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●TM-score ●TM-align ●US-align ●MM-align ●RNA-align ●NW-align ●LS-align ●EDTSurf ●MVP ●MVP-Fit ●SPICKER ●HAAD ●PSSpred ●3DRobot ●MR-REX ●I-TASSER-MR ●SVMSEQ ●NeBcon ●ResPRE ●TripletRes ●DeepPotential ●WDL-RF ●ATPbind ●DockRMSD ●DeepMSA ●FASPR ●EM-Refiner ●GPU-I-TASSER

●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
Download all results in tab-seperated text for 903398 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    887001 8wfq:G (3.5) BS01 NAI 1.2.1.19
    1.2.1.28
    1.2.1.3
    1.2.1.36    		 GO:0000166 ... P00352 N/A
    887002 8wfq:H (3.5) BS01 NAI 1.2.1.19
    1.2.1.28
    1.2.1.3
    1.2.1.36    		 GO:0000166 ... P00352 N/A
    887003 8wfx:A (3.73) BS01 rna N/A N/A N/A 38218299
    887004 8wfx:G (3.73) BS01 rna N/A N/A N/A 38218299
    887005 8wfx:H (3.73) BS01 rna N/A N/A N/A 38218299
    887006 8wfx:I (3.73) BS01 rna N/A N/A N/A 38218299
    887007 8wfx:J (3.73) BS01 rna N/A N/A N/A 38218299
    887008 8wfx:K (3.73) BS01 rna N/A N/A N/A 38218299
    887009 8wfx:L (3.73) BS01 rna N/A N/A N/A 38218299
    887010 8wfx:M (3.73) BS01 rna N/A N/A N/A 38218299
    887011 8wfx:N (3.73) BS01 rna N/A N/A N/A 38218299
    887012 8wfy:A (2.6) BS01 5OD 3.1.3.48 GO:0004725 ... Q06124 N/A
    887013 8wfy:B (2.6) BS01 5OD 3.1.3.48 GO:0004725 ... Q06124 N/A
    887014 8wg0:A (1.95) BS01 CA 3.2.1.70 GO:0016787 ... A5FBI0 38661728
    887015 8wg0:A (1.95) BS02 GLC 3.2.1.70 GO:0016787 ... A5FBI0 38661728
    887016 8wg0:B (1.95) BS01 CA 3.2.1.70 GO:0016787 ... A5FBI0 38661728
    887017 8wg0:B (1.95) BS02 GLC 3.2.1.70 GO:0016787 ... A5FBI0 38661728
    887018 8wg0:C (1.95) BS01 CA 3.2.1.70 GO:0016787 ... A5FBI0 38661728
    887019 8wg0:C (1.95) BS02 GLC 3.2.1.70 GO:0016787 ... A5FBI0 38661728
    887020 8wg0:C (1.95) BS03 GLC 3.2.1.70 GO:0016787 ... A5FBI0 38661728
    887021 8wg0:D (1.95) BS01 CA 3.2.1.70 GO:0016787 ... A5FBI0 38661728
    887022 8wg0:D (1.95) BS02 GLC 3.2.1.70 GO:0016787 ... A5FBI0 38661728
    887023 8wg1:A (2.34) BS01 GLC 3.2.1.70 GO:0016787 ... A5FBI0 38661728
    887024 8wg1:A (2.34) BS02 GLC 3.2.1.70 GO:0016787 ... A5FBI0 38661728
    887025 8wg1:A (2.34) BS03 CA 3.2.1.70 GO:0016787 ... A5FBI0 38661728
    887026 8wg1:B (2.34) BS01 GLC 3.2.1.70 GO:0016787 ... A5FBI0 38661728
    887027 8wg1:B (2.34) BS02 GLC 3.2.1.70 GO:0016787 ... A5FBI0 38661728
    887028 8wg1:B (2.34) BS03 CA 3.2.1.70 GO:0016787 ... A5FBI0 38661728
    887029 8wg1:C (2.34) BS01 GLC 3.2.1.70 GO:0016787 ... A5FBI0 38661728
    887030 8wg1:C (2.34) BS02 GLC 3.2.1.70 GO:0016787 ... A5FBI0 38661728
    887031 8wg1:C (2.34) BS03 CA 3.2.1.70 GO:0016787 ... A5FBI0 38661728
    887032 8wg1:D (2.34) BS01 GLC 3.2.1.70 GO:0016787 ... A5FBI0 38661728
    887033 8wg1:D (2.34) BS02 GLC 3.2.1.70 GO:0016787 ... A5FBI0 38661728
    887034 8wg1:D (2.34) BS03 CA 3.2.1.70 GO:0016787 ... A5FBI0 38661728
    887035 8wg2:A (2.45) BS01 GLC 3.2.1.70 GO:0016787 ... A5FBI0 38661728
    887036 8wg2:A (2.45) BS02 GLC 3.2.1.70 GO:0016787 ... A5FBI0 38661728
    887037 8wg2:A (2.45) BS03 GLC 3.2.1.70 GO:0016787 ... A5FBI0 38661728
    887038 8wg2:A (2.45) BS04 CA 3.2.1.70 GO:0016787 ... A5FBI0 38661728
    887039 8wg2:B (2.45) BS01 GLC 3.2.1.70 GO:0016787 ... A5FBI0 38661728
    887040 8wg2:B (2.45) BS02 GLC 3.2.1.70 GO:0016787 ... A5FBI0 38661728
    887041 8wg2:B (2.45) BS03 CA 3.2.1.70 GO:0016787 ... A5FBI0 38661728
    887042 8wg2:C (2.45) BS01 GLC 3.2.1.70 GO:0016787 ... A5FBI0 38661728
    887043 8wg2:C (2.45) BS02 GLC 3.2.1.70 GO:0016787 ... A5FBI0 38661728
    887044 8wg2:C (2.45) BS03 CA 3.2.1.70 GO:0016787 ... A5FBI0 38661728
    887045 8wg2:D (2.45) BS01 GLC 3.2.1.70 GO:0016787 ... A5FBI0 38661728
    887046 8wg2:D (2.45) BS02 GLC 3.2.1.70 GO:0016787 ... A5FBI0 38661728
    887047 8wg2:D (2.45) BS03 GLC 3.2.1.70 GO:0016787 ... A5FBI0 38661728
    887048 8wg2:D (2.45) BS04 CA 3.2.1.70 GO:0016787 ... A5FBI0 38661728
    887049 8wg3:A (3.4) BS01 Y01 N/A N/A P42212
    Q3TWI9    		 N/A
    887050 8wg3:A (3.4) BS02 Y01 N/A N/A P42212
    Q3TWI9    		 N/A
    887051 8wg3:A (3.4) BS03 Y01 N/A N/A P42212
    Q3TWI9    		 N/A
    887052 8wg3:A (3.4) BS04 LBN N/A N/A P42212
    Q3TWI9    		 N/A
    887053 8wg4:A (3.5) BS01 LBN N/A N/A P42212
    Q3TWI9    		 N/A
    887054 8wg4:A (3.5) BS02 Y01 N/A N/A P42212
    Q3TWI9    		 N/A
    887055 8wg4:A (3.5) BS03 Y01 N/A N/A P42212
    Q3TWI9    		 N/A
    887056 8wg4:A (3.5) BS04 Y01 N/A N/A P42212
    Q3TWI9    		 N/A
    887057 8wg5:A (3.05) BS01 dna ? GO:0000786 ... P68431 38918638
    887058 8wg5:A (3.05) BS02 dna ? GO:0000786 ... P68431 38918638
    887059 8wg5:B (3.05) BS01 dna ? GO:0003677 ... P62805 38918638
    887060 8wg5:B (3.05) BS02 dna ? GO:0003677 ... P62805 38918638
    887061 8wg5:C (3.05) BS01 dna ? GO:0000786 ... P04908 38918638
    887062 8wg5:C (3.05) BS02 dna ? GO:0000786 ... P04908 38918638
    887063 8wg5:D (3.05) BS01 dna ? GO:0000786 ... O60814 38918638
    887064 8wg5:D (3.05) BS02 dna ? GO:0000786 ... O60814 38918638
    887065 8wg5:E (3.05) BS01 dna ? GO:0000786 ... P68431 38918638
    887066 8wg5:E (3.05) BS02 dna ? GO:0000786 ... P68431 38918638
    887067 8wg5:F (3.05) BS01 dna ? GO:0003677 ... P62805 38918638
    887068 8wg5:F (3.05) BS02 dna ? GO:0003677 ... P62805 38918638
    887069 8wg5:G (3.05) BS01 dna ? GO:0000786 ... P04908 38918638
    887070 8wg5:G (3.05) BS02 dna ? GO:0000786 ... P04908 38918638
    887071 8wg5:H (3.05) BS01 dna ? GO:0000786 ... O60814 38918638
    887072 8wg5:H (3.05) BS02 dna ? GO:0000786 ... O60814 38918638
    887073 8wg8:R (2.71) BS01 peptide ? GO:0004888 ... P47871 38346960
    887074 8wgf:A (1.85) BS01 ANP 2.7.11.24 GO:0004672 ... P53779 N/A
    887075 8wgh:1 (2.4) BS01 CHL N/A N/A N/A 39060282
    887076 8wgh:1 (2.4) BS02 CLA N/A N/A N/A 39060282
    887077 8wgh:1 (2.4) BS03 CLA N/A N/A N/A 39060282
    887078 8wgh:1 (2.4) BS04 CLA N/A N/A N/A 39060282
    887079 8wgh:1 (2.4) BS05 CLA N/A N/A N/A 39060282
    887080 8wgh:1 (2.4) BS06 CHL N/A N/A N/A 39060282
    887081 8wgh:1 (2.4) BS07 CLA N/A N/A N/A 39060282
    887082 8wgh:1 (2.4) BS08 CLA N/A N/A N/A 39060282
    887083 8wgh:1 (2.4) BS09 CLA N/A N/A N/A 39060282
    887084 8wgh:1 (2.4) BS10 CLA N/A N/A N/A 39060282
    887085 8wgh:1 (2.4) BS11 CLA N/A N/A N/A 39060282
    887086 8wgh:1 (2.4) BS12 CLA N/A N/A N/A 39060282
    887087 8wgh:1 (2.4) BS13 CLA N/A N/A N/A 39060282
    887088 8wgh:1 (2.4) BS14 CLA N/A N/A N/A 39060282
    887089 8wgh:2 (2.4) BS01 CHL N/A N/A N/A 39060282
    887090 8wgh:2 (2.4) BS02 CLA N/A N/A N/A 39060282
    887091 8wgh:2 (2.4) BS03 CLA N/A N/A N/A 39060282
    887092 8wgh:2 (2.4) BS04 CLA N/A N/A N/A 39060282
    887093 8wgh:2 (2.4) BS05 CHL N/A N/A N/A 39060282
    887094 8wgh:2 (2.4) BS06 CHL N/A N/A N/A 39060282
    887095 8wgh:2 (2.4) BS07 CHL N/A N/A N/A 39060282
    887096 8wgh:2 (2.4) BS08 CLA N/A N/A N/A 39060282
    887097 8wgh:2 (2.4) BS09 CLA N/A N/A N/A 39060282
    887098 8wgh:2 (2.4) BS10 CLA N/A N/A N/A 39060282
    887099 8wgh:2 (2.4) BS11 CLA N/A N/A N/A 39060282
    887100 8wgh:2 (2.4) BS12 CLA N/A N/A N/A 39060282
    887101 8wgh:2 (2.4) BS13 CLA N/A N/A N/A 39060282
    887102 8wgh:2 (2.4) BS14 CHL N/A N/A N/A 39060282
    887103 8wgh:2 (2.4) BS15 CLA N/A N/A N/A 39060282
    887104 8wgh:2 (2.4) BS16 CLA N/A N/A N/A 39060282
    887105 8wgh:3 (2.4) BS01 CHL N/A N/A N/A 39060282
    887106 8wgh:3 (2.4) BS02 CLA N/A N/A N/A 39060282
    887107 8wgh:3 (2.4) BS03 CLA N/A N/A N/A 39060282
    887108 8wgh:3 (2.4) BS04 CLA N/A N/A N/A 39060282
    887109 8wgh:3 (2.4) BS05 CLA N/A N/A N/A 39060282
    887110 8wgh:3 (2.4) BS06 CLA N/A N/A N/A 39060282
    887111 8wgh:3 (2.4) BS07 CHL N/A N/A N/A 39060282
    887112 8wgh:3 (2.4) BS08 CLA N/A N/A N/A 39060282
    887113 8wgh:3 (2.4) BS09 CLA N/A N/A N/A 39060282
    887114 8wgh:3 (2.4) BS10 CLA N/A N/A N/A 39060282
    887115 8wgh:3 (2.4) BS11 CLA N/A N/A N/A 39060282
    887116 8wgh:3 (2.4) BS12 CLA N/A N/A N/A 39060282
    887117 8wgh:3 (2.4) BS13 CLA N/A N/A N/A 39060282
    887118 8wgh:3 (2.4) BS14 CLA N/A N/A N/A 39060282
    887119 8wgh:3 (2.4) BS15 CLA N/A N/A N/A 39060282
    887120 8wgh:3 (2.4) BS16 CLA N/A N/A N/A 39060282
    887121 8wgh:3 (2.4) BS17 CLA N/A N/A N/A 39060282
    887122 8wgh:4 (2.4) BS01 CHL N/A N/A N/A 39060282
    887123 8wgh:4 (2.4) BS02 CLA N/A N/A N/A 39060282
    887124 8wgh:4 (2.4) BS03 CLA N/A N/A N/A 39060282
    887125 8wgh:4 (2.4) BS04 CLA N/A N/A N/A 39060282
    887126 8wgh:4 (2.4) BS05 CLA N/A N/A N/A 39060282
    887127 8wgh:4 (2.4) BS06 CLA N/A N/A N/A 39060282
    887128 8wgh:4 (2.4) BS07 CHL N/A N/A N/A 39060282
    887129 8wgh:4 (2.4) BS08 CHL N/A N/A N/A 39060282
    887130 8wgh:4 (2.4) BS09 CHL N/A N/A N/A 39060282
    887131 8wgh:4 (2.4) BS10 CLA N/A N/A N/A 39060282
    887132 8wgh:4 (2.4) BS11 CLA N/A N/A N/A 39060282
    887133 8wgh:4 (2.4) BS12 CLA N/A N/A N/A 39060282
    887134 8wgh:4 (2.4) BS13 CLA N/A N/A N/A 39060282
    887135 8wgh:4 (2.4) BS14 CLA N/A N/A N/A 39060282
    887136 8wgh:4 (2.4) BS15 CLA N/A N/A N/A 39060282
    887137 8wgh:4 (2.4) BS16 CLA N/A N/A N/A 39060282
    887138 8wgh:4 (2.4) BS17 CHL N/A N/A N/A 39060282
    887139 8wgh:A (2.4) BS01 CLA N/A GO:0000287 ... A0A8A0WPY6 39060282
    887140 8wgh:A (2.4) BS02 CLA N/A GO:0000287 ... A0A8A0WPY6 39060282
    887141 8wgh:A (2.4) BS03 CLA N/A GO:0000287 ... A0A8A0WPY6 39060282
    887142 8wgh:A (2.4) BS04 CLA N/A GO:0000287 ... A0A8A0WPY6 39060282
    887143 8wgh:A (2.4) BS05 CLA N/A GO:0000287 ... A0A8A0WPY6 39060282
    887144 8wgh:A (2.4) BS06 CLA N/A GO:0000287 ... A0A8A0WPY6 39060282
    887145 8wgh:A (2.4) BS07 CLA N/A GO:0000287 ... A0A8A0WPY6 39060282
    887146 8wgh:A (2.4) BS08 CLA N/A GO:0000287 ... A0A8A0WPY6 39060282
    887147 8wgh:A (2.4) BS09 CLA N/A GO:0000287 ... A0A8A0WPY6 39060282
    887148 8wgh:A (2.4) BS10 CLA N/A GO:0000287 ... A0A8A0WPY6 39060282
    887149 8wgh:A (2.4) BS11 CLA N/A GO:0000287 ... A0A8A0WPY6 39060282
    887150 8wgh:A (2.4) BS12 CLA N/A GO:0000287 ... A0A8A0WPY6 39060282
    887151 8wgh:A (2.4) BS13 CLA N/A GO:0000287 ... A0A8A0WPY6 39060282
    887152 8wgh:A (2.4) BS14 CLA N/A GO:0000287 ... A0A8A0WPY6 39060282
    887153 8wgh:A (2.4) BS15 CLA N/A GO:0000287 ... A0A8A0WPY6 39060282
    887154 8wgh:A (2.4) BS16 CLA N/A GO:0000287 ... A0A8A0WPY6 39060282
    887155 8wgh:A (2.4) BS17 CLA N/A GO:0000287 ... A0A8A0WPY6 39060282
    887156 8wgh:A (2.4) BS18 CLA N/A GO:0000287 ... A0A8A0WPY6 39060282
    887157 8wgh:A (2.4) BS19 CLA N/A GO:0000287 ... A0A8A0WPY6 39060282
    887158 8wgh:A (2.4) BS20 CLA N/A GO:0000287 ... A0A8A0WPY6 39060282
    887159 8wgh:A (2.4) BS21 CLA N/A GO:0000287 ... A0A8A0WPY6 39060282
    887160 8wgh:A (2.4) BS22 CLA N/A GO:0000287 ... A0A8A0WPY6 39060282
    887161 8wgh:A (2.4) BS23 CLA N/A GO:0000287 ... A0A8A0WPY6 39060282
    887162 8wgh:A (2.4) BS24 CLA N/A GO:0000287 ... A0A8A0WPY6 39060282
    887163 8wgh:A (2.4) BS25 CLA N/A GO:0000287 ... A0A8A0WPY6 39060282
    887164 8wgh:A (2.4) BS26 CLA N/A GO:0000287 ... A0A8A0WPY6 39060282
    887165 8wgh:A (2.4) BS27 CLA N/A GO:0000287 ... A0A8A0WPY6 39060282
    887166 8wgh:A (2.4) BS28 CLA N/A GO:0000287 ... A0A8A0WPY6 39060282
    887167 8wgh:A (2.4) BS29 CLA N/A GO:0000287 ... A0A8A0WPY6 39060282
    887168 8wgh:A (2.4) BS30 CLA N/A GO:0000287 ... A0A8A0WPY6 39060282
    887169 8wgh:A (2.4) BS31 CLA N/A GO:0000287 ... A0A8A0WPY6 39060282
    887170 8wgh:A (2.4) BS32 CLA N/A GO:0000287 ... A0A8A0WPY6 39060282
    887171 8wgh:A (2.4) BS33 CLA N/A GO:0000287 ... A0A8A0WPY6 39060282
    887172 8wgh:A (2.4) BS34 CLA N/A GO:0000287 ... A0A8A0WPY6 39060282
    887173 8wgh:A (2.4) BS35 CLA N/A GO:0000287 ... A0A8A0WPY6 39060282
    887174 8wgh:A (2.4) BS36 CLA N/A GO:0000287 ... A0A8A0WPY6 39060282
    887175 8wgh:A (2.4) BS37 CLA N/A GO:0000287 ... A0A8A0WPY6 39060282
    887176 8wgh:A (2.4) BS38 CLA N/A GO:0000287 ... A0A8A0WPY6 39060282
    887177 8wgh:A (2.4) BS39 CLA N/A GO:0000287 ... A0A8A0WPY6 39060282
    887178 8wgh:A (2.4) BS40 CLA N/A GO:0000287 ... A0A8A0WPY6 39060282
    887179 8wgh:A (2.4) BS41 CLA N/A GO:0000287 ... A0A8A0WPY6 39060282
    887180 8wgh:A (2.4) BS42 PQN N/A GO:0000287 ... A0A8A0WPY6 39060282
    887181 8wgh:A (2.4) BS43 SF4 N/A GO:0000287 ... A0A8A0WPY6 39060282
    887182 8wgh:A (2.4) BS44 CLA N/A GO:0000287 ... A0A8A0WPY6 39060282
    887183 8wgh:A (2.4) BS45 CLA N/A GO:0000287 ... A0A8A0WPY6 39060282
    887184 8wgh:A (2.4) BS46 CLA N/A GO:0000287 ... A0A8A0WPY6 39060282
    887185 8wgh:A (2.4) BS47 CLA N/A GO:0000287 ... A0A8A0WPY6 39060282
    887186 8wgh:A (2.4) BS48 CLA N/A GO:0000287 ... A0A8A0WPY6 39060282
    887187 8wgh:A (2.4) BS49 CLA N/A GO:0000287 ... A0A8A0WPY6 39060282
    887188 8wgh:A (2.4) BS50 CLA N/A GO:0000287 ... A0A8A0WPY6 39060282
    887189 8wgh:B (2.4) BS01 peptide N/A GO:0000287 ... G9IB61 39060282
    887190 8wgh:B (2.4) BS02 CLA N/A GO:0000287 ... G9IB61 39060282
    887191 8wgh:B (2.4) BS03 CLA N/A GO:0000287 ... G9IB61 39060282
    887192 8wgh:B (2.4) BS04 CLA N/A GO:0000287 ... G9IB61 39060282
    887193 8wgh:B (2.4) BS05 CLA N/A GO:0000287 ... G9IB61 39060282
    887194 8wgh:B (2.4) BS06 CLA N/A GO:0000287 ... G9IB61 39060282
    887195 8wgh:B (2.4) BS07 SF4 N/A GO:0000287 ... G9IB61 39060282
    887196 8wgh:B (2.4) BS08 CLA N/A GO:0000287 ... G9IB61 39060282
    887197 8wgh:B (2.4) BS09 CLA N/A GO:0000287 ... G9IB61 39060282
    887198 8wgh:B (2.4) BS10 CLA N/A GO:0000287 ... G9IB61 39060282
    887199 8wgh:B (2.4) BS11 CLA N/A GO:0000287 ... G9IB61 39060282
    887200 8wgh:B (2.4) BS12 CLA N/A GO:0000287 ... G9IB61 39060282
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023)(download the PDF file).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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