819
    888917 8wmj:h (3.0) BS03 CLA N/A N/A N/A 38734819
    888918 8wmj:h (3.0) BS04 CLA N/A N/A N/A 38734819
    888919 8wmj:h (3.0) BS05 CLA N/A N/A N/A 38734819
    888920 8wmj:h (3.0) BS06 CLA N/A N/A N/A 38734819
    888921 8wmj:h (3.0) BS07 CLA N/A N/A N/A 38734819
    888922 8wmj:h (3.0) BS08 CLA N/A N/A N/A 38734819
    888923 8wmj:h (3.0) BS09 II0 N/A N/A N/A 38734819
    888924 8wmj:h (3.0) BS10 II0 N/A N/A N/A 38734819
    888925 8wmj:h (3.0) BS11 II0 N/A N/A N/A 38734819
    888926 8wmj:h (3.0) BS12 CLA N/A N/A N/A 38734819
    888927 8wmj:h (3.0) BS13 CLA N/A N/A N/A 38734819
    888928 8wmj:i (3.0) BS01 CLA N/A N/A N/A 38734819
    888929 8wmj:i (3.0) BS02 CLA N/A N/A N/A 38734819
    888930 8wmj:i (3.0) BS03 CLA N/A N/A N/A 38734819
    888931 8wmj:i (3.0) BS04 CLA N/A N/A N/A 38734819
    888932 8wmj:i (3.0) BS05 CLA N/A N/A N/A 38734819
    888933 8wmj:i (3.0) BS06 CLA N/A N/A N/A 38734819
    888934 8wmj:i (3.0) BS07 CLA N/A N/A N/A 38734819
    888935 8wmj:i (3.0) BS08 CLA N/A N/A N/A 38734819
    888936 8wmj:i (3.0) BS09 KC2 N/A N/A N/A 38734819
    888937 8wmj:i (3.0) BS10 CLA N/A N/A N/A 38734819
    888938 8wmj:i (3.0) BS11 CLA N/A N/A N/A 38734819
    888939 8wmj:i (3.0) BS12 II0 N/A N/A N/A 38734819
    888940 8wmj:i (3.0) BS13 II0 N/A N/A N/A 38734819
    888941 8wmj:i (3.0) BS14 II0 N/A N/A N/A 38734819
    888942 8wmj:i (3.0) BS15 WVN N/A N/A N/A 38734819
    888943 8wmj:i (3.0) BS16 II0 N/A N/A N/A 38734819
    888944 8wmj:i (3.0) BS17 KC2 N/A N/A N/A 38734819
    888945 8wmj:i (3.0) BS18 II0 N/A N/A N/A 38734819
    888946 8wmj:i (3.0) BS19 CLA N/A N/A N/A 38734819
    888947 8wmj:i (3.0) BS20 CLA N/A N/A N/A 38734819
    888948 8wmj:i (3.0) BS21 CLA N/A N/A N/A 38734819
    888949 8wmj:i (3.0) BS22 CLA N/A N/A N/A 38734819
    888950 8wmj:j (3.0) BS01 CLA N/A N/A N/A 38734819
    888951 8wmj:j (3.0) BS02 II0 N/A N/A N/A 38734819
    888952 8wmj:j (3.0) BS03 WVN N/A N/A N/A 38734819
    888953 8wmj:j (3.0) BS04 II0 N/A N/A N/A 38734819
    888954 8wmj:j (3.0) BS05 CLA N/A N/A N/A 38734819
    888955 8wmj:j (3.0) BS06 CLA N/A N/A N/A 38734819
    888956 8wmj:j (3.0) BS07 CLA N/A N/A N/A 38734819
    888957 8wmj:j (3.0) BS08 CLA N/A N/A N/A 38734819
    888958 8wmj:j (3.0) BS09 CLA N/A N/A N/A 38734819
    888959 8wmj:j (3.0) BS10 CLA N/A N/A N/A 38734819
    888960 8wmj:j (3.0) BS11 CLA N/A N/A N/A 38734819
    888961 8wmj:j (3.0) BS12 CLA N/A N/A N/A 38734819
    888962 8wmj:j (3.0) BS13 CLA N/A N/A N/A 38734819
    888963 8wmj:j (3.0) BS14 KC2 N/A N/A N/A 38734819
    888964 8wmj:j (3.0) BS15 CLA N/A N/A N/A 38734819
    888965 8wmj:j (3.0) BS16 CLA N/A N/A N/A 38734819
    888966 8wmj:j (3.0) BS17 II0 N/A N/A N/A 38734819
    888967 8wmj:j (3.0) BS18 II0 N/A N/A N/A 38734819
    888968 8wmj:j (3.0) BS19 II0 N/A N/A N/A 38734819
    888969 8wmj:j (3.0) BS20 IHT N/A N/A N/A 38734819
    888970 8wmj:k (3.0) BS01 CLA N/A N/A N/A 38734819
    888971 8wmj:k (3.0) BS02 CLA N/A N/A N/A 38734819
    888972 8wmj:k (3.0) BS03 CLA N/A N/A N/A 38734819
    888973 8wmj:k (3.0) BS04 CLA N/A N/A N/A 38734819
    888974 8wmj:k (3.0) BS05 CLA N/A N/A N/A 38734819
    888975 8wmj:k (3.0) BS06 CLA N/A N/A N/A 38734819
    888976 8wmj:k (3.0) BS07 CLA N/A N/A N/A 38734819
    888977 8wmj:k (3.0) BS08 CLA N/A N/A N/A 38734819
    888978 8wmj:k (3.0) BS09 CLA N/A N/A N/A 38734819
    888979 8wmj:k (3.0) BS10 CLA N/A N/A N/A 38734819
    888980 8wmj:k (3.0) BS11 KC2 N/A N/A N/A 38734819
    888981 8wmj:k (3.0) BS12 KC2 N/A N/A N/A 38734819
    888982 8wmj:k (3.0) BS13 KC2 N/A N/A N/A 38734819
    888983 8wmj:k (3.0) BS14 CLA N/A N/A N/A 38734819
    888984 8wmj:k (3.0) BS15 II0 N/A N/A N/A 38734819
    888985 8wmj:k (3.0) BS16 II0 N/A N/A N/A 38734819
    888986 8wmj:k (3.0) BS17 II0 N/A N/A N/A 38734819
    888987 8wmj:k (3.0) BS18 IHT N/A N/A N/A 38734819
    888988 8wmj:k (3.0) BS19 II0 N/A N/A N/A 38734819
    888989 8wmj:k (3.0) BS20 CLA N/A N/A N/A 38734819
    888990 8wmj:k (3.0) BS21 II0 N/A N/A N/A 38734819
    888991 8wmj:k (3.0) BS22 IHT N/A N/A N/A 38734819
    888992 8wmj:l (3.0) BS01 CLA N/A N/A N/A 38734819
    888993 8wmj:l (3.0) BS02 CLA N/A N/A N/A 38734819
    888994 8wmj:l (3.0) BS03 II0 N/A N/A N/A 38734819
    888995 8wmj:l (3.0) BS04 WVN N/A N/A N/A 38734819
    888996 8wmj:l (3.0) BS05 CLA N/A N/A N/A 38734819
    888997 8wmj:l (3.0) BS06 CLA N/A N/A N/A 38734819
    888998 8wmj:l (3.0) BS07 CLA N/A N/A N/A 38734819
    888999 8wmj:l (3.0) BS08 CLA N/A N/A N/A 38734819
    889000 8wmj:l (3.0) BS09 CLA N/A N/A N/A 38734819
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023)(download the PDF file).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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