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●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
Download all results in tab-seperated text for 903398 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    887401 8whb:H (3.17) BS01 dna ? GO:0000786 ... O23629 38413824
    887402 8whb:H (3.17) BS02 dna ? GO:0000786 ... O23629 38413824
    887403 8whg:B (2.71) BS01 NAP N/A N/A D9X416 N/A
    887404 8whg:E (2.71) BS01 NAP N/A N/A D9X416 N/A
    887405 8whg:F (2.71) BS01 NAP N/A N/A D9X416 N/A
    887406 8who:A (1.892) BS01 CO N/A N/A P93836 N/A
    887407 8who:A (1.892) BS02 WHO N/A N/A P93836 N/A
    887408 8whp:A (1.919) BS01 CO N/A N/A P93836 N/A
    887409 8whp:A (1.919) BS02 WI0 N/A N/A P93836 N/A
    887410 8whq:A (1.695) BS01 CO N/A N/A P93836 N/A
    887411 8whq:A (1.695) BS02 WI9 N/A N/A P93836 N/A
    887412 8whs:D (3.33) BS01 ZN N/A N/A Q9BYF1 39071099
    887413 8whu:D (3.3) BS01 ZN N/A N/A Q9BYF1 39071099
    887414 8whu:E (3.3) BS01 ZN N/A N/A Q9BYF1 39071099
    887415 8whx:1 (2.8) BS01 rna ? GO:0003735 ... A0QV03 38245551
    887416 8whx:2 (2.8) BS01 rna ? GO:0003735 ... A0QSD9 38245551
    887417 8whx:3 (2.8) BS01 rna ? GO:0003735 ... A0QSG7 38245551
    887418 8whx:3 (2.8) BS02 rna ? GO:0003735 ... A0QSG7 38245551
    887419 8whx:4 (2.8) BS01 rna ? GO:0003735 ... A0R215 38245551
    887420 8whx:5 (2.8) BS01 rna ? GO:0003735 ... A0R3I9 38245551
    887421 8whx:6 (2.8) BS01 rna ? GO:0003735 ... A0QS39 38245551
    887422 8whx:7 (2.8) BS01 rna ? GO:0003735 ... A0R7K0 38245551
    887423 8whx:8 (2.8) BS01 rna ? GO:0003735 ... A0QYU7 38245551
    887424 8whx:E (2.8) BS01 rna ? GO:0002181 ... A0QSD4 38245551
    887425 8whx:F (2.8) BS01 rna ? GO:0003735 ... A0QSD1 38245551
    887426 8whx:G (2.8) BS01 rna ? GO:0003735 ... A0QSD2 38245551
    887427 8whx:H (2.8) BS01 rna ? GO:0000049 ... A0QSG1 38245551
    887428 8whx:H (2.8) BS02 rna ? GO:0000049 ... A0QSG1 38245551
    887429 8whx:I (2.8) BS01 rna ? GO:0002181 ... A0QSG4 38245551
    887430 8whx:J (2.8) BS01 rna ? GO:0003735 ... A0R7F6 38245551
    887431 8whx:M (2.8) BS01 rna ? GO:0003729 ... A0QSP8 38245551
    887432 8whx:N (2.8) BS01 rna ? GO:0003735 ... A0QSF9 38245551
    887433 8whx:N (2.8) BS02 rna ? GO:0003735 ... A0QSF9 38245551
    887434 8whx:O (2.8) BS01 rna ? GO:0003735 ... A0QSG8 38245551
    887435 8whx:Q (2.8) BS01 rna ? GO:0003735 ... A0QSL9 38245551
    887436 8whx:R (2.8) BS01 rna ? GO:0003735 ... A0QSG5 38245551
    887437 8whx:R (2.8) BS02 rna ? GO:0003735 ... A0QSG5 38245551
    887438 8whx:S (2.8) BS01 rna ? GO:0003735 ... A0QV42 38245551
    887439 8whx:S (2.8) BS02 rna ? GO:0003735 ... A0QV42 38245551
    887440 8whx:T (2.8) BS01 rna ? GO:0000027 ... A0QYU6 38245551
    887441 8whx:U (2.8) BS01 rna ? GO:0003723 ... A0R151 38245551
    887442 8whx:V (2.8) BS01 rna ? GO:0003735 ... A0QSD6 38245551
    887443 8whx:W (2.8) BS01 rna ? GO:0000027 ... A0QSD3 38245551
    887444 8whx:X (2.8) BS01 rna ? GO:0003723 ... A0QSG0 38245551
    887445 8whx:Z (2.8) BS01 rna ? GO:0003735 ... A0R150 38245551
    887446 8whx:c (2.8) BS01 rna ? GO:0003735 ... A0QVB8 38245551
    887447 8whx:d (2.8) BS01 rna ? GO:0003676 ... A0QSD7 38245551
    887448 8whx:e (2.8) BS01 rna ? GO:0003723 ... A0QSL7 38245551
    887449 8whx:f (2.8) BS01 rna ? GO:0003723 ... A0QSG6 38245551
    887450 8whx:g (2.8) BS01 rna ? GO:0003735 ... N/A 38245551
    887451 8whx:g (2.8) BS02 rna ? GO:0003735 ... N/A 38245551
    887452 8whx:h (2.8) BS01 rna ? GO:0000028 ... A0QS97 38245551
    887453 8whx:i (2.8) BS01 rna ? GO:0003735 ... A0QSG3 38245551
    887454 8whx:j (2.8) BS01 rna ? GO:0003723 ... A0QSP9 38245551
    887455 8whx:k (2.8) BS01 rna ? GO:0000049 ... A0QSD0 38245551
    887456 8whx:l (2.8) BS01 rna ? GO:0003735 ... A0QSL6 38245551
    887457 8whx:m (2.8) BS01 rna ? GO:0000049 ... A0QS96 38245551
    887458 8whx:n (2.8) BS01 rna ? GO:0000049 ... A0QSL5 38245551
    887459 8whx:o (2.8) BS01 rna ? GO:0003735 ... A0R550 38245551
    887460 8whx:p (2.8) BS01 rna ? GO:0003735 ... A0QVQ3 38245551
    887461 8whx:p (2.8) BS02 rna ? GO:0003735 ... A0QVQ3 38245551
    887462 8whx:q (2.8) BS01 rna ? GO:0003735 ... A0QV37 38245551
    887463 8whx:r (2.8) BS01 rna ? GO:0003735 ... A0QSE0 38245551
    887464 8whx:s (2.8) BS01 rna ? GO:0003735 ... A0R7F7 38245551
    887465 8whx:t (2.8) BS01 rna ? GO:0000028 ... A0QSD5 38245551
    887466 8whx:u (2.8) BS01 rna ? GO:0003723 ... A0R102 38245551
    887467 8whx:v (2.8) BS01 rna ? N/A A0QR10 38245551
    887468 8whx:w (2.8) BS01 rna ? GO:0006417 ... A0QZ86 38245551
    887469 8why:1 (2.7) BS01 rna ? GO:0003735 ... A0QV03 38245551
    887470 8why:2 (2.7) BS01 rna ? GO:0003735 ... A0QSD9 38245551
    887471 8why:3 (2.7) BS01 rna ? GO:0003735 ... A0QSG7 38245551
    887472 8why:3 (2.7) BS02 rna ? GO:0003735 ... A0QSG7 38245551
    887473 8why:4 (2.7) BS01 rna ? GO:0003735 ... A0R215 38245551
    887474 8why:5 (2.7) BS01 rna ? GO:0003735 ... A0R3I9 38245551
    887475 8why:6 (2.7) BS01 rna ? GO:0003735 ... A0QS39 38245551
    887476 8why:7 (2.7) BS01 rna ? GO:0003735 ... A0R7K0 38245551
    887477 8why:8 (2.7) BS01 rna ? GO:0003735 ... A0QYU7 38245551
    887478 8why:E (2.7) BS01 rna ? GO:0002181 ... A0QSD4 38245551
    887479 8why:F (2.7) BS01 rna ? GO:0003735 ... A0QSD1 38245551
    887480 8why:G (2.7) BS01 rna ? GO:0003735 ... A0QSD2 38245551
    887481 8why:H (2.7) BS01 rna ? GO:0000049 ... A0QSG1 38245551
    887482 8why:H (2.7) BS02 rna ? GO:0000049 ... A0QSG1 38245551
    887483 8why:I (2.7) BS01 rna ? GO:0002181 ... A0QSG4 38245551
    887484 8why:J (2.7) BS01 rna ? GO:0003735 ... A0R7F6 38245551
    887485 8why:M (2.7) BS01 rna ? GO:0003729 ... A0QSP8 38245551
    887486 8why:N (2.7) BS01 rna ? GO:0003735 ... A0QSF9 38245551
    887487 8why:O (2.7) BS01 rna ? GO:0003735 ... A0QSG8 38245551
    887488 8why:Q (2.7) BS01 rna ? GO:0003735 ... A0QSL9 38245551
    887489 8why:R (2.7) BS01 rna ? GO:0003735 ... A0QSG5 38245551
    887490 8why:R (2.7) BS02 rna ? GO:0003735 ... A0QSG5 38245551
    887491 8why:S (2.7) BS01 rna ? GO:0003735 ... A0QV42 38245551
    887492 8why:T (2.7) BS01 rna ? GO:0000027 ... A0QYU6 38245551
    887493 8why:U (2.7) BS01 rna ? GO:0003723 ... A0R151 38245551
    887494 8why:V (2.7) BS01 rna ? GO:0003735 ... A0QSD6 38245551
    887495 8why:W (2.7) BS01 rna ? GO:0000027 ... A0QSD3 38245551
    887496 8why:X (2.7) BS01 rna ? GO:0003723 ... A0QSG0 38245551
    887497 8why:Z (2.7) BS01 rna ? GO:0003735 ... A0R150 38245551
    887498 8why:Z (2.7) BS02 rna ? GO:0003735 ... A0R150 38245551
    887499 8whz:A (3.93) BS01 ZN N/A N/A Q9BYF1 39071099
    887500 8wi0:A (2.93) BS01 peptide N/A GO:0005524 ... O15440 38844452
    887501 8wi2:A (4.06) BS01 peptide N/A GO:0005524 ... O15440 38844452
    887502 8wi5:A (3.46) BS01 peptide N/A GO:0005524 ... O15440 38844452
    887503 8wi6:A (1.916) BS01 CO N/A N/A P93836 N/A
    887504 8wi6:A (1.916) BS02 N1K N/A N/A P93836 N/A
    887505 8wi7:1 (3.5) BS01 rna ? GO:0003735 ... A0QV03 38245551
    887506 8wi7:2 (3.5) BS01 rna ? GO:0003735 ... A0QSD9 38245551
    887507 8wi7:3 (3.5) BS01 rna ? GO:0003735 ... A0QSG7 38245551
    887508 8wi7:3 (3.5) BS02 rna ? GO:0003735 ... A0QSG7 38245551
    887509 8wi7:4 (3.5) BS01 rna ? GO:0003735 ... A0R215 38245551
    887510 8wi7:5 (3.5) BS01 rna ? GO:0003735 ... A0R3I9 38245551
    887511 8wi7:6 (3.5) BS01 rna ? GO:0003735 ... A0QS39 38245551
    887512 8wi7:7 (3.5) BS01 rna ? GO:0003735 ... A0R7K0 38245551
    887513 8wi7:8 (3.5) BS01 rna ? GO:0003735 ... A0QYU7 38245551
    887514 8wi7:E (3.5) BS01 rna ? GO:0002181 ... A0QSD4 38245551
    887515 8wi7:F (3.5) BS01 rna ? GO:0003735 ... A0QSD1 38245551
    887516 8wi7:G (3.5) BS01 rna ? GO:0003735 ... A0QSD2 38245551
    887517 8wi7:H (3.5) BS01 rna ? GO:0000049 ... A0QSG1 38245551
    887518 8wi7:H (3.5) BS02 rna ? GO:0000049 ... A0QSG1 38245551
    887519 8wi7:I (3.5) BS01 rna ? GO:0002181 ... A0QSG4 38245551
    887520 8wi7:M (3.5) BS01 rna ? GO:0003729 ... A0QSP8 38245551
    887521 8wi7:N (3.5) BS01 rna ? GO:0003735 ... A0QSF9 38245551
    887522 8wi7:N (3.5) BS02 rna ? GO:0003735 ... A0QSF9 38245551
    887523 8wi7:O (3.5) BS01 rna ? GO:0003735 ... A0QSG8 38245551
    887524 8wi7:Q (3.5) BS01 rna ? GO:0003735 ... A0QSL9 38245551
    887525 8wi7:R (3.5) BS01 rna ? GO:0003735 ... A0QSG5 38245551
    887526 8wi7:R (3.5) BS02 rna ? GO:0003735 ... A0QSG5 38245551
    887527 8wi7:S (3.5) BS01 rna ? GO:0003735 ... A0QV42 38245551
    887528 8wi7:S (3.5) BS02 rna ? GO:0003735 ... A0QV42 38245551
    887529 8wi7:T (3.5) BS01 rna ? GO:0000027 ... A0QYU6 38245551
    887530 8wi7:U (3.5) BS01 rna ? GO:0003723 ... A0R151 38245551
    887531 8wi7:V (3.5) BS01 rna ? GO:0003735 ... A0QSD6 38245551
    887532 8wi7:W (3.5) BS01 rna ? GO:0000027 ... A0QSD3 38245551
    887533 8wi7:X (3.5) BS01 rna ? GO:0003723 ... A0QSG0 38245551
    887534 8wi7:Z (3.5) BS01 rna ? GO:0003735 ... A0R150 38245551
    887535 8wi7:c (3.5) BS01 rna ? GO:0003735 ... A0QVB8 38245551
    887536 8wi7:d (3.5) BS01 rna ? GO:0003676 ... A0QSD7 38245551
    887537 8wi7:e (3.5) BS01 rna ? GO:0003723 ... A0QSL7 38245551
    887538 8wi7:f (3.5) BS01 rna ? GO:0003723 ... A0QSG6 38245551
    887539 8wi7:g (3.5) BS01 rna ? GO:0003735 ... N/A 38245551
    887540 8wi7:g (3.5) BS02 rna ? GO:0003735 ... N/A 38245551
    887541 8wi7:h (3.5) BS01 rna ? GO:0000028 ... A0QS97 38245551
    887542 8wi7:i (3.5) BS01 rna ? GO:0003735 ... A0QSG3 38245551
    887543 8wi7:j (3.5) BS01 rna ? GO:0003723 ... A0QSP9 38245551
    887544 8wi7:k (3.5) BS01 rna ? GO:0000049 ... A0QSD0 38245551
    887545 8wi7:l (3.5) BS01 rna ? GO:0003735 ... A0QSL6 38245551
    887546 8wi7:m (3.5) BS01 rna ? GO:0000049 ... A0QS96 38245551
    887547 8wi7:n (3.5) BS01 rna ? GO:0000049 ... A0QSL5 38245551
    887548 8wi7:o (3.5) BS01 rna ? GO:0003735 ... A0R550 38245551
    887549 8wi7:p (3.5) BS01 rna ? GO:0003735 ... A0QVQ3 38245551
    887550 8wi7:p (3.5) BS02 rna ? GO:0003735 ... A0QVQ3 38245551
    887551 8wi7:q (3.5) BS01 rna ? GO:0003735 ... A0QV37 38245551
    887552 8wi7:r (3.5) BS01 rna ? GO:0003735 ... A0QSE0 38245551
    887553 8wi7:s (3.5) BS01 rna ? GO:0003735 ... A0R7F7 38245551
    887554 8wi7:t (3.5) BS01 rna ? GO:0000028 ... A0QSD5 38245551
    887555 8wi7:u (3.5) BS01 rna ? GO:0003723 ... A0R102 38245551
    887556 8wi7:v (3.5) BS01 rna ? N/A A0QR10 38245551
    887557 8wi7:v (3.5) BS02 rna ? N/A A0QR10 38245551
    887558 8wi7:w (3.5) BS01 rna ? GO:0006417 ... A0QZ86 38245551
    887559 8wi8:1 (2.7) BS01 rna ? GO:0003735 ... A0QV03 38245551
    887560 8wi8:2 (2.7) BS01 rna ? GO:0003735 ... A0QSD9 38245551
    887561 8wi8:3 (2.7) BS01 rna ? GO:0003735 ... A0QSG7 38245551
    887562 8wi8:3 (2.7) BS02 rna ? GO:0003735 ... A0QSG7 38245551
    887563 8wi8:5 (2.7) BS01 rna ? GO:0003735 ... A0R3I9 38245551
    887564 8wi8:6 (2.7) BS01 rna ? GO:0003735 ... A0QS39 38245551
    887565 8wi8:7 (2.7) BS01 rna ? GO:0003735 ... A0R7K0 38245551
    887566 8wi8:8 (2.7) BS01 rna ? GO:0003735 ... A0QYU7 38245551
    887567 8wi8:E (2.7) BS01 rna ? GO:0002181 ... A0QSD4 38245551
    887568 8wi8:F (2.7) BS01 rna ? GO:0003735 ... A0QSD1 38245551
    887569 8wi8:G (2.7) BS01 rna ? GO:0003735 ... A0QSD2 38245551
    887570 8wi8:H (2.7) BS01 rna ? GO:0000049 ... A0QSG1 38245551
    887571 8wi8:H (2.7) BS02 rna ? GO:0000049 ... A0QSG1 38245551
    887572 8wi8:I (2.7) BS01 rna ? GO:0002181 ... A0QSG4 38245551
    887573 8wi8:J (2.7) BS01 rna ? GO:0003735 ... A0R7F6 38245551
    887574 8wi8:M (2.7) BS01 rna ? GO:0003729 ... A0QSP8 38245551
    887575 8wi8:N (2.7) BS01 rna ? GO:0003735 ... A0QSF9 38245551
    887576 8wi8:O (2.7) BS01 rna ? GO:0003735 ... A0QSG8 38245551
    887577 8wi8:Q (2.7) BS01 rna ? GO:0003735 ... A0QSL9 38245551
    887578 8wi8:R (2.7) BS01 rna ? GO:0003735 ... A0QSG5 38245551
    887579 8wi8:R (2.7) BS02 rna ? GO:0003735 ... A0QSG5 38245551
    887580 8wi8:S (2.7) BS01 rna ? GO:0003735 ... A0QV42 38245551
    887581 8wi8:T (2.7) BS01 rna ? GO:0000027 ... A0QYU6 38245551
    887582 8wi8:U (2.7) BS01 rna ? GO:0003723 ... A0R151 38245551
    887583 8wi8:V (2.7) BS01 rna ? GO:0003735 ... A0QSD6 38245551
    887584 8wi8:W (2.7) BS01 rna ? GO:0000027 ... A0QSD3 38245551
    887585 8wi8:X (2.7) BS01 rna ? GO:0003723 ... A0QSG0 38245551
    887586 8wi8:Z (2.7) BS01 rna ? GO:0003735 ... A0R150 38245551
    887587 8wi9:c (3.5) BS01 rna ? GO:0003735 ... A0QVB8 38245551
    887588 8wi9:d (3.5) BS01 rna ? GO:0003676 ... A0QSD7 38245551
    887589 8wi9:e (3.5) BS01 rna ? GO:0003723 ... A0QSL7 38245551
    887590 8wi9:f (3.5) BS01 rna ? GO:0003723 ... A0QSG6 38245551
    887591 8wi9:g (3.5) BS01 rna ? GO:0003735 ... N/A 38245551
    887592 8wi9:h (3.5) BS01 rna ? GO:0000028 ... A0QS97 38245551
    887593 8wi9:i (3.5) BS01 rna ? GO:0003735 ... A0QSG3 38245551
    887594 8wi9:j (3.5) BS01 rna ? GO:0003723 ... A0QSP9 38245551
    887595 8wi9:k (3.5) BS01 rna ? GO:0000049 ... A0QSD0 38245551
    887596 8wi9:l (3.5) BS01 rna ? GO:0003735 ... A0QSL6 38245551
    887597 8wi9:m (3.5) BS01 rna ? GO:0000049 ... A0QS96 38245551
    887598 8wi9:n (3.5) BS01 rna ? GO:0000049 ... A0QSL5 38245551
    887599 8wi9:o (3.5) BS01 rna ? GO:0003735 ... A0QSG2 38245551
    887600 8wi9:p (3.5) BS01 rna ? GO:0003735 ... A0QVQ3 38245551
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023)(download the PDF file).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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