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●TM-score ●TM-align ●US-align ●MM-align ●RNA-align ●NW-align ●LS-align ●EDTSurf ●MVP ●MVP-Fit ●SPICKER ●HAAD ●PSSpred ●3DRobot ●MR-REX ●I-TASSER-MR ●SVMSEQ ●NeBcon ●ResPRE ●TripletRes ●DeepPotential ●WDL-RF ●ATPbind ●DockRMSD ●DeepMSA ●FASPR ●EM-Refiner ●GPU-I-TASSER

●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
Download all results in tab-seperated text for 903398 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    887201 8wgh:B (2.4) BS13 CLA N/A GO:0000287 ... G9IB61 39060282
    887202 8wgh:B (2.4) BS14 CLA N/A GO:0000287 ... G9IB61 39060282
    887203 8wgh:B (2.4) BS15 CLA N/A GO:0000287 ... G9IB61 39060282
    887204 8wgh:B (2.4) BS16 CLA N/A GO:0000287 ... G9IB61 39060282
    887205 8wgh:B (2.4) BS17 CLA N/A GO:0000287 ... G9IB61 39060282
    887206 8wgh:B (2.4) BS18 CLA N/A GO:0000287 ... G9IB61 39060282
    887207 8wgh:B (2.4) BS19 CLA N/A GO:0000287 ... G9IB61 39060282
    887208 8wgh:B (2.4) BS20 CLA N/A GO:0000287 ... G9IB61 39060282
    887209 8wgh:B (2.4) BS21 CLA N/A GO:0000287 ... G9IB61 39060282
    887210 8wgh:B (2.4) BS22 CLA N/A GO:0000287 ... G9IB61 39060282
    887211 8wgh:B (2.4) BS23 CLA N/A GO:0000287 ... G9IB61 39060282
    887212 8wgh:B (2.4) BS24 CLA N/A GO:0000287 ... G9IB61 39060282
    887213 8wgh:B (2.4) BS25 CLA N/A GO:0000287 ... G9IB61 39060282
    887214 8wgh:B (2.4) BS26 CLA N/A GO:0000287 ... G9IB61 39060282
    887215 8wgh:B (2.4) BS27 CLA N/A GO:0000287 ... G9IB61 39060282
    887216 8wgh:B (2.4) BS28 CLA N/A GO:0000287 ... G9IB61 39060282
    887217 8wgh:B (2.4) BS29 CLA N/A GO:0000287 ... G9IB61 39060282
    887218 8wgh:B (2.4) BS30 CLA N/A GO:0000287 ... G9IB61 39060282
    887219 8wgh:B (2.4) BS31 CLA N/A GO:0000287 ... G9IB61 39060282
    887220 8wgh:B (2.4) BS32 CLA N/A GO:0000287 ... G9IB61 39060282
    887221 8wgh:B (2.4) BS33 CLA N/A GO:0000287 ... G9IB61 39060282
    887222 8wgh:B (2.4) BS34 CLA N/A GO:0000287 ... G9IB61 39060282
    887223 8wgh:B (2.4) BS35 CLA N/A GO:0000287 ... G9IB61 39060282
    887224 8wgh:B (2.4) BS36 CLA N/A GO:0000287 ... G9IB61 39060282
    887225 8wgh:B (2.4) BS37 CLA N/A GO:0000287 ... G9IB61 39060282
    887226 8wgh:B (2.4) BS38 CLA N/A GO:0000287 ... G9IB61 39060282
    887227 8wgh:B (2.4) BS39 CLA N/A GO:0000287 ... G9IB61 39060282
    887228 8wgh:B (2.4) BS40 CLA N/A GO:0000287 ... G9IB61 39060282
    887229 8wgh:B (2.4) BS41 CLA N/A GO:0000287 ... G9IB61 39060282
    887230 8wgh:B (2.4) BS42 CLA N/A GO:0000287 ... G9IB61 39060282
    887231 8wgh:B (2.4) BS43 CLA N/A GO:0000287 ... G9IB61 39060282
    887232 8wgh:B (2.4) BS44 CLA N/A GO:0000287 ... G9IB61 39060282
    887233 8wgh:B (2.4) BS45 CLA N/A GO:0000287 ... G9IB61 39060282
    887234 8wgh:B (2.4) BS46 CLA N/A GO:0000287 ... G9IB61 39060282
    887235 8wgh:B (2.4) BS47 PQN N/A GO:0000287 ... G9IB61 39060282
    887236 8wgh:B (2.4) BS48 CLA N/A GO:0000287 ... G9IB61 39060282
    887237 8wgh:C (2.4) BS01 SF4 N/A GO:0009055 ... A4QJG7 39060282
    887238 8wgh:C (2.4) BS02 SF4 N/A GO:0009055 ... A4QJG7 39060282
    887239 8wgh:F (2.4) BS01 CLA N/A GO:0003729 ... Q9SHE8 39060282
    887240 8wgh:F (2.4) BS02 CLA N/A GO:0003729 ... Q9SHE8 39060282
    887241 8wgh:F (2.4) BS03 CLA N/A GO:0003729 ... Q9SHE8 39060282
    887242 8wgh:F (2.4) BS04 CLA N/A GO:0003729 ... Q9SHE8 39060282
    887243 8wgh:F (2.4) BS05 CLA N/A GO:0003729 ... Q9SHE8 39060282
    887244 8wgh:F (2.4) BS06 CLA N/A GO:0003729 ... Q9SHE8 39060282
    887245 8wgh:F (2.4) BS07 CLA N/A GO:0003729 ... Q9SHE8 39060282
    887246 8wgh:F (2.4) BS08 CLA N/A GO:0003729 ... Q9SHE8 39060282
    887247 8wgh:G (2.4) BS01 CLA N/A N/A N/A 39060282
    887248 8wgh:G (2.4) BS02 CLA N/A N/A N/A 39060282
    887249 8wgh:G (2.4) BS03 CLA N/A N/A N/A 39060282
    887250 8wgh:G (2.4) BS04 CLA N/A N/A N/A 39060282
    887251 8wgh:G (2.4) BS05 CLA N/A N/A N/A 39060282
    887252 8wgh:H (2.4) BS01 peptide N/A N/A N/A 39060282
    887253 8wgh:H (2.4) BS02 CLA N/A N/A N/A 39060282
    887254 8wgh:H (2.4) BS03 CLA N/A N/A N/A 39060282
    887255 8wgh:H (2.4) BS04 CLA N/A N/A N/A 39060282
    887256 8wgh:J (2.4) BS01 CLA N/A GO:0009507 ... Q3C1K9 39060282
    887257 8wgh:J (2.4) BS02 CLA N/A GO:0009507 ... Q3C1K9 39060282
    887258 8wgh:J (2.4) BS03 CLA N/A GO:0009507 ... Q3C1K9 39060282
    887259 8wgh:J (2.4) BS04 CLA N/A GO:0009507 ... Q3C1K9 39060282
    887260 8wgh:J (2.4) BS05 CLA N/A GO:0009507 ... Q3C1K9 39060282
    887261 8wgh:K (2.4) BS01 CLA N/A N/A N/A 39060282
    887262 8wgh:K (2.4) BS02 CLA N/A N/A N/A 39060282
    887263 8wgh:K (2.4) BS03 CLA N/A N/A N/A 39060282
    887264 8wgh:K (2.4) BS04 CLA N/A N/A N/A 39060282
    887265 8wgh:K (2.4) BS05 CLA N/A N/A N/A 39060282
    887266 8wgh:L (2.4) BS01 peptide N/A N/A N/A 39060282
    887267 8wgh:L (2.4) BS02 CLA N/A N/A N/A 39060282
    887268 8wgh:L (2.4) BS03 CLA N/A N/A N/A 39060282
    887269 8wgh:L (2.4) BS04 CLA N/A N/A N/A 39060282
    887270 8wgh:L (2.4) BS05 CLA N/A N/A N/A 39060282
    887271 8wgh:L (2.4) BS06 CLA N/A N/A N/A 39060282
    887272 8wgh:L (2.4) BS07 CLA N/A N/A N/A 39060282
    887273 8wgh:L (2.4) BS08 CLA N/A N/A N/A 39060282
    887274 8wgh:L (2.4) BS09 CLA N/A N/A N/A 39060282
    887275 8wgh:N (2.4) BS01 CLA N/A N/A N/A 39060282
    887276 8wgh:O (2.4) BS01 CLA N/A N/A N/A 39060282
    887277 8wgh:O (2.4) BS02 CLA N/A N/A N/A 39060282
    887278 8wgh:O (2.4) BS03 CLA N/A N/A N/A 39060282
    887279 8wgh:O (2.4) BS04 CLA N/A N/A N/A 39060282
    887280 8wgh:O (2.4) BS05 CLA N/A N/A N/A 39060282
    887281 8wgm:A (2.15) BS01 NDP N/A N/A A7UD81 39250850
    887282 8wgm:A (2.15) BS02 UMP N/A N/A A7UD81 39250850
    887283 8wgm:A (2.15) BS03 WCQ N/A N/A A7UD81 39250850
    887284 8wgm:A (2.15) BS04 UMP N/A N/A A7UD81 39250850
    887285 8wgm:B (2.15) BS01 UMP N/A N/A A7UD81 39250850
    887286 8wgm:B (2.15) BS02 NDP N/A N/A A7UD81 39250850
    887287 8wgm:B (2.15) BS03 UMP N/A N/A A7UD81 39250850
    887288 8wgm:B (2.15) BS04 WCQ N/A N/A A7UD81 39250850
    887289 8wgn:A (2.0) BS01 NDP N/A N/A P00374 39250850
    887290 8wgn:A (2.0) BS02 WCQ N/A N/A P00374 39250850
    887291 8wgo:A (3.7) BS01 peptide N/A N/A A0A2U3S0J5 39154050
    887292 8wgo:A (3.7) BS02 GSP N/A N/A A0A2U3S0J5 39154050
    887293 8wgo:A (3.7) BS03 PO4 N/A N/A A0A2U3S0J5 39154050
    887294 8wgo:B (3.7) BS01 PO4 N/A N/A A0A2U3S0J5 39154050
    887295 8wgr:A (2.75) BS01 DSM N/A GO:0003779 ... P23975 39048818
    887296 8wgr:A (2.75) BS02 DSM N/A GO:0003779 ... P23975 39048818
    887297 8wgr:A (2.75) BS03 K N/A GO:0003779 ... P23975 39048818
    887298 8wgs:A (1.801) BS01 WGH ? N/A P02766 38670538
    887299 8wgs:B (1.801) BS01 WGH ? N/A P02766 38670538
    887300 8wgt:A (1.696) BS01 WGJ ? N/A P02766 38670538
    887301 8wgt:B (1.696) BS01 WGJ ? N/A P02766 38670538
    887302 8wgu:A (1.508) BS01 WH0 ? N/A P02766 38670538
    887303 8wgu:B (1.508) BS01 WH0 ? N/A P02766 38670538
    887304 8wgx:A (3.47) BS01 LNR N/A GO:0003779 ... P23975 39048818
    887305 8wgx:A (3.47) BS02 LNR N/A GO:0003779 ... P23975 39048818
    887306 8wh4:B (3.03) BS01 dna N/A N/A Q5IXS3 39167653
    887307 8wh4:C (3.03) BS01 dna N/A N/A Q5IXS3 39167653
    887308 8wh4:F (3.03) BS01 dna N/A N/A Q5IXS3 39167653
    887309 8wh5:A (3.58) BS01 dna ? GO:0000786 ... P59226 38413824
    887310 8wh5:A (3.58) BS02 dna ? GO:0000786 ... P59226 38413824
    887311 8wh5:B (3.58) BS01 dna ? GO:0000325 ... P59259 38413824
    887312 8wh5:B (3.58) BS02 dna ? GO:0000325 ... P59259 38413824
    887313 8wh5:C (3.58) BS01 dna ? GO:0000786 ... Q9LD28 38413824
    887314 8wh5:C (3.58) BS02 dna ? GO:0000786 ... Q9LD28 38413824
    887315 8wh5:D (3.58) BS01 dna ? GO:0000786 ... O23629 38413824
    887316 8wh5:E (3.58) BS01 dna ? GO:0000786 ... P59226 38413824
    887317 8wh5:F (3.58) BS01 dna ? GO:0000325 ... P59259 38413824
    887318 8wh5:F (3.58) BS02 dna ? GO:0000325 ... P59259 38413824
    887319 8wh5:G (3.58) BS01 dna ? GO:0000786 ... Q9LD28 38413824
    887320 8wh5:G (3.58) BS02 dna ? GO:0000786 ... Q9LD28 38413824
    887321 8wh5:H (3.58) BS01 dna ? GO:0000786 ... O23629 38413824
    887322 8wh5:K (3.58) BS01 dna 3.6.4.12 GO:0000786 ... Q9XFH4 38413824
    887323 8wh5:K (3.58) BS02 dna 3.6.4.12 GO:0000786 ... Q9XFH4 38413824
    887324 8wh6:A (3.27) BS01 ADP N/A N/A Q5IXS3 39167653
    887325 8wh6:B (3.27) BS01 ADP N/A N/A Q5IXS3 39167653
    887326 8wh6:C (3.27) BS01 dna N/A N/A Q5IXS3 39167653
    887327 8wh6:C (3.27) BS02 ADP N/A N/A Q5IXS3 39167653
    887328 8wh6:D (3.27) BS01 ADP N/A N/A Q5IXS3 39167653
    887329 8wh6:D (3.27) BS02 ZN N/A N/A Q5IXS3 39167653
    887330 8wh6:E (3.27) BS01 ZN N/A N/A Q5IXS3 39167653
    887331 8wh8:A (3.6) BS01 dna ? GO:0000786 ... P59226 38413824
    887332 8wh8:A (3.6) BS02 dna ? GO:0000786 ... P59226 38413824
    887333 8wh8:B (3.6) BS01 dna ? GO:0000325 ... P59259 38413824
    887334 8wh8:B (3.6) BS02 dna ? GO:0000325 ... P59259 38413824
    887335 8wh8:C (3.6) BS01 dna ? GO:0000786 ... Q9LD28 38413824
    887336 8wh8:C (3.6) BS02 dna ? GO:0000786 ... Q9LD28 38413824
    887337 8wh8:D (3.6) BS01 dna ? GO:0000786 ... O23629 38413824
    887338 8wh8:D (3.6) BS02 dna ? GO:0000786 ... O23629 38413824
    887339 8wh8:E (3.6) BS01 dna ? GO:0000786 ... P59226 38413824
    887340 8wh8:F (3.6) BS01 dna ? GO:0000325 ... P59259 38413824
    887341 8wh8:F (3.6) BS02 dna ? GO:0000325 ... P59259 38413824
    887342 8wh8:G (3.6) BS01 dna ? GO:0000786 ... Q9LD28 38413824
    887343 8wh8:G (3.6) BS02 dna ? GO:0000786 ... Q9LD28 38413824
    887344 8wh8:H (3.6) BS01 dna ? GO:0000786 ... O23629 38413824
    887345 8wh8:K (3.6) BS01 dna 3.6.4.12 GO:0000786 ... Q9XFH4 38413824
    887346 8wh8:K (3.6) BS02 dna 3.6.4.12 GO:0000786 ... Q9XFH4 38413824
    887347 8wh8:K (3.6) BS03 ADP 3.6.4.12 GO:0000786 ... Q9XFH4 38413824
    887348 8wh9:A (3.31) BS01 dna ? GO:0000786 ... P59226 38413824
    887349 8wh9:A (3.31) BS02 dna ? GO:0000786 ... P59226 38413824
    887350 8wh9:B (3.31) BS01 dna ? GO:0000325 ... P59259 38413824
    887351 8wh9:B (3.31) BS02 dna ? GO:0000325 ... P59259 38413824
    887352 8wh9:C (3.31) BS01 dna ? GO:0000786 ... Q9LD28 38413824
    887353 8wh9:C (3.31) BS02 dna ? GO:0000786 ... Q9LD28 38413824
    887354 8wh9:D (3.31) BS01 dna ? GO:0000786 ... O23629 38413824
    887355 8wh9:D (3.31) BS02 dna ? GO:0000786 ... O23629 38413824
    887356 8wh9:E (3.31) BS01 dna ? GO:0000786 ... P59226 38413824
    887357 8wh9:E (3.31) BS02 dna ? GO:0000786 ... P59226 38413824
    887358 8wh9:F (3.31) BS01 dna ? GO:0000325 ... P59259 38413824
    887359 8wh9:G (3.31) BS01 dna ? GO:0000786 ... Q9LD28 38413824
    887360 8wh9:G (3.31) BS02 dna ? GO:0000786 ... Q9LD28 38413824
    887361 8wh9:H (3.31) BS01 dna ? GO:0000786 ... O23629 38413824
    887362 8wh9:H (3.31) BS02 dna ? GO:0000786 ... O23629 38413824
    887363 8wh9:K (3.31) BS01 dna 3.6.4.12 GO:0000786 ... Q9XFH4 38413824
    887364 8wh9:K (3.31) BS02 dna 3.6.4.12 GO:0000786 ... Q9XFH4 38413824
    887365 8wh9:K (3.31) BS03 ADP 3.6.4.12 GO:0000786 ... Q9XFH4 38413824
    887366 8wha:A (4.05) BS01 dna ? GO:0000786 ... P59226 38413824
    887367 8wha:A (4.05) BS02 dna ? GO:0000786 ... P59226 38413824
    887368 8wha:B (4.05) BS01 dna ? GO:0000325 ... P59259 38413824
    887369 8wha:B (4.05) BS02 dna ? GO:0000325 ... P59259 38413824
    887370 8wha:C (4.05) BS01 dna ? GO:0000786 ... Q9LD28 38413824
    887371 8wha:C (4.05) BS02 dna ? GO:0000786 ... Q9LD28 38413824
    887372 8wha:D (4.05) BS01 dna ? GO:0000786 ... O23629 38413824
    887373 8wha:D (4.05) BS02 dna ? GO:0000786 ... O23629 38413824
    887374 8wha:E (4.05) BS01 dna ? GO:0000786 ... P59226 38413824
    887375 8wha:E (4.05) BS02 dna ? GO:0000786 ... P59226 38413824
    887376 8wha:F (4.05) BS01 dna ? GO:0000325 ... P59259 38413824
    887377 8wha:G (4.05) BS01 dna ? GO:0000786 ... Q9LD28 38413824
    887378 8wha:G (4.05) BS02 dna ? GO:0000786 ... Q9LD28 38413824
    887379 8wha:H (4.05) BS01 dna ? GO:0000786 ... O23629 38413824
    887380 8wha:H (4.05) BS02 dna ? GO:0000786 ... O23629 38413824
    887381 8wha:K (4.05) BS01 dna 3.6.4.12 GO:0000786 ... Q9XFH4 38413824
    887382 8wha:K (4.05) BS02 dna 3.6.4.12 GO:0000786 ... Q9XFH4 38413824
    887383 8wha:K (4.05) BS03 ADP 3.6.4.12 GO:0000786 ... Q9XFH4 38413824
    887384 8wha:L (4.05) BS01 dna 3.6.4.12 GO:0000786 ... Q9XFH4 38413824
    887385 8wha:L (4.05) BS02 dna 3.6.4.12 GO:0000786 ... Q9XFH4 38413824
    887386 8wha:L (4.05) BS03 BEF 3.6.4.12 GO:0000786 ... Q9XFH4 38413824
    887387 8wha:L (4.05) BS04 ADP 3.6.4.12 GO:0000786 ... Q9XFH4 38413824
    887388 8whb:A (3.17) BS01 dna ? GO:0000786 ... P59226 38413824
    887389 8whb:A (3.17) BS02 dna ? GO:0000786 ... P59226 38413824
    887390 8whb:B (3.17) BS01 dna ? GO:0000325 ... P59259 38413824
    887391 8whb:C (3.17) BS01 dna ? GO:0000786 ... Q9LD28 38413824
    887392 8whb:C (3.17) BS02 dna ? GO:0000786 ... Q9LD28 38413824
    887393 8whb:D (3.17) BS01 dna ? GO:0000786 ... O23629 38413824
    887394 8whb:D (3.17) BS02 dna ? GO:0000786 ... O23629 38413824
    887395 8whb:E (3.17) BS01 dna ? GO:0000786 ... P59226 38413824
    887396 8whb:E (3.17) BS02 dna ? GO:0000786 ... P59226 38413824
    887397 8whb:F (3.17) BS01 dna ? GO:0000325 ... P59259 38413824
    887398 8whb:F (3.17) BS02 dna ? GO:0000325 ... P59259 38413824
    887399 8whb:G (3.17) BS01 dna ? GO:0000786 ... Q9LD28 38413824
    887400 8whb:G (3.17) BS02 dna ? GO:0000786 ... Q9LD28 38413824
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023)(download the PDF file).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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